sdhaf4 (LOC106576700)


Basic Information

Item Value
gene id sdhaf4
gene name LOC106576700
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68157900 ~ 68162024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609351.2
TCATACGTCATTAAAGCTTGCCAAAACACCAGAACATTTGGTAAATGACTGTTTAACCATCTTTCTGAACGAGTGAGTGTATCAAACGGCAATCAACATGTCTCTACTAAGCGTCTGCGCTTCTGCATCGAAACGTCTTGTGACCCAAGGGTTATTCGTGGAATCTGCTTTTACAGGATACTTGCGGACAGCCAGTGGAGCAGTGAAGGACAAGGAGCCACTGCGCAAGGCCAAAACCCCCCAGGGCCGCTTCGACATGAATGATGAGAAGACCAAGGATCCCCTTGAAAAGTTCCCTGATGATGTGAACCCAGCCACAAAGGAGCAGGGGGGGCCCCGGGGCCCAGAGCCCACGCGCTACGGGGACTGGGAGAGGAAGGGCCGCTGTGTCGACTTCTAGTTTCCATACCTGGTATATTACACATGCGATGTGGACATACCTTAGCTATAAATTATGTATCTATATCTATGGACTGTCGTGCAAGAGACCAGGAATGGTCCACCATACAGAATCAGACTTAATTATTTCCCCCTGAACGACACAATTTGATGACTGTTCAACAGACTCCATGTGTATGAATTTGAAAAACAGTCTCTCTTTATATTGTGTTCCTTTGTTGAAATGTATGATGATGACGTTGTGAATGCTTGTCATGGTTATTGCTTCCTGTACAGAAATTAGAATTTTgtgaataaaataaaacatttctggAAAATACCGTGGCATGTTTTTGGTGTACGCTCATGATATTAAAGAGATATCTACAATG
>TU83574
AAAACACCAGAACATTTGGTAAATGACTGTTTAACCATCTTTCTGAACGAGTGAGTGTATCAAACGGCAATCAACATGTCTCTACTAAGCGTCTGCGCTTCTGCATCGAAACGTCTTGTGACCCAAGGGTTATTCGTGGAATCTGCTTTTACAGGATACTTGCGGACAGCCAGTGGAGCAGTGAAGGACAAGGAGCCACTGCGCAAGGCCAAAACCCCCCAGGGCCGCTTCGACATGAATGATGAGAAGACCAAGGATCCCCTTGAAAAGTTCCCTGATGATGTGAACCCAGCCACAAAGGAGCAGGGGGGGCCCCGGGGCCCAGAGCCCACGCGCTACGGGGACTGGGAGAGGAAGGGCCGCTGTGTCGACTTCTAGTTTCCATACCTGGTATATTACACATGCGATGTGGACATACCTTAGCTATAAATTATGTATCTATATCTATGGACTGTCGTGCAAGAGACCAGGAATGGTCCACCATACAGAATCAGACTTAATTATTTCCCCCTGAACGACACAATTTGATGACTGTTCAACAGACTCCATGTGTATGAATTTGAAAAACAGTCTCTCTTTATATTGTGTTCCTTTGTTGAAATGTATGATGATGACGTTGTGAATGCTTGTCATGGTTATTGCTTCCTGTACAGAAATTAGAATTTTgtgaataaaataaaacatttc

Function

NR:

description
PREDICTED: succinate dehydrogenase assembly factor 4, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609351.2 False 770 mRNA 0.44 3 68157900 68162024
TU83574 True 687 TUCP 0.45 3 68157961 68162002

Neighbor

gene id symbol gene type direction distance location
LOC110527795 LOC106576701 coding downstream 5884 68142952 ~ 68152016 (-)
LOC110527775 LOC106576703 coding downstream 40211 68104128 ~ 68117689 (-)
LOC110527765 LOC100194528 coding downstream 71784 68078150 ~ 68086116 (-)
LOC110527734 LOC106576704 coding downstream 80095 67961768 ~ 68077805 (-)
LOC110532597 NA coding downstream 204344 67897706 ~ 67953556 (-)
tlx1 LOC106576912 coding upstream 808 68162832 ~ 68168957 (-)
lbx1a LOC105005765 coding upstream 53975 68215999 ~ 68218542 (-)
cyp17a1 cyp17a1 coding upstream 239558 68401582 ~ 68404726 (-)
nt5c2a nt5c2 coding upstream 247489 68409513 ~ 68433891 (-)
pcgf6 pcgf6 coding upstream 276049 68438073 ~ 68444855 (-)
G75612 LOC106576702 non-coding downstream 15420 68138795 ~ 68142480 (-)
G75539 NA non-coding downstream 165872 67985167 ~ 67992028 (-)
G75426 NA non-coding downstream 406071 67751467 ~ 67751829 (-)
G75413 NA non-coding downstream 432100 67723624 ~ 67725800 (-)
G75664 NA non-coding upstream 43820 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 44792 68206816 ~ 68207132 (-)
G75764 NA non-coding upstream 70208 68232232 ~ 68285627 (-)
G75782 NA non-coding upstream 95581 68257605 ~ 68280269 (-)
G75846 NA non-coding upstream 208714 68370738 ~ 68370943 (-)
LOC110527687 sncg other downstream 476170 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 769856 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1147313 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 1335084 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3776544 64369803 ~ 64384521 (-)
G75682 NA other upstream 48156 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 413569 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 1920816 70082835 ~ 70088715 (-)
G78414 NA other upstream 2192892 70354916 ~ 70355591 (-)
G79616 NA other upstream 3159926 71321950 ~ 71386523 (-)

Expression


Co-expression Network