Gene
RNA
| Item | Value |
|---|---|
| gene id | fbxw4 |
| gene name | fbxw4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 68339037 ~ 68396401 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| fbxw4 | Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4). |
| description |
|---|
| F-box/WD repeat-containing protein 4 |
| id | description |
|---|---|
| K10262 | FBXW4, SHFM3; F-box and WD-40 domain protein 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983601.1 | False | 3265 | mRNA | 0.48 | 9 | 68339037 | 68367997 |
| XM_036983599.1 | True | 2379 | mRNA | 0.50 | 11 | 68339037 | 68396401 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fgf8a | LOC106576696 | coding | upstream | 16100 | 68316332 ~ 68322937 (+) |
| slc2a15a | LOC106576697 | coding | upstream | 43631 | 68275379 ~ 68295406 (+) |
| LOC110527784 | LOC106576702 | coding | upstream | 198198 | 68127865 ~ 68140839 (+) |
| LOC118965297 | NA | coding | upstream | 221653 | 68116128 ~ 68117384 (+) |
| mmrn2a | mmrn2 | coding | upstream | 614677 | 67705791 ~ 67724360 (+) |
| borcs7 | borcs7 | coding | downstream | 9096 | 68405497 ~ 68408288 (+) |
| inaa | ina | coding | downstream | 38165 | 68434566 ~ 68437539 (+) |
| LOC118966747 | NA | coding | downstream | 58436 | 68454837 ~ 68454893 (+) |
| LOC118965305 | NA | coding | downstream | 90513 | 68486914 ~ 68495090 (+) |
| LOC110527930 | LOC106576683 | coding | downstream | 123393 | 68519794 ~ 68548397 (+) |
| G75702 | NA | non-coding | upstream | 53411 | 68232213 ~ 68285626 (+) |
| G75167 | NA | non-coding | upstream | 236381 | 68099714 ~ 68102656 (+) |
| G75165 | NA | non-coding | upstream | 242363 | 68095675 ~ 68096674 (+) |
| G75117 | NA | non-coding | upstream | 259549 | 68078074 ~ 68079488 (+) |
| G75151 | NA | non-coding | upstream | 262970 | 68072671 ~ 68076067 (+) |
| G75888 | NA | non-coding | downstream | 48997 | 68445398 ~ 68445652 (+) |
| G75893 | NA | non-coding | downstream | 62922 | 68459323 ~ 68460387 (+) |
| G75948 | NA | non-coding | downstream | 100200 | 68496601 ~ 68497921 (+) |
| G76016 | NA | non-coding | downstream | 158212 | 68554613 ~ 68554908 (+) |
| G76025 | NA | non-coding | downstream | 174447 | 68570848 ~ 68571060 (+) |
| G74139 | NA | other | upstream | 1554068 | 66784335 ~ 66784969 (+) |
| G74067 | LOC106576735 | other | upstream | 1580053 | 66756207 ~ 66758984 (+) |
| LOC118965274 | LOC106576739 | other | upstream | 1914956 | 66417495 ~ 66424081 (+) |
| G73515 | NA | other | upstream | 2050568 | 66287679 ~ 66288469 (+) |
| LOC110527164 | LOC106576754 | other | upstream | 2416752 | 65915581 ~ 65922285 (+) |
| G78121 | NA | other | downstream | 2175264 | 70571665 ~ 70654961 (+) |
| ccdc85a | ccdc85a | other | downstream | 2640069 | 71036440 ~ 71076239 (+) |
| G82111 | LOC106577091 | other | downstream | 5155215 | 73551616 ~ 73571737 (+) |
| G83836 | NA | other | downstream | 6512824 | 74909225 ~ 74909806 (+) |
| G83829 | NA | other | downstream | 6716259 | 75112660 ~ 75114190 (+) |
