borcs7 (borcs7)


Basic Information

Item Value
gene id borcs7
gene name borcs7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68405497 ~ 68408288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599833.2
GACACTGTGTGGTATATCTTGTTTGTTTATAAAACATCTTTGCTGCAATGGCTTCCGTGGAGTCGCAACCACGGTTTGGTCAATCTGTCAAAGGATTGTTGTCTGATAAAGTGGGCTCCTGCAGCGGGGATGTGATCGCCCTGACTCGCCAGGTGCTAAAGGGATCACGGAGTCAAGAGCTTCTGGGACAGGCTGCGAGAAACATGGTCATTCAGGAGGACGCCATTCTGCACTCAGAGGATAGTTTGAGAAAAATGTCCATCATCACCACCCATTTGCAATATCAACAAGAGGCCATCCAGAAGAATGTGGAACACTCCAAAAACCTTCAGGATCAACTGAGGCATTTACTGAAATGAAGTGTCTGCACTGAGACACTTAAATGAAAGACTATGAGCTGCTCCTGTCTGTGTTACCATGTTGCTTCTTCTGAGAAAATATgtgcagacccccccccccccccccccccccccttacaatGATCTCAAACTGTGTTTTTAATACACAATGAAATTAAACACAGACTACCCCTTGCTAATCAGAACTCTCAGGTATGTTGTGGTGGGCTGTCATTACAATTGCTTCACAGGAACCTAACCAGCTGAGCTAACAATGAAACAAATGTATAATTTTGTATAAAATAATCCAACAGGCTCCACATTACAATAATCACAGTACCCCCTGGTGCACTGTTAATTTATTTAGCCATTTAATCCGTTTTTGAAGAAAAATCACATTTTTCCACTGCTTTCATGTGTTTGAAACGAGAGCTTGAATAAAGTGTCCCACTCCACAGCAGTTGCTTTCCATTGGAGCACTGCGATTGGTTGGCCAAAACTCTGGGGCGGTGCTTGGCGAAGGGTACATTCTATCAGAATGTTCTCTAACATTGCACCTTCCTGATGTAGCCCCTGGCCTTTTGGACTGGAGGCTGCCTGGAAGTCTCCCCAGGTACATGCTGTTCTTAAGAATATGCATACCAGCATATGGTGCTGTTATCCTGCATATTAGTGACTCTTATTTATTAAAGCTCTACTCCAGTCTCCATTTTAGCTCATTTATCAcatgatttacttaacaaaaggcacatctcaattgGTGGCCTTTCCTCTTTTGGTCTTTATTCTTGCAAGCAAGGGGGAGGCCAATGACATCAGAAGGCACCATCATAACCAATGACCTACTCCATTGGAGATTCTTGTTTGGGCAAAGTACCATCCTCCCCTCTGTGACCCGGAAACCAATAAGTGGTTGAGGAGTGTGTCATTTCATTAGTAGGCAAACAGAATAGTGTCCTCCCCCGCCTACCTTTCATTGAGGATACTCGTGTATCCTACAACAGAAGAGTTTAGAAAATCTGCCACACCTTTGAATCAGCTTTTGTTTTGTCAGAGGAGAAAgatgcacacaaaaaaatatatatgttactCATTgtttcacatccggccgtgattgggagtcccatagcgtggttcacaattggcccagtgtcgtccaggtttggctgggttaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaaatttaaaGCAAGCGGTTTTCCATCCACATTAATTTTCCACGCCAACTCTCCtcgattacctttgacctttAGCAAAAGGAGGTGAGAGGACGCAGGAGGTGAGGACATCTAATTGGGAAAAGGCCCATGAAGTTTGCACTTGtctaaaaaactttttttttacccctgtgtgtgtacattataatatttatatgtgggatattgtttttcaacaggaaaagttcTAAAAGTGTATACATCAGAATATTTTCCTTCACAGTAGGGCGGGGGGTCGGAATAATGTCATTTCAATATGAATAGTTTAATTTACACTGGATCTATAACATACTTAATATTGATTGACGTTAGCCTATTTACTGTGAAAATATTAAAGTCGATATTTTACCTA

Function

symbol description
borcs7 Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Orthologous to human BORCS7 (BLOC-1 related complex subunit 7).

NR:

description
BLOC-1-related complex subunit 7

GO: NA

KEGG:

id description
K20821 BORCS7; BLOC-1 related complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599833.2 True 1965 mRNA 0.42 5 68405497 68408288

Neighbor

gene id symbol gene type direction distance location
fbxw4 fbxw4 coding upstream 9096 68339037 ~ 68396401 (+)
fgf8a LOC106576696 coding upstream 82560 68316332 ~ 68322937 (+)
slc2a15a LOC106576697 coding upstream 110091 68275379 ~ 68295406 (+)
LOC110527784 LOC106576702 coding upstream 264658 68127865 ~ 68140839 (+)
LOC118965297 NA coding upstream 288113 68116128 ~ 68117384 (+)
inaa ina coding downstream 26278 68434566 ~ 68437539 (+)
LOC118966747 NA coding downstream 46549 68454837 ~ 68454893 (+)
LOC118965305 NA coding downstream 78626 68486914 ~ 68495090 (+)
LOC110527930 LOC106576683 coding downstream 111506 68519794 ~ 68548397 (+)
LOC110528033 NA coding downstream 237484 68645772 ~ 68647556 (+)
G75745 NA non-coding upstream 27163 68377717 ~ 68378334 (+)
G75702 NA non-coding upstream 119871 68232213 ~ 68285626 (+)
G75167 NA non-coding upstream 302841 68099714 ~ 68102656 (+)
G75165 NA non-coding upstream 308823 68095675 ~ 68096674 (+)
G75117 NA non-coding upstream 326009 68078074 ~ 68079488 (+)
G75888 NA non-coding downstream 37110 68445398 ~ 68445652 (+)
G75893 NA non-coding downstream 51035 68459323 ~ 68460387 (+)
G75948 NA non-coding downstream 88313 68496601 ~ 68497921 (+)
G76016 NA non-coding downstream 146325 68554613 ~ 68554908 (+)
G76025 NA non-coding downstream 162560 68570848 ~ 68571060 (+)
G75747 NA other upstream 30568 68374505 ~ 68374929 (+)
G74139 NA other upstream 1620528 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 1646513 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 1981416 66417495 ~ 66424081 (+)
G73515 NA other upstream 2117028 66287679 ~ 66288469 (+)
G78121 NA other downstream 2163377 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 2628182 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 5143328 73551616 ~ 73571737 (+)
G83836 NA other downstream 6500937 74909225 ~ 74909806 (+)
G83829 NA other downstream 6704372 75112660 ~ 75114190 (+)

Expression


Co-expression Network