inaa (ina)


Basic Information

Item Value
gene id inaa
gene name ina
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68434566 ~ 68437539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609473.2
TGTGTATTGGGTCGGTCTGCCTAAACCTATATAAGCACTGCAGCCAAAGTTTTCCAAAGCCTCTCTTGCCAACCGCAAAGATGAACTACGGATCTGACCACTATACCTCGTCATCCTACCGAAAGATCTACAGGGACGCTCCTCGTTTCTCACCCTCAACCTCTCGTATGAGTAGTCCTTCCGCCTCCTCCCGCAGTTCTGTGTCCTCCACCAGTTACAGGTCTGCGGTGTCTCTCCCCCGCAGCAGTGCGTCATCGCTGGGCTACTACAGAAGGACCGGTCAGTCTTCTTCCTTTTCGACGGTGCCAGGTGACAGCCTCGAATTGACTCAATCCTCCGTCCTCAGCAATGAGTTGAAAGTCACCCGAACCAATGAGAAGGAACAACTGCATGGTCTCAATGACCGCTTCGCCATGTTCATCGAGAAAGTGCGTACCCTGGAGCAGCAAAACAAAGTCTTGGAGACGGAGCTGGTGACCCTGCACCAGAGGCAGCACGAGCCATCCCGCATCGCGGACCTATACCAGCAGGAGATGCGCGAGCTTCGCGCGCAAGTGGAGGAGATCGGCAGCGAGAAAGCCCACATTCTCATCGATAGGGACAACTTAGAAGAAGACATGCACAAGCTTAGGGCCAAATATGAGGAGGAGATAAGGGCGCGCGAGGAGGCTGAGCAGACCCTGCGGTCGTTCAAAAAGGACGTGGATGACGCCACCATGGCGCGGCTGGATCTAGAGCGCAAAGTGGAGGGCCTCCTGGATGAGATATCCTTCCTGAGGAAGGTACACGACGAGGAGGTGGCCGAACTGAGCGGTATGGTCCAGGCAGCTCATGTGTCAGTCGAGGTAGAGCTGGCCAAACCCGACCTCACTTCGGCTCTGAAAGAGATCCGCAATCAGTACGAGACTCTGGCTTCTAAGAACCTGCACTCCGCGGAAGAGTGGTATAAATCCAAGTTTGCCAATCTCAACGAGCAGGCCACCAGGAGCAATGAGGCAATGCGGGCCAGCAGGGAGGAGATCAACGAATTCAGGAGACAACTGCAGTCCAAGACAATTGAGTTGGAGACCCTACATGGCATCAACGAGTCTTTGGAACGGCAGATTCGAGAGACAGAAGATGGACACAATCTTGAAATCGCAGGTTTGCAGGATACCATTGGGCACCTGGACAATGATTTGCGGAACATCAAGAATGACATGGCTCAGCATCTTCGAGAGTACCAGGATCTGCTCAATGTCAAAATGGCTCTGGACATTGAAATAGCTGCCTACAGAAAACTGCTGGAGGGAGAGGAAACTCACTTTAGCGCCTCAAACCATGGCACCAGTCACTTTGGATACCAGCCACGTGCCTCAAGCTATGCACGGAGTACCAATAAGGACAAAGAGGCTGCTCAGAAAGATGGCTTCAAGGAGATCACTGAGGAAAAAGTGGAGAAGAGCGATGAAGCAGATATCAACTCAAACAACTAGACAACGTAAATTCAGAGCTTGCAAGCCAGTTATCTAAAGGCACAGAgaaaatgtactgtatatcttaCATTATTACTGGGATGCATTATGTGCAGCTGAGCACTGCTACACTCTCCAGTTTCAATTAAAATAGTGGAAATCGAGATCGTCTTTGTTAGTAATATGAAAGGAATAtggaaggtaggtaggtagttgaaAGGAGTGATAATTTTGTAATTTAAACAAATATAATATTTTAatgaaatgtatatatttttgtagCCTGGTTGCCTGATCTGTATGTGTTTTAGCCAACTCTTCTGTCGTTCGTTGTTATGCCATGCAAATACAGTACATGGCTAATATTTTTGGGAGTTGGTGCTGTTGATGAAGCCATTAAAAATGTACTGTAACCA

Function

symbol description
ina Predicted to be a structural constituent of cytoskeleton. Involved in substantia nigra development. Located in cytoplasmic ribonucleoprotein granule.

NR:

description
alpha-internexin

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609473.2 True 1870 mRNA 0.49 3 68434566 68437539

Neighbor

gene id symbol gene type direction distance location
borcs7 borcs7 coding upstream 26278 68405497 ~ 68408288 (+)
fbxw4 fbxw4 coding upstream 38165 68339037 ~ 68396401 (+)
fgf8a LOC106576696 coding upstream 111629 68316332 ~ 68322937 (+)
slc2a15a LOC106576697 coding upstream 139160 68275379 ~ 68295406 (+)
LOC110527784 LOC106576702 coding upstream 293727 68127865 ~ 68140839 (+)
LOC118966747 NA coding downstream 17298 68454837 ~ 68454893 (+)
LOC118965305 NA coding downstream 49375 68486914 ~ 68495090 (+)
LOC110527930 LOC106576683 coding downstream 82255 68519794 ~ 68548397 (+)
LOC110528033 NA coding downstream 208233 68645772 ~ 68647556 (+)
LOC110528049 LOC106576681 coding downstream 325254 68762793 ~ 68769165 (+)
G75745 NA non-coding upstream 56232 68377717 ~ 68378334 (+)
G75702 NA non-coding upstream 148940 68232213 ~ 68285626 (+)
G75167 NA non-coding upstream 331910 68099714 ~ 68102656 (+)
G75165 NA non-coding upstream 337892 68095675 ~ 68096674 (+)
G75117 NA non-coding upstream 355078 68078074 ~ 68079488 (+)
G75888 NA non-coding downstream 7859 68445398 ~ 68445652 (+)
G75893 NA non-coding downstream 21784 68459323 ~ 68460387 (+)
G75948 NA non-coding downstream 59062 68496601 ~ 68497921 (+)
G76016 NA non-coding downstream 117074 68554613 ~ 68554908 (+)
G76025 NA non-coding downstream 133309 68570848 ~ 68571060 (+)
G75747 NA other upstream 59637 68374505 ~ 68374929 (+)
G74139 NA other upstream 1649597 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 1675582 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 2010485 66417495 ~ 66424081 (+)
G73515 NA other upstream 2146097 66287679 ~ 66288469 (+)
G78121 NA other downstream 2134126 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 2598931 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 5114077 73551616 ~ 73571737 (+)
G83836 NA other downstream 6471686 74909225 ~ 74909806 (+)
G83829 NA other downstream 6675121 75112660 ~ 75114190 (+)

Expression


Co-expression Network