LOC110527905 (LOC106576688)


Basic Information

Item Value
gene id LOC110527905
gene name LOC106576688
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68448729 ~ 68460372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609511.2
ccaagagagaaaaagagagactgggaccagaggagaggtgctgCCTGGGTTAAACTTAGCAGTGTTAGgctcattttttctctctctttttttcaccTCCTCTTTGTCTGGTTTGAAGGGGGGGGAGCAGATGGCTGGGGCTGACAGAGCAGAGAGCACAACGCCAGTGCGGGCATGAGGAGCTGCTTTCACAGGAACACTGGGCACTGCAGGGAGCCATTCGCGTCTTTCCTTTGTCTCCCATAATTGGCAGAGGCAGGTTTTAACAGCAAGAGAGGAAATCTATGTCGAGAcgaaggaggaggcagagagaaagagagagaaggagagtaaaACAGAGGACCTCAGAGGAGCAGGGGAAGTAGGGGTAAGCCTTGTGACAATGTTTCTCTCCTTTTGGACTATTAACAATGACATTGATGTGTCTTTAACCTGCCAGGTTTGGATGTTTATATCCTAGTATAAACAATGCTATGATCCGGATATCTTTTGGTTTATTTGAAGAGTGGAGCCATTGCAACACGGCCGTATTTGATTCCACAATACCTTTTCACATTTGTTTTGAGCTTGATTTTGGATTGAAAAAAGTACCTATCAATTCCTGATGACATTGTTGCTTGATTATTCACATCATGCTTACCTAAATCATCACAAAGGAGAGTTGATTTCAACAATGAGTGACTTGTTTTTGTAATGTTTTACTGGAAAACAGACCATCATCCACAAGAGAGTTTCTTGAGGAACTGAGAGTTTTATCCCAAAGGGATTGACTCAGCCTACAAACACAACAAGGATTGAGTAATCAGTCCTTTTCATTGGGGACAGGAGAGTTCGGACTCACGTCATTGTCTGGAAGACAGTGACTTATCTGGGGACAATCTCCTCAATCTGTCTGCACCCCAACAAACAAAGACCTAGGACTGGTTGTGACCTCAGACACAGTGACCCTAGTGGCCGTGATTGACTTCAGACGTTTTCACCCCAATCCACTGATTCCCTGGGTCTCTGGCCATCTGGAAGCTGATTTCATGCACCCGGTCCGGTGGTGTAACGGATGTCTGTGCGGTTTAAGATCGCAGATCTCAGACCCTTACGGCAAGATGACATCGGAAGACATCTACAACCTGCCCCTCAACGTGTACGTCATCATCCTGGGCATCGGCCTCTTCATCTTCATGCTCAGCCTGATCTTCTGCTGCTACATGTTCAGGTTAAGGCGACAAGGCACAAGGGAGCAATACGGATATAATGAGGTTGTTTTGAAAGGAGCAGGAAAGAAACTGAGTCTTCTTGGACAGACCTGTGCAGTGTGCCTAGAACAGTTCAAAAGCAGAGACGAACTTGGAGTGTGTCCCTGCTCACATGCCTTCCACAAGAAGTGTCTGTTAAAATGGCTGGAGATCCGCAGTGTCTGCCCTATGTGCAACAAACCTATCTGCCGTTTGCAGCCAGACCCCCCACAGGGCGCAGAGAGGCCCCAGAGCCCAATGGaggtgtgagaggagagaaggaccCCACCACAGCACCTCAACACCACTAACTACAGTCCCAACCTGCCTCTCCCAGACCGCCTGACCCCTAAAAATCACACCCTGGTCCAGGTGAAGGGAATCAGGCATTCCATCCTGACCTCTCCCATATATCCCTATCCTAGTTCTGACAGACTATTTAAATCCACTCCACTCTTTGAAGGTGTTAGAGCCCTGCAGGTGTGTGTGAGATAAGACTTTAAAGTGGAACTCATAGAACAATATTGGGGGACAAACTGACAAACTGTCAGTACCCTCCATCCCATGTTGCCAATTGAAGATAGGGTGTCTGATTGGTCGATGAGTAACATAGGACCTGGATGGAGGTGACACCCACATACCACGCTCATAGCTGCCAATATGGGCCTGTGAGGTATCCAGCTATGACATAGGGTACAGTGACCCTGTCTCTAAATAACACATCAGGGTCATTCTTGATTTGCAGTGCCTTTTGGGCATGGCATTTTGGAAGACATTTACTTCATTTTTGTTTAGttgtttttatttaaatgtatttgggtatATCTTCCCATTCTAAATAAATTAATATGGCCGATTAATGACTTTAAGTAATTTTGACGATAACCTTCTGCCACCGCTAGGAGTAGTAACACCAATGATGCCATTATCGTATGTCAGAAAGTGCAACCATTCTGCCTGCACTGTCGGGTTGAGGGACGGGCATCGCGTGGGAGTGACCCACCTGTCAGAAGACAATGTAATGTTGGTAATACCAATGACACATTTTTTGTAATTGAGGATTTTCTTAAATGGAGACCACAGCTGCTCAGATCTAATGTCATTAACCCTTAATTTACTCAAGTTATATGATTAATCGCTCACAATGTAATTTCTCTTCATTTAAATTGATTAGCCTAACACTAATAACACTTTATTTATCCACACCATATTATAACACTCTAAAAGGGTATGAATAGCTAGCAACTTTCTTTAATATAGACTACTCCTGCGATAAGAGTTTTTCTTGGAGAGAATGCTCAAGGTCCTTGTATATCTTTTGTGTAATGAGTCATCTCagaaacccagaactaaaatcttaCGTAATTGCGTCAGATGCTCGATTAGATTCTGGAGGAGATGTATTAGGAAGGATACTAACACGACTAGTGAAGTCTCTTTAAACAATTCATTAAAGATACAGTTTTGCAGTAGAAATGACTTGCTTTATGTTTTATCATTCATAAACAGTTCAATATCAACAAAAAATGTGTATGATGTGTAACTATTTGTCATAAAGTGTTTTTCATGGTTGAAAAGCTGAGGGACGCAAATGCCATCGCAATTCAATTAAATATATAGTCTTTAAGTTATTTCTAAGGAATTGTTTTGTATTATAACTGACTTTCAATAAAGTGTAGTGTTTCAGTGA
>XM_036983661.1
GAgccaagagagaaaaagagagactgggaccagaggagaggtgctgCCTGGGTTAAACTTAGCAGTGTTAGgctcattttttctctctctttttttcaccTCCTCTTTGTCTGGTTTGAAGGGGGGGGAGCAGATGGCTGGGGCTGACAGAGCAGAGAGCACAACGCCAGTGCGGGCATGAGGAGCTGCTTTCACAGGAACACTGGGCACTGCAGGGAGCCATTCGCGTCTTTCCTTTGTCTCCCATAATTGGCAGAGGCAGGTTTTAACAGCAAGAGAGGAAATCTATGTCGAGAcgaaggaggaggcagagagaaagagagagaaggagagtaaaACAGAGGACCTCAGAGGAGCAGGGGAAGTAGGGGATGTCTGTGCGGTTTAAGATCGCAGATCTCAGACCCTTACGGCAAGATGACATCGGAAGACATCTACAACCTGCCCCTCAACGTGTACGTCATCATCCTGGGCATCGGCCTCTTCATCTTCATGCTCAGCCTGATCTTCTGCTGCTACATGTTCAGGTTAAGGCGACAAGGCACAAGGGAGCAATACGGATATAATGAGGTTGTTTTGAAAGGAGCAGGAAAGAAACTGAGTCTTCTTGGACAGACCTGTGCAGTGTGCCTAGAACAGTTCAAAAGCAGAGACGAACTTGGAGTGTGTCCCTGCTCACATGCCTTCCACAAGAAGTGTCTGTTAAAATGGCTGGAGATCCGCAGTGTCTGCCCTATGTGCAACAAACCTATCTGCCGTTTGCAGCCAGACCCCCCACAGGGCGCAGAGAGGCCCCAGAGCCCAATGGaggtgtgagaggagagaaggaccCCACCACAGCACCTCAACACCACTAACTACAGTCCCAACCTGCCTCTCCCAGACCGCCTGACCCCTAAAAATCACACCCTGGTCCAGGTGAAGGGAATCAGGCATTCCATCCTGACCTCTCCCATATATCCCTATCCTAGTTCTGACAGACTATTTAAATCCACTCCACTCTTTGAAGGTGTTAGAGCCCTGCAGGTGTGTGTGAGATAAGACTTTAAAGTGGAACTCATAGAACAATATTGGGGGACAAACTGACAAACTGTCAGTACCCTCCATCCCATGTTGCCAATTGAAGATAGGGTGTCTGATTGGTCGATGAGTAACATAGGACCTGGATGGAGGTGACACCCACATACCACGCTCATAGCTGCCAATATGGGCCTGTGAGGTATCCAGCTATGACATAGGGTACAGTGACCCTGTCTCTAAATAACACATCAGGGTCATTCTTGATTTGCAGTGCCTTTTGGGCATGGCATTTTGGAAGACATTTACTTCATTTTTGTTTAGttgtttttatttaaatgtatttgggtatATCTTCCCATTCTAAATAAATTAATATGGCCGATTAATGACTTTAAGTAATTTTGACGATAACCTTCTGCCACCGCTAGGAGTAGTAACACCAATGATGCCATTATCGTATGTCAGAAAGTGCAACCATTCTGCCTGCACTGTCGGGTTGAGGGACGGGCATCGCGTGGGAGTGACCCACCTGTCAGAAGACAATGTAATGTTGGTAATACCAATGACACATTTTTTGTAATTGAGGATTTTCTTAAATGGAGACCACAGCTGCTCAGATCTAATGTCATTAACCCTTAATTTACTCAAGTTATATGATTAATCGCTCACAATGTAATTTCTCTTCATTTAAATTGATTAGCCTAACACTAATAACACTTTATTTATCCACACCATATTATAACACTCTAAAAGGGTATGAATAGCTAGCAACTTTCTTTAATATAGACTACTCCTGCGATAAGAGTTTTTCTTGGAGAGAATGCTCAAGGTCCTTGTATATCTTTTGTGTAATGAGTCATCTCagaaacccagaactaaaatcttaCGTAATTGCGTCAGATGCTCGATTAGATTCTGGAGGAGATGTATTAGGAAGGATACTAACACGACTAGTGAAGTCTCTTTAAACAATTCATTAAAGATACAGTTTTGCAGTAGAAATGACTTGCTTTATGTTTTATCATTCATAAACAGTTCAATATCAACAAAAAATGTGTATGATGTGTAACTATTTGTCATAAAGTGTTTTTCATGGTTGAAAAGCTGAGGGACGCAAATGCCATCGCAATTCAATTAAATATATAGTCTTTAAGTTATTTCTAAGGAATTGTTTTGTATTATAACTGACTTTCAATAAAGTGTAGTGTTTCAGTGA
>XM_021609517.2
CTGAGAgccaagagagaaaaagagagactgggaccagaggagaggtgctgCCTGGGTTAAACTTAGCAGTGTTAGgctcattttttctctctctttttttcaccTCCTCTTTGTCTGGTTTGAAGGGGGGGGAGCAGATGGCTGGGGCTGACAGAGCAGAGAGCACAACGCCAGTGCGGGCATGAGGAGCTGCTTTCACAGGAACACTGGGCACTGCAGGGAGCCATTCGCGTCTTTCCTTTGTCTCCCATAATTGGCAGAGGCAGGTTTTAACAGCAAGAGAGGAAATCTATGTCGAGAcgaaggaggaggcagagagaaagagagagaaggagagtaaaACAGAGGACCTCAGAGGAGCAGGGGAAGTAGGGGTAAGCCTTGTGACAATGTTTCTCTCCTTTTGGACTATTAACAATGACATTGATGTGTCTTTAACCTGCCAGGTTTGGATGTTTATATCCTAGTATAAACAATGCTATGATCCGGATATCTTTTGGTTTATTTGAAGAGTGGAGCCATTGCAACACGGCCGTATTTGATTCCACAATACCTTTTCACATTTGTTTTGAGCTTGATTTTGGATTGAAAAAAGTACCTATCAATTCCTGATGACATTGTTGCTTGATTATTCACATCATGCTTACCTAAATCATCACAAAGGAGAGTTGATTTCAACAATGAGTGACTTGTTTTTGTAATGTTTTACTGGAAAACAGACCATCATCCACAAGAGAGTTTCTTGAGGAACTGAGAGTTTTATCCCAAAGGGATTGACTCAGCCTACAAACACAACAAGGATTGAGTAATCAGTCCTTTTCATTGGGGACAGGAGAGTTCGGACTCACGTCATTGTCTGGAAGACAGTGACTTATCTGGGGACAATCTCCTCAATCTGTCTGCACCCCAACAAACAAAGACCTAGGACTGGTTGTGACCTCAGACACAGTGACCCTAGTGGCCGTGATTGACTTCAGACGTTTTCACCCCAATCCACTGATTCCCTGGGTCTCTGGCCATCTGGAAGCTGATTTCATGCACCCGGTCCGGTGGTGTAACGGATGTCTGTGCGGTTTAAGATCGCAGATCTCAGACCCTTACGGCAAGATGACATCGGAAGACATCTACAACCTGCCCCTCAACGTGTACGTCATCATCCTGGGCATCGGCCTCTTCATCTTCATGCTCAGCCTGATCTTCTGCTGCTACATGTTCAGGTTAAGGCGACAAGGCACAAGGGAGCAATACGGATATAATGAGCAGACCTGTGCAGTGTGCCTAGAACAGTTCAAAAGCAGAGACGAACTTGGAGTGTGTCCCTGCTCACATGCCTTCCACAAGAAGTGTCTGTTAAAATGGCTGGAGATCCGCAGTGTCTGCCCTATGTGCAACAAACCTATCTGCCGTTTGCAGCCAGACCCCCCACAGGGCGCAGAGAGGCCCCAGAGCCCAATGGaggtgtgagaggagagaaggaccCCACCACAGCACCTCAACACCACTAACTACAGTCCCAACCTGCCTCTCCCAGACCGCCTGACCCCTAAAAATCACACCCTGGTCCAGGTGAAGGGAATCAGGCATTCCATCCTGACCTCTCCCATATATCCCTATCCTAGTTCTGACAGACTATTTAAATCCACTCCACTCTTTGAAGGTGTTAGAGCCCTGCAGGTGTGTGTGAGATAAGACTTTAAAGTGGAACTCATAGAACAATATTGGGGGACAAACTGACAAACTGTCAGTACCCTCCATCCCATGTTGCCAATTGAAGATAGGGTGTCTGATTGGTCGATGAGTAACATAGGACCTGGATGGAGGTGACACCCACATACCACGCTCATAGCTGCCAATATGGGCCTGTGAGGTATCCAGCTATGACATAGGGTACAGTGACCCTGTCTCTAAATAACACATCAGGGTCATTCTTGATTTGCAGTGCCTTTTGGGCATGGCATTTTGGAAGACATTTACTTCATTTTTGTTTAGttgtttttatttaaatgtatttgggtatATCTTCCCATTCTAAATAAATTAATATGGCCGATTAATGACTTTAAGTAATTTTGACGATAACCTTCTGCCACCGCTAGGAGTAGTAACACCAATGATGCCATTATCGTATGTCAGAAAGTGCAACCATTCTGCCTGCACTGTCGGGTTGAGGGACGGGCATCGCGTGGGAGTGACCCACCTGTCAGAAGACAATGTAATGTTGGTAATACCAATGACACATTTTTTGTAATTGAGGATTTTCTTAAATGGAGACCACAGCTGCTCAGATCTAATGTCATTAACCCTTAATTTACTCAAGTTATATGATTAATCGCTCACAATGTAATTTCTCTTCATTTAAATTGATTAGCCTAACACTAATAACACTTTATTTATCCACACCATATTATAACACTCTAAAAGGGTATGAATAGCTAGCAACTTTCTTTAATATAGACTACTCCTGCGATAAGAGTTTTTCTTGGAGAGAATGCTCAAGGTCCTTGTATATCTTTTGTGTAATGAGTCATCTCagaaacccagaactaaaatcttaCGTAATTGCGTCAGATGCTCGATTAGATTCTGGAGGAGATGTATTAGGAAGGATACTAACACGACTAGTGAAGTCTCTTTAAACAATTCATTAAAGATACAGTTTTGCAGTAGAAATGACTTGCTTTATGTTTTATCATTCATAAACAGTTCAATATCAACAAAAAATGTGTATGATGTGTAACTATTTGTCATAAAGTGTTTTTCATGGTTGAAAAGCTGAGGGACGCAAATGCCATCGCAATTCAATTAAATATATAGTCTTTAAGTTATTTCTAAGGAATTGTTTTGTATTATAACTGACTTTCAATAAAGTGTAGTGTTTCAGTGA

Function

NR:

description
RING finger protein 122-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609511.2 False 2919 mRNA 0.43 6 68448729 68460365
XM_036983661.1 False 2236 mRNA 0.44 6 68448729 68460368
XM_021609517.2 True 2884 mRNA 0.43 5 68448729 68460372

Neighbor

gene id symbol gene type direction distance location
pcgf6 pcgf6 coding downstream 3874 68438073 ~ 68444855 (-)
nt5c2a nt5c2 coding downstream 14838 68409513 ~ 68433891 (-)
cyp17a1 cyp17a1 coding downstream 44003 68401582 ~ 68404726 (-)
lbx1a LOC105005765 coding downstream 230187 68215999 ~ 68218542 (-)
tlx1 LOC106576912 coding downstream 279772 68162832 ~ 68168957 (-)
LOC118965304 calhm3 coding upstream 3547 68463919 ~ 68465072 (-)
hells LOC106576686 coding upstream 6578 68466950 ~ 68476455 (-)
LOC110527939 LOC106576682 coding upstream 95626 68555998 ~ 68575122 (-)
LOC110527951 coda1 coding upstream 115007 68575379 ~ 68690343 (-)
LOC118964446 NA coding upstream 245321 68705693 ~ 68742071 (-)
G75916 NA non-coding downstream 11274 68435565 ~ 68437455 (-)
G75854 NA non-coding downstream 68546 68379943 ~ 68380183 (-)
G75852 NA non-coding downstream 70974 68377255 ~ 68377755 (-)
G75848 NA non-coding downstream 75826 68372442 ~ 68372903 (-)
G75846 NA non-coding downstream 77786 68370738 ~ 68370943 (-)
G76134 NA non-coding upstream 92845 68553217 ~ 68553432 (-)
G76341 NA non-coding upstream 240722 68701094 ~ 68701345 (-)
G76369 NA non-coding upstream 266896 68727268 ~ 68727552 (-)
G75682 NA other downstream 237023 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 286727 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 766999 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1060685 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1438142 66965664 ~ 67010646 (-)
LOC118965321 LOC106576963 other upstream 1622468 70082835 ~ 70088715 (-)
G78414 NA other upstream 1894544 70354916 ~ 70355591 (-)
G79616 NA other upstream 2861578 71321950 ~ 71386523 (-)
G79700 NA other upstream 3009310 71469435 ~ 71470755 (-)

Expression


Co-expression Network