calhm2.1 (calhm2)


Basic Information

Item Value
gene id calhm2.1
gene name calhm2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68460100 ~ 68463774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609499.2
GAGGGCAGTTCCCGACGATGAGTCACTGAACATGCCCAGACCccagacaacacacacaaagAGGAATGTTTCTCCCCCCGAACCTACCAGCATGGACTCTTTGGTACTTTAGGAAATCATATACCCATTTTTGCTTTTACTCACAGATTTTGTTTTTCAACCGTTCTACACAAAGAATGTACCTCAAATATCCTATCTCCCGGCTATAGAATCGTGACTCCCCTGTGTGCAAGCTCCAAAATAGGAAAACCCTCCATTGCTCTCCAGTGTCAGACAACACACCAAACATTTCAAAATGGCTGCTCTCATCACAGAGAACTTCAAGTTTGTCTCGCTCTTCTTCAAGAGCAAGGACGTAATGATCTTCAATGGCCTGATAGCCCTGGGCACGGTGGCCAGTCAGACCATGTACAACATATTTGCCTTCGACTGCCCGTGCTCCTCTGGGCGGAACTATCTCTATGGCCTGGCAGCCATCGGGGTGCCCGCCCTGGCATTCTACCTTGTTGGCATCATGCTGAATAAGAGTACCTGGGATCTGGTGTCTGAGTGCCGCCTCAGGAGGTGCCGGAAACTATCGGGGGCGGCTGCCTTCGCCGTCCTGGGCACTATCATTGGCAGAGCGGCCGTGGCTCCAGTGACGTGGGCTGTCATCTCACTGTTACGTGGGGAGGCCTATGTCTGTGCCCTCAGTGAGTTTGTGGACCCTTCAACCTTGGAAGGTTTTCCCTCTggacaggggttagaggtcatggCCAGGTTTCCCTGTAAGTCCACGGTCCCACAGGAGATGCAGGGTTTTTGGGCGGAGATTGAACGCCGGCTGAAGTACGAGTCTCAGCTGCTAGGGTGGCTGATGGTGGCAGGGATGGCAGTGGTTCTGTTCCTCCTGCTGTGCATGAAGCGCTGCTGCTCTCCCCTGGGCTACCAACAGGAGGCGTACTGGTCCCAGTTCCGCTCCAACGAGCACGACCTCTTCCAGCGCACGGCCGACGTGCACTCCCGTATCCTGGCTGTTGAGAGTGTTAAGAGCTACTTTGGCTTCGTGGCcctggagaaagaggagaaacagCAGCTGGAGGAGCACCAGAATGCCAGCCCCATCTCTAGTACAGAGTGGAACCGGATCACTGGGATCTGCTTGTACAGAGAGAAAAGGGGATTGCCCCTCTATAGCCGCCTCAACAAGTGGGCCCAGTACAGTGTGGAGAACAACATAGACGCcatggagaaagagatggacaCTCTGAGCTGACTGGCACTGGACACCCCAGTGTTCTTCAGCCATGATCCTGGGAACCCACTGggagtgcaggcttttgttccagcccagcactgaGACATTCAACTAATTAACTTAATAGTCAAGTCCTTGATTAGTTGAAAGAATCAGGTGTGTAAGCACAGGGCTGGAGCAAAAGCATGTCCACCTGATGTgtccccaggaccagggttgAAGAACACTGACCTGGGTAGATTAGTCTTTTACTTGTATTATcccacatttgtatttattacacCCTTCGGCTAGTGATGGCACCTGATAACTATTGGAAGTAAATTGGAATGGACTCAAATATTGATTGAACTAATGTTCCCAACGTTACACTTTCATTGTTCCCCATTTACTTCTGCTCTCTTCCAGTTTTCAAATGGTTGTAATGGTTGATAAAGGACGATAGTCCAAAGTATTTTTTCGGAGTTTGTGTTTATATGCTTATTGTGTCTAGTTCAGGGTCCATGTTTAACAGAACATTTTATGGAGGTGTTTTACCCTCCCTCTCAATAAGAGACAAGCTCTCAGACTAGATGGCCTGTTACTGTAACATCCTGCACTTCCAAACATCAGCTCGTAGACAGAGCACCGTTTTCTCTGTCAGGGTTCAGTTCTGTTGCTTTTTTCTTCGTAATTTTCTATAAAAACGACCTATTATGCCTGTCGTCCTGGGTATCTCTAAGATAgtcgctgtctgtgtctgtgtctgtctctgtctctgtctctgtctctgtctctgtgtctgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatctgcttGTCTCTCTGACTATCAGATTCACTGGCTGCCTGATTGTCCGACTGTCAAACCCATCTGATTATCTGATTGTCTGCTTATCTGTATAGGACAGTTATCTGAACTCATCACGAGAGGCCTCAGTTGCTCGCGGGGCTGAGTACCCACATGCCCTCCCCACCCCCAGACCAACCCTGGTCTAGAAGCCGTTCATGTGTACCTATCTGTTTGCCTGTTTGTCCTCATGTCTGTCTATGTTACCATGGTCGAGTTCCTGCCCAACTGCATTGCATCAACCGATAGTTGCGTGCCACCATTGCCACGTCATTGACTGTGCAGTCAAGCATCAGATTGCTATATCAAATGATGTTGTTAGCTGATATGTTGAATATGTATCCATGCGTTGTAAGCTCTGGCATGGCGTCTGCAATGTAGTCGACCAGGAACTCAACCCATCTGTCTGCCTGCTGTCTGCCTGCTTGCCTTTCTGCCTATCTGCCTATATGGCTCCTGCTCTGTTGTCGCCTAGTAATAGCTTATAGCTGGAaagagggcaggggagggaggAAAGTAAAATGAGAGGGAAAGTGAGCaaggcagagagaaaggagggggcgGGTGAAAGTAGAGCTGTGATGCAGACAGCGAATCACATGAGCAGGGATATGTTTACAAACTGAGCTGAGGAGGCGTGCTCACTTGCTCCATTATGAGGAAGCAGGACTGAGAgccaagagagaaaaagagagactgggaccagaggagaggtgctgCCTGGGTTAAACTTAGCAGTGTTAGgctcattttttctctctctttttttcaccTCCTCTTTGTCTGGTTTGAAGGGGGGGGAGCAGATGGCTGGGGCTGACAGAGCAGAGAGCACAACGCCAGTGCGGGCATGAGGAGCTGCTTTCACAGGAACACTGGGCACTGCAGGGAGCCATTCGCGTCTTTCCTTTGTCTCCCATAATTGGCAGAGGCAGGTTTTAA

Function

symbol description
calhm2 Predicted to enable cation channel activity. Involved in positive regulation of apoptotic process. Predicted to be integral component of plasma membrane.

NR:

description
calcium homeostasis modulator protein 2

GO: NA

KEGG:

id description
K19739 CALHM2; calcium homeostasis modulator protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609499.2 True 3115 mRNA 0.50 3 68460100 68463774

Neighbor

gene id symbol gene type direction distance location
pcgf6 pcgf6 coding downstream 15245 68438073 ~ 68444855 (-)
nt5c2a nt5c2 coding downstream 26209 68409513 ~ 68433891 (-)
cyp17a1 cyp17a1 coding downstream 55374 68401582 ~ 68404726 (-)
lbx1a LOC105005765 coding downstream 241558 68215999 ~ 68218542 (-)
tlx1 LOC106576912 coding downstream 291143 68162832 ~ 68168957 (-)
LOC118965304 calhm3 coding upstream 145 68463919 ~ 68465072 (-)
hells LOC106576686 coding upstream 3176 68466950 ~ 68476455 (-)
LOC110527939 LOC106576682 coding upstream 92224 68555998 ~ 68575122 (-)
LOC110527951 coda1 coding upstream 111605 68575379 ~ 68690343 (-)
LOC118964446 NA coding upstream 241919 68705693 ~ 68742071 (-)
G75916 NA non-coding downstream 22645 68435565 ~ 68437455 (-)
G75854 NA non-coding downstream 79917 68379943 ~ 68380183 (-)
G75852 NA non-coding downstream 82345 68377255 ~ 68377755 (-)
G75848 NA non-coding downstream 87197 68372442 ~ 68372903 (-)
G75846 NA non-coding downstream 89157 68370738 ~ 68370943 (-)
G76134 NA non-coding upstream 89443 68553217 ~ 68553432 (-)
G76341 NA non-coding upstream 237320 68701094 ~ 68701345 (-)
G76369 NA non-coding upstream 263494 68727268 ~ 68727552 (-)
G75682 NA other downstream 248394 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 298098 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 778370 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1072056 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1449513 66965664 ~ 67010646 (-)
LOC118965321 LOC106576963 other upstream 1619066 70082835 ~ 70088715 (-)
G78414 NA other upstream 1891142 70354916 ~ 70355591 (-)
G79616 NA other upstream 2858176 71321950 ~ 71386523 (-)
G79700 NA other upstream 3005908 71469435 ~ 71470755 (-)

Expression


Co-expression Network