LOC118965304 (calhm3)


Basic Information

Item Value
gene id LOC118965304
gene name calhm3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68463919 ~ 68465072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965304
TGGACCTGGTCTAGCTCATGGCCAAGGTGTCTTGCGAGGAGGACTTGGTCTTCAGGAATATCACATTCCGTAAAGCTGTTTCACGCTACGTGCGCCGCTACTCCCAAGCTATTGGATGGtctatcctcctcttcttcattctTTTGGGTGCACTGGGCCGTCTCATCAAGCCCTCCTTCAATGACCATGCCACCAACCTTCGGGCACGCTACTGGAGCAACTACCTCGAGCAGAAGCCCTTCGACTAGACGTGCGTGCTGCGGTTTTGCCCGCAAGTGCGTGGTGCAGTTCTTCGAGGGCATGCGGGAAGACGCAGTGCGAAGACTGCCTCTCTCACCCGAAGTCAGGTACAGGAGGAAAGAAGAtatggtggaagaggaggaggagagactccATGGGATTACCCAGCAGGAACAGATGGATCAGCTGCTTCAAACATGGTTCCAGTGTAAACCTGAGCTGGATGTCACTAGAATGGCCTACAGGCCTAGAGTGTGTGTCACCTGGGAGGACGACAATGGAAAAACCCTCTACTCAGacgtttagatgtgtgtgtgattgtgtaaaTAGTACTTATTCGCTTATTACTGTTTTCCATGGGCTGCATAATATAGAGTGTACCTAGAAACTATGTGCCTGGGGGTATTGGAATGTGCTGGGATTTAGACTGACTTGTTCTGCATAGTTCATTTTACATACTGCTCAACTCCATAGATATCAGACAGATGCAAATTAGAGATGGACTGAGTTATTCAACACTTTACATTATGCTAGTTATTCTTCAAAAGGTACCTGGTACTAATGGTGATAGATTTAATGAATCCCAAAGTAATTCATTGGTTACTACTGTGTAATTACCATTTTACCATACATGTGTTTTGGTAAACAACTGGTCATttctgtactgtaaaata

Function

symbol description
calhm3 Predicted to enable cation channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CALHM3 (calcium homeostasis modulator 3).

NR:

description
PREDICTED: calcium homeostasis modulator protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965304 True 914 mRNA 0.46 2 68463919 68465072

Neighbor

gene id symbol gene type direction distance location
calhm2.1 calhm2 coding downstream 145 68460100 ~ 68463774 (-)
LOC110527905 LOC106576688 coding downstream 3547 68448729 ~ 68460372 (-)
pcgf6 pcgf6 coding downstream 19064 68438073 ~ 68444855 (-)
nt5c2a nt5c2 coding downstream 30028 68409513 ~ 68433891 (-)
cyp17a1 cyp17a1 coding downstream 59193 68401582 ~ 68404726 (-)
hells LOC106576686 coding upstream 1878 68466950 ~ 68476455 (-)
LOC110527939 LOC106576682 coding upstream 90926 68555998 ~ 68575122 (-)
LOC110527951 coda1 coding upstream 110307 68575379 ~ 68690343 (-)
LOC118964446 NA coding upstream 240621 68705693 ~ 68742071 (-)
LOC110528038 LOC106576680 coding upstream 304153 68769225 ~ 68848669 (-)
G75916 NA non-coding downstream 26464 68435565 ~ 68437455 (-)
G75854 NA non-coding downstream 83736 68379943 ~ 68380183 (-)
G75852 NA non-coding downstream 86164 68377255 ~ 68377755 (-)
G75848 NA non-coding downstream 91016 68372442 ~ 68372903 (-)
G75846 NA non-coding downstream 92976 68370738 ~ 68370943 (-)
G76134 NA non-coding upstream 88145 68553217 ~ 68553432 (-)
G76341 NA non-coding upstream 236022 68701094 ~ 68701345 (-)
G76369 NA non-coding upstream 262196 68727268 ~ 68727552 (-)
G75682 NA other downstream 252213 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 301917 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 782189 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1075875 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1453332 66965664 ~ 67010646 (-)
LOC118965321 LOC106576963 other upstream 1617768 70082835 ~ 70088715 (-)
G78414 NA other upstream 1889844 70354916 ~ 70355591 (-)
G79616 NA other upstream 2856878 71321950 ~ 71386523 (-)
G79700 NA other upstream 3004610 71469435 ~ 71470755 (-)

Expression


Co-expression Network