LOC110528049 (LOC106576681)


Basic Information

Item Value
gene id LOC110528049
gene name LOC106576681
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68762793 ~ 68769165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609836.2
TAGCCTTTACACTAGGATGGACtggagtgtctatgtatgcatcCACAATTTGTGTTCTACACATAGCCCAAACCTATCTCTAGGTATCTATAGGTATACAAAGCCAAattctgttttatttctttaagcACTTCGCGTTCATTTCAGCCAACATTCTTCTCCCCTGGAAGCCATGTTAAGGGGGCGTTTCATTCTATTTTCCCCTGGAATTATTTTTTTCACTttgcagcatcagtagtagcgTTGAGCCAGCCTCCTATGAATGTACGGTGGTTGTGGCTGTAGTTTTTTTTTAGGAACAGGATACGCATAAGGACagcgaagaaaaaaaaacatagcaaTTCCTCGGGGGATTTGTGAAAGGGAAACTCAGGTCTGCATTTATTCGTGTAAAGGACGACAAACAGGTAGACATAGCTGAGGCAAGATGTCAGCCCGAGGAGGAAAGAAGAAGACCACCAAACTGTCCCGCTCCGCCAGAGCAGGAGTCATCTTTCCTGTGGGGAGGATGATGAGGTATCTACGCACAGGGACGCACAAGTACCGCATCGGCATGGGGGCACCCGTCTACATGGCAGCCGTCATAGAGTACCTGGCAGCTGAGATTTTGGAGTTGGCAGGGAATGCAGCAAGGGACAACAAAAAAGGCAGAATAACTCCTCGGCACATTAAACTGGCTGTCGCCAATGACGAGGAGCTCAACCAGCTCCTCAGAGGGGTGACCATATCAAATGGAGGGGTCCTGCCTCGCATCCACCCTGAGCTGCTGTCCAAGAAGAGGGGCAGCCGAGTGAAAGTGGACACTCAGGTGACCGTGCCAGAGAAGAGGGCGGAACGCGTCAAGAGCATCAAGAAACCTACCACCAAAAAAGGCAAAGGCAAACCAGGTCGCAAGCAGAGGAAAAACACGGAAAACGACAAAGAGGCTGTTGTCGCTAACTCAACAGTGGAAGATGGGCCAGGGGATGGCTTCACCATCCTCTCAGCGAAAAGCCTGTTCCTTGGACAAAAGCTTTCACTAACAGAGAGTGAAATTAGCAAAATTGGAACCATCAAGGTGGAGGGAATCATCAACCCCACAAATGCAGAGATGGACCTCAAAGAGGGAGTGGGCAGTGCCCTGGAGAAGGCAGGGGGGCGAGACTTCTTGGAGGCAGTGAAAGAACTGCGGAAAGCACAGGGACCTTTGGAGGTAGCATCAGTTGCGGTGAGCCAGGCCAGTGGGATGCCAGCTCGTTTTGTCATCCACTGTAACATCCCTCAATGGGGCTCAGAGAAGTGTGAGGACCAGCTGGAGAAGACTGTCAAGGCCTgcctctctgctgcagaggagaagaaACTCAAGTCTGTTGCCTTCCCCTCACTTCCTGCTGGCCGGAATGGATTCCCAAAGCAAACAGCCGCCCAGCTGATCCTCAAGGCCATCTCCAACCATTTTGTCTCTGCGACGACCTCCTCCCTGAAAAACATTTACTTTGTACTGTTTGACAGCGAGAGCATCGGAATATACCTTCAGGAAATGGCCAAGCTGGATGCCAAGTGAAGCTGAGCTGAAGAGATGCTTGATTTGAGGTGTTTTTTTTAACGGTTGCAGTTGTATTTCAGATGGATCTTTGTTTTTTGCAGCTGATATAGTGTGATCAAAGGTGCTGTAAGTAGGCGTTTTTGACATTGGATAGCCCTCGGAaggcgaaaaaaaaaaaaatatgtttgtgAGTGAAGTACTGTACGCATTTATGTTACACTGTCTTCCTTTTACAGGATTGCATTCTTTCTTTTTAGACTAGACTCAATAATCCCATGGCTTGTCATTCTTATCCCATATTTACTGATATTGTTTTCACATTCCATGTACAAAGACAATTTTGACGGTTGTTTTTTCTGCTAGAATCCCTCTGTAGTTTCTGATACAGTTAGTTTACTAAGAAAAGTGTTTCTCATTCTGCTTTGAAATAAAAATCCAGATGTTTTACACCACA

Function

NR:

description
core histone macro-H2A.2-like isoform X2

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609836.2 True 1979 mRNA 0.47 9 68762793 68769165

Neighbor

gene id symbol gene type direction distance location
LOC110528033 NA coding upstream 115237 68645772 ~ 68647556 (+)
LOC110527930 LOC106576683 coding upstream 214396 68519794 ~ 68548397 (+)
LOC118965305 NA coding upstream 267703 68486914 ~ 68495090 (+)
LOC118966747 NA coding upstream 307900 68454837 ~ 68454893 (+)
inaa ina coding upstream 325254 68434566 ~ 68437539 (+)
LOC110528057 LOC100136798 coding downstream 83273 68852438 ~ 68874903 (+)
LOC110528130 pla2g4f coding downstream 450557 69219722 ~ 69243901 (+)
LOC110528139 LOC106576938 coding downstream 486229 69255394 ~ 69266554 (+)
LOC110528148 LOC106576939 coding downstream 499093 69268258 ~ 69287876 (+)
edaradd LOC106576942 coding downstream 606621 69375786 ~ 69385855 (+)
G76264 NA non-coding upstream 2953 68759542 ~ 68759840 (+)
G76241 NA non-coding upstream 35658 68726917 ~ 68727135 (+)
G76226 NA non-coding upstream 53608 68708864 ~ 68709185 (+)
G76213 NA non-coding upstream 64938 68697407 ~ 68697855 (+)
G76212 NA non-coding upstream 65510 68697054 ~ 68697283 (+)
G76439 NA non-coding downstream 126621 68895786 ~ 68896169 (+)
G76443 NA non-coding downstream 132342 68901507 ~ 68901737 (+)
G76457 NA non-coding downstream 153003 68922168 ~ 68922377 (+)
G76458 NA non-coding downstream 153776 68922941 ~ 68923247 (+)
G76498 NA non-coding downstream 155340 68924505 ~ 68924725 (+)
G75747 NA other upstream 387864 68374505 ~ 68374929 (+)
G74139 NA other upstream 1977824 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 2003809 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 2338712 66417495 ~ 66424081 (+)
G73515 NA other upstream 2474324 66287679 ~ 66288469 (+)
G78121 NA other downstream 1802500 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 2267305 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 4782451 73551616 ~ 73571737 (+)
G83836 NA other downstream 6140060 74909225 ~ 74909806 (+)
G83829 NA other downstream 6343495 75112660 ~ 75114190 (+)

Expression


Co-expression Network