LOC110528072


Basic Information

Item Value
gene id LOC110528072
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68909178 ~ 68923306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474184.2
ACCTGGTTTATGTAATCACTCAGCAAAACGTCTGTCACCCAGCCAGAGTCTGCAGCATAGTTCTTCATAGGACATCATAGGAACTTCTTCCAAAAGATAAGCCAAAAAAAGCGAGCAGGTTGAGACAGCAGTGAatgaggtggagagggcagaacAGCCAAGGAGTCAaagtgcagcagcagcagagttAGCCACAGATGAGCCAAGGAGGATAACAGATGAGAACAACAGGCCAGTGGAGTACTTAGAACAGCAGCAGCCAGGGGAAACTGGTAGGGAAGAAGATGCTTTAGGTGACCCAGACATAGGCCCAAAACAAGTTAAGCTACCCCAGTATCCCCTTGACCGTTTTGGATTGAAAAACTAAAGAGATGCACCAGACAAGACACATATAGGCAGCAACAGAAGAGTAAATGATGGAGAGACACGAGGCAAGACACAGAGATAGCAAACTAAGAATAGGATATGATTGAGCGAGACACCAGAAGAACGGAACAGGCCATAACAGAAGAAGGAAGACCAAGAAGACATTAACAAACAAGAACCTGagacagcaatggacaagacacaGATAAATTGACAAGAGGGCAGATgaagagagaacagagAACAAATAACTGCAACAGAGTGGAGGGAGATGCTGCTCAATCTTGGTGGCACCATACATGGGGCGCAGGgggttgatgatgtggttgttccAGCGGAACTTCATCCCAGTCAACTCGACAATGTCCGTCTCAGCATCGATGAAGAGcttgtcctgtaggttttattAGGTCTCAGGAGGCCACTTTAGGAAAAAGCAGAACATTTTCATTCCTTTAGTCAGTTTAGATTGGGGTAGGGTCAGCCAGTTGTCCTATGAATAGATCTTTCTGTTATTCAAGTCCAACAGTCTTCAGAAATCAAAATTATTTTATGGGCTATGATGTTGTCACTTACAATTAGAAGAATGAAATAgaaatgaaaccatttaaaaCAGGTGTGTGACATAACATCTCAACTCGTCTATAAGCTAGTTTATATCAGGAGtagtcacatacagtacatgttaacCTGATACTGGCGAGTGTTGCCATGCTCTTCATACAGAGCTATATGTTCATTATCCCTGGCTGGGATCTTCTGCCATCGATGGTTACATTTGCTTTGTAGCGGTACCCAGGAATTTgaatacagtgctttcggaaactattcagacccattgactttttccacattttgttacattacagccttgttctaaaatgtattaaataattatTTACAGGCAAAGGGCTCAGCATCTCCGGTGTTCAGGTAGAACTTCATATTGGATTGTCCCCTGGGGATGGGGAACGTGTCAACATAGCGACCCATAATGGGACATGCTTTGTCTGCACATGGGAAACAcctctaaaaacacacacacacacagaatcaggtGAAATATGTCTTCATGCGGTCAAGGTGTATACATTGATGTTAGACAGTGGATTTGATAGGGCAGAGGGACCCGAATAtagaagatatatatatatatatatatatactgcatgGTAAGGTATAGAAATATCATTTGTAGATGTTTGTACTTGGGGCCATAGAATTGAGGTATTTCAGTTTGAAAATAAAGATTAAAGCTTAGTATTTATAAACAATTGCCATTTGTGGCCATTCAAGAGGATTCAAAAGGATATAAAAGCATTGGTCAGCTCATTTTGCACCTTTCATAAACCATTATAAGTCACTGAGCTGCTGTTAATATTCTACTCAAGGTGAAATGTGAaaagggatcttttattttacgATCCAGCGCTTTCAACATCTTTACGCCTACACTCCGAAGCCCCTCTGTGGGTAATCATCTTTTCTTATTGCAGTTTCTCACCAAGCACAGGTGGccagtggcaccttaattggggaggacgggctcatagtaatggctggaacagaataaatggaatggtatccaacacatcaaacacatggttgccatgtgtttgatgccattccattcaccccattccagccattattaagtgccgtcctcccttcagcagcctcctgtggactGTCAACGCCCTTGGCTTTTCGAGTACCCCCAAGCAGAGGGAGAACCCTCTAAGACTTTTTTCTCTCCTCTTAACTTTTATGTGTCTTAGATCACCAGCCTATTAATATGTAGATCAGGATGACATCAGTTTATAGTGGTTTATAGTGTGGGAACAGCAGAGTTTATGGCTGTCAACTGGGCGAAGGAATAACACCCAAGGGCGTTTACGAGGTGAACAACAAGGAGGCGTCTGTCGGCTTCTCTGGGGACATAGTCATATGAGGTCATGCACCACGCTCCCGAGCTGTTTGATTGGGACGTGACCTAGAGCAGGGATAAGCTTTCATTAACGTGGACAGCTGCAGACGAAGGCCCCTCCCATAGAAAGAATGGGGGAAGCCTGTCTGCTGTGGTCCTCGCTGAACCCAATCCCGACGAATCAACTTCTAAAACCATAGAAACGGTTCACAGCCGTATCAATATCATGTACAACAACAGGtggtacccctccacacacaccccgATCAAGAGCCGTCTTTGCAGGCAGCAATGCACACCCGAATAAAGTAAACacttaaagtaaaaaaaaacagtGGCATGCATTGATATGCAATGGCTTTCTCGTGGCTTTCTTTTGCAAAATAACTATGAATTAACAGACATTTAATAATTGgcaacatacactgagtataccaaacattaggaacatcttcctgattttgagttgcaccccccccccccccccccttttgtcctcagaatagcctcaattcgttggggcttGGAcgttacaaggtgtcgaaagtgttccacagagattctggtccatgttgactccaatgcttcacacagttgtgtcaagttggctggatggcctttgggtggtggaccattcttgaacaCGCGGGAAACTGTTGAAAACCCCAgctgcgttgcagttcttgacacaagccgatgcgcctggcacctactaccattccccattaaaggcacttaaatcttttgtcttgcccattcgtcctctgaatggcacacatactggcttactggtgc
>XR_005052641.1
ACCTGGTTTATGTAATCACTCAGCAAAACGTCTGTCACCCAGCCAGAGTCTGCAGCATAGTTCTTCATAGGACATCATAGGAACTTCTTCCAAAAGATAAGCCAAAAAAAGCGAGCAGGTTGAGACAGCAGTGAatgaggtggagagggcagaacAGCCAAGGAGTCAaagtgcagcagcagcagagttAGCCACAGATGAGCCAAGGAGGATAACAGATGAGAACAACAGGCCAGTGGAGTACTTAGAACAGCAGCAGCCAGGGGAAACTGGTAGGGAAGAAGATGCTTTAGGTGACCCAGACATAGGCCCAAAACAAGTTAAGCTACCCCAGTATCCCCTTGACCGTTTTGGATTGAAAAACTAAAGAGATGCACCAGACAAGACACATATAGGCAGCAACAGAAGAGTAAATGATGGAGAGACACGAGGCAAGACACAGAGATAGCAAACTAAGAATAGGATATGATTGAGCGAGACACCAGAAGAACGGAACAGGCCATAACAGAAGAAGGAAGACCAAGAAGACATTAACAAACAAGAACCTGagacagcaatggacaagacacaGATAAATTGACAAGAGGGCAGATgaagagagaacagagGTCAGCATGGATCAAGGGTCTGGTGCACGTTTTCACGCACCCTCTTCTTTCCACAGAACAAATAACTGCAACAGAGTGGAGGGAGATGGTAAGTCAGTGGAACGTGAATGGGAAAACGTCTATCACAGATGGTGGTCCTACACTGCCCTCTAGTGTTTTACAGAACAGACATCTTTCAGAGAGCTGCTTTACTTCTCAAGATTATCCCttgttatacagtatattaaaGGATACAGTCCATGTTTGCCTgtgtatacaatatatatatattttttactagtAGCATGTAATTTAATGTGTTCCTCCCTTCATAGGTTTACATTCCAAACCAAATGTAGAGTTACGCTTCGAACACACCGACCGTGTCATTGCATTGtggtacaccagaattacattaatttccaaagaaacgctgcgtttgccttgcagcattgcgttgcagaggcagttgcagtgcgttcggtGTGGTGCGTAcgttggatttatcgaacgtaTGCGTCAAACTGTTTGCGTAAAcgacttgacagaaatggtagcagagggtgaatgttgaacttttgttgcatacatatccagatgatACTGCGTGCTATATTGCGCAATGACTCTGTTGGTGTGTTCGAAGCGTTAACCATAAACATCTGTATATGGGTGCATAGGCAGTAAATCATAATGCGGTAATAGTTTTGTTAGGGCTGAGTTTGAAGCCTCAGGGGGCCATATTGGCACTAGGGGGTGTACAGCTAGCATTAACAGAATGCCCTTGCTTGTCCTCCTGAGGCTCAGACAGCTGCCACACAAGTGGGACTTGCAGGGCTGGGAGGGTAGATAGacatgcagggcagcctggcaggatagacagagagactgacgtACAATTTGCTATCCTTCCCTCGCAGCTGCTCAATCTTGGTGGCACCATACATGGGGCGCAGGgggttgatgatgtggttgttccAGCGGAACTTCATCCCAGTCAACTCGACAATGTCCGTCTCAGCATCGATGAAGAGcttgtcctgtaggttttattAGGTCTCAGGAGGCCACTTTAGGAAAAAGCAGAACATTTTCATTCCTTTAGTCAGTTTAGATTGGGGTAGGGTCAGCCAGTTGTCCTATGAATAGATCTTTCTGTTATTCAAGTCCAACAGTCTTCAGAAATCAAAATTATTTTATGGGCTATGATGTTGTCACTTACAATTAGAAGAATGAAATAgaaatgaaaccatttaaaaCAGGTGTGTGACATAACATCTCAACTCGTCTATAAGCTAGTTTATATCAGGAGtagtcacatacagtacatgttaacCTGATACTGGCGAGTGTTGCCATGCTCTTCATACAGAGCTATATGTTCATTATCCCTGGCTGGGATCTTCTGCCATCGATGGTTACATTTGCTTTGTAGCGGTACCCAGGAATTTgaatacagtgctttcggaaactattcagacccattgactttttccacattttgttacattacagccttgttctaaaatgtattaaataattatTTACAGGCAAAGGGCTCAGCATCTCCGGTGTTCAGGTAGAACTTCATATTGGATTGTCCCCTGGGGATGGGGAACGTGTCAACATAGCGACCCATAATGGGACATGCTTTGTCTGCACATGGGAAACAcctctaaaaacacacacacacacagaatcaggtGAAATATGTCTTCATGCGGTCAAGGTGTATACATTGATGTTAGACAGTGGATTTGATAGGGCAGAGGGACCCGAATAtagaagatatatatatatatatatatatactgcatgGTAAGGTATAGAAATATCATTTGTAGATGTTTGTACTTGGGGCCATAGAATTGAGGTATTTCAGTTTGAAAATAAAGATTAAAGCTTAGTATTTATAAACAATTGCCATTTGTGGCCATTCAAGAGGATTCAAAAGGATATAAAAGCATTGGTCAGCTCATTTTGCACCTTTCATAAACCATTATAAGTCACTGAGCTGCTGTTAATATTCTACTCAAGGTGAAATGTGAaaagggatcttttattttacgATCCAGCGCTTTCAACATCTTTACGCCTACACTCCGAAGCCCCTCTGTGGGTAATCATCTTTTCTTATTGCAGTTTCTCACCAAGCACAGGTGGccagtggcaccttaattggggaggacgggctcatagtaatggctggaacagaataaatggaatggtatccaacacatcaaacacatggttgccatgtgtttgatgccattccattcaccccattccagccattattaagtgccgtcctcccttcagcagcctcctgtggactGTCAACGCCCTTGGCTTTTCGAGTACCCCCAAGCAGAGGGAGAACCCTCTAAGACTTTTTTCTCTCCTCTTAACTTTTATGTGTCTTAGATCACCAGCCTATTAATATGTAGATCAGGATGACATCAGTTTATAGTGGTTTATAGTGTGGGAACAGCAGAGTTTATGGCTGTCAACTGGGCGAAGGAATAACACCCAAGGGCGTTTACGAGGTGAACAACAAGGAGGCGTCTGTCGGCTTCTCTGGGGACATAGTCATATGAGGTCATGCACCACGCTCCCGAGCTGTTTGATTGGGACGTGACCTAGAGCAGGGATAAGCTTTCATTAACGTGGACAGCTGCAGACGAAGGCCCCTCCCATAGAAAGAATGGGGGAAGCCTGTCTGCTGTGGTCCTCGCTGAACCCAATCCCGACGAATCAACTTCTAAAACCATAGAAACGGTTCACAGCCGTATCAATATCATGTACAACAACAGGtggtacccctccacacacaccccgATCAAGAGCCGTCTTTGCAGGCAGCAATGCACACCCGAATAAAGTAAACacttaaagtaaaaaaaaacagtGGCATGCATTGATATGCAATGGCTTTCTCGTGGCTTTCTTTTGCAAAATAACTATGAATTAACAGACATTTAATAATTGgcaacatacactgagtataccaaacattaggaacatcttcctgattttgagttgcaccccccccccccccccccttttgtcctcagaatagcctcaattcgttggggcttGGAcgttacaaggtgtcgaaagtgttccacagagattctggtccatgttgactccaatgcttcacacagttgtgtcaagttggctggatggcctttgggtggtggaccattcttgaacaCGCGGGAAACTGTTGAAAACCCCAgctgcgttgcagttcttgacacaagccgatgcgcctggcacctactaccattccccattaaaggcacttaaatcttttgtcttgcccattcgtcctctgaatggcacacatactggcttactggtgc
>TU84531
GCAACAGAAGAGTAAATGATGGAGAGACACGAGGCAAGACACAGAGATAGCAAACTAAGAATAGGATATGATTGAGCGAGACACCAGAAGAACGGAACAGGCCATAACAGAAGAAGGAAGACCAAGAAGACATTAACAAACAAGAACCTGagacagcaatggacaagacacaGATAAATTGACAAGAGGGCAGATgaagagagaacagaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgggctgctgctccagtttcaactgttcttcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctatagagacagcaggagtggtagagatactcttaatgatcagctatgaaaagccaactgacattttccatttactcctgaggtgctgacttgctgcaccctcgacaactactgtgattattattatttgatcatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactagccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttcttgggagtttttcctagccactgtgcttctacacctgcattacttgctgtttggggttttaggctgggttttttgagcactttgagatatgagctgatgtaagaagggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474184.2 False 3088 mRNA 0.44 4 68910098 68923306
XR_005052641.1 False 3955 mRNA 0.44 3 68910098 68923306
TU84531 True 759 lncRNA 0.47 2 68909178 68921945

Neighbor

gene id symbol gene type direction distance location
LOC110528038 LOC106576680 coding downstream 61429 68769225 ~ 68848669 (-)
LOC118964446 NA coding downstream 168027 68705693 ~ 68742071 (-)
LOC110527951 coda1 coding downstream 219755 68575379 ~ 68690343 (-)
LOC110527939 LOC106576682 coding downstream 334976 68555998 ~ 68575122 (-)
hells LOC106576686 coding downstream 433643 68466950 ~ 68476455 (-)
LOC110528078 LOC106606490 coding upstream 18266 68941572 ~ 68989407 (-)
shtn1 shtn1 coding upstream 123639 69046945 ~ 69095234 (-)
atp6v1ba LOC100136607 coding upstream 173575 69096881 ~ 69141094 (-)
vax1 LOC106576936 coding upstream 246214 69169520 ~ 69179563 (-)
LOC110528163 LOC106576940 coding upstream 365147 69288453 ~ 69363097 (-)
G76492 NA non-coding downstream 9220 68900628 ~ 68900878 (-)
G76491 NA non-coding downstream 10182 68899654 ~ 68899916 (-)
G76369 NA non-coding downstream 182546 68727268 ~ 68727552 (-)
G76341 NA non-coding downstream 208753 68701094 ~ 68701345 (-)
G76499 NA non-coding upstream 7931 68931237 ~ 68938082 (-)
G76500 NA non-coding upstream 16230 68939536 ~ 68939755 (-)
G77235 NA non-coding upstream 380446 69303752 ~ 69304024 (-)
G77276 LOC106581475 non-coding upstream 440925 69364231 ~ 69364549 (-)
G75682 NA other downstream 698392 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 748096 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 1228368 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1522054 67386509 ~ 67389299 (-)
LOC118965321 LOC106576963 other upstream 1159534 70082835 ~ 70088715 (-)
G78414 NA other upstream 1431610 70354916 ~ 70355591 (-)
G79616 NA other upstream 2398644 71321950 ~ 71386523 (-)
G79700 NA other upstream 2546376 71469435 ~ 71470755 (-)
G79904 NA other upstream 2819739 71743045 ~ 71743809 (-)

Expression


Co-expression Network