shtn1 (shtn1)


Basic Information

Item Value
gene id shtn1
gene name shtn1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69046945 ~ 69095234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609911.2
TTGTAATCGTGACCTCTGAAGCGCCGCTGATAGCCTTCCTGCAAGCCTGCCTGAtTGAACCGGCAGAACTGCTCCTTGAAGAGGAAGAGTATGTTGTACCTGGCCCACCTGGGGCCGGAGACCATTGCTGAGATCGGCCTggaggatgaagaagaggaagaggagagtgtgGACACCCAGGTAGAAAAAGAGTGCTTCTCAGCCCACTGCCAGAGCACCATCACAGAACTGAAGAAAAAAATTGAGTTGACACTGGAGGAGAAAAAGCAAGCCACCATTGATCATGAGGCTACAAGAGAGGAGCTAAGTGACATCAGAGAAGAATTGCTGAAGGAAAAACATGATAATATGGTTTTGATTGCTGAGACAGTCCGACAAAAGAAGCTCTTGGCGAAATATAACAGAGTGTCGCTGTTTGCCGTGGAGGAGTATGAGGCCCTGCAGGAAAACCTGGATCTGGAGAAGGAGCTGAGGGCAGAGGCAGAGATATTTGCACGAGAGATGCTGGTTGAGCAGAAGAAGCTGAACAGACAGAGTCAGATTCTCCTAAAGAGCTCATCACCCAGTGATACCCTGCAGGCAGCCCTCACTGATGTCACCAGGCTCACCCAGGCCCTGGAGAGCCAGAGGCTGGTGCACCAACAACAGATGAAGGGGATTGAGGAGCAGCTCAGGGGTTCAGAGCTACATAAGGAGGTGCTGGCGTTACAACGTAAGCTAGAGCTCCTggcagaggagaagagggagcacGAAGAGAGATATTCCACGGCTAAGGTGGAGGCCAAGGATCTCAAGTTTACTGTAGAGGAGCTGCAGAAGAAGCTCCAGGCCCTTTCTAACCCTCCGCCTGCTCCAGCCCCTGCACCTCCGCCCCCgccaccccctcctccaccaccagccCCTCTCACCAACCCTCTCGGTTCACTGCTATTGATGATTCGCAAAAAGAAAAATATCAGTAGGGATATTCCATTAGTGGTTCAAGACTCAGCAAAGGAGCCAGAGATGGACATCAGGCAACAAGCTGTGGATGAGATGATGCAGAGAATCAAAAGGGGGGTTCACCTCCGACCCGTGGGCCAGGCCCCCAACAAAACCAAGCCCGTCCAGCGAGAAAGGGTACCCTCTAATTCTGCCATTCAGGAACTTAAAGGAATTCTGGACACTTTCAAAAGGCCCTCCCCCCACCTTAAAGTTGGATCTCCATCAACAAACACTGAGTCTGAGCTGGAGAGAGTTCTACAGAGACGACGGGGCGCATTCAGGACCTCACAGGAAAGTTgTTCACCGTCCTCACCTCGTCCCTTCCCCAGCAGTGTTCTGGATGTCACCAGAGTGAGAGGGGACCAGCCCCAGACCAAGCAGACCTCCCAGGACTCTGTCCCGCTCTAGGCCCACTCAGCTGACCTGAGTTCTGGCCACTAGCACCCTAGATCCCTGGACAAGAGACCTGCACCTGTCAATGCTGCAGTCAGCTCTCTGGTGAAGGAAAGAAGACCTCAGAGTACAAAGCATGTCTGGTGTCCCCACTGCACTACACAGGGTTGTGGAGTAAACTACATTTGGTCCAACTAGTAATTGAATTACATTTtgcagtaggttggtggtagttgaactaaattcaaatctaAGTAGGGTTTTCAGTAGGTAATAATTTTTTTGCCATGTAGCTAACTCCTGGAACTACACACCACTTTTTTTTCACAAAATGAAAAGATAATATGGGTTTTTTTCggcatcagacctgcctaattctcacttgaaacagtTGTGTTTAACAGGCTAAATGACACATTCAGATACATATGATAATTTTTCAcgaagtagtttggatgtagtgaactactttttcaaagtaacttcagttaattaaactatatttttcttaaggCTAGCTTTAGTTTAGCTTAAATTCtttcagtgtgaagtaattggtaaacTATCTTTTCAGATTAGCTACCCCAACACTGGCATTATACCAAAAATGGAAATGTCATAAACCACATAAAAATAATGGTTATTAAATGGACAGGTTTATTCAAAATAATATTGACCACTGTGTCTTACATAAtctttttgtatgtgtgtgtattttttattCTTTGGAATTTGCAAATATATGTGTAACTATAATTAGTTTATTTCCAGAGTATGTGATGCCAAATTGTGATTCCTTTATGTGGTCATTTTGATCAATTCAGTTTTGTTTCCAAGGAAAAATACAGATCAACGCTGCATTTGGTTAGCGTGAAACCTTTTTGCACTAAGTGACGACTGAAAATTCATTCATATTAATATGGGAAGAAATGTAATGGTGTATCATTTAAATAGATTGTATGAGCTATTCATTTTAAGACTAGTAATTACATTAGATTGACGTAAACATAAATAGAAAATGTCATTTTGGAATAAAAACACTATGGTATTCATTTAA
>XM_021609890.2
CACAAACCCTTGATCAAGGGAAAAAACAAGCATTCGAAGCCTAGTTCAGATTTAACAATGGCCAAAGGTGAGATTTGTGCACAGGTGTGTCGCGGTATCAAGGTATTTCCTGTTGCACGTAATGTGTAACCACCTCGATGTGTACTGTAAATGTACTTTCTCACAATGGCGGCCCAAGAGGAACTATTTCAAATGAAAATCATTACAGAGCTGTCCAATCAAGCTGTCCATGAGTATGAGGGTCTTCAGAGGGAGCACGAGAGAGCCACCATGGAGTGTCAAcggatggaggcagagagagacgagGCAATCAAAAGGCTTGAAGAGTTTCAAAAAGTGTCCCACATGGTCATTGAAGAGGTCAACTGCATTCAGGATAACCTGGACATAGAGAGGACATGCAGACAGAGTGTGGAAGCCCTGGCCTCCAAGtTGAACCGGCAGAACTGCTCCTTGAAGAGGAAGAGTATGTTGTACCTGGCCCACCTGGGGCCGGAGACCATTGCTGAGATCGGCCTggaggatgaagaagaggaagaggagagtgtgGACACCCAGGTAGAAAAAGAGTGCTTCTCAGCCCACTGCCAGAGCACCATCACAGAACTGAAGAAAAAAATTGAGTTGACACTGGAGGAGAAAAAGCAAGCCACCATTGATCATGAGGCTACAAGAGAGGAGCTAAGTGACATCAGAGAAGAATTGCTGAAGGAAAAACATGATAATATGGTTTTGATTGCTGAGACAGTCCGACAAAAGAAGCTCTTGGCGAAATATAACAGAGTGTCGCTGTTTGCCGTGGAGGAGTATGAGGCCCTGCAGGAAAACCTGGATCTGGAGAAGGAGCTGAGGGCAGAGGCAGAGATATTTGCACGAGAGATGCTGGTTGAGCAGAAGAAGCTGAACAGACAGAGTCAGATTCTCCTAAAGAGCTCATCACCCAGTGATACCCTGCAGGCAGCCCTCACTGATGTCACCAGGCTCACCCAGGCCCTGGAGAGCCAGAGGCTGGTGCACCAACAACAGATGAAGGGGATTGAGGAGCAGCTCAGGGGTTCAGAGCTACATAAGGAGGTGCTGGCGTTACAACGTAAGCTAGAGCTCCTggcagaggagaagagggagcacGAAGAGAGATATTCCACGGCTAAGGTGGAGGCCAAGGATCTCAAGTTTACTGTAGAGGAGCTGCAGAAGAAGCTCCAGGCCCTTTCTAACCCTCCGCCTGCTCCAGCCCCTGCACCTCCGCCCCCgccaccccctcctccaccaccagccCCTCTCACCAACCCTCTCGGTTCACTGCTATTGATGATTCGCAAAAAGAAAAATATCAGTAGGGATATTCCATTAGTGGTTCAAGACTCAGCAAAGGAGCCAGAGATGGACATCAGGCAACAAGCTGTGGATGAGATGATGCAGAGAATCAAAAGGGGGGTTCACCTCCGACCCGTGGGCCAGGCCCCCAACAAAACCAAGCCCGTCCAGCGAGAAAGGGTACCCTCTAATTCTGCCATTCAGGAACTTAAAGGAATTCTGGACACTTTCAAAAGGCCCTCCCCCCACCTTAAAGTTGGATCTCCATCAACAAACACTGAGTCTGAGCTGGAGAGAGTTCTACAGAGACGACGGGGCGCATTCAGGACCTCACAGGAAAGTTgTTCACCGTCCTCACCTCGTCCCTTCCCCAGCAGTGTTCTGGATGTCACCAGAGTGAGAGGGGACCAGCCCCAGACCAAGCAGACCTCCCAGGACTCTGTCCCGCTCTAGGCCCACTCAGCTGACCTGAGTTCTGGCCACTAGCACCCTAGATCCCTGGACAAGAGACCTGCACCTGTCAATGCTGCAGTCAGCTCTCTGGTGAAGGAAAGAAGACCTCAGAGTACAAAGCATGTCTGGTGTCCCCACTGCACTACACAGGGTTGTGGAGTAAACTACATTTGGTCCAACTAGTAATTGAATTACATTTtgcagtaggttggtggtagttgaactaaattcaaatctaAGTAGGGTTTTCAGTAGGTAATAATTTTTTTGCCATGTAGCTAACTCCTGGAACTACACACCACTTTTTTTTCACAAAATGAAAAGATAATATGGGTTTTTTTCggcatcagacctgcctaattctcacttgaaacagtTGTGTTTAACAGGCTAAATGACACATTCAGATACATATGATAATTTTTCAcgaagtagtttggatgtagtgaactactttttcaaagtaacttcagttaattaaactatatttttcttaaggCTAGCTTTAGTTTAGCTTAAATTCtttcagtgtgaagtaattggtaaacTATCTTTTCAGATTAGCTACCCCAACACTGGCATTATACCAAAAATGGAAATGTCATAAACCACATAAAAATAATGGTTATTAAATGGACAGGTTTATTCAAAATAATATTGACCACTGTGTCTTACATAAtctttttgtatgtgtgtgtattttttattCTTTGGAATTTGCAAATATATGTGTAACTATAATTAGTTTATTTCCAGAGTATGTGATGCCAAATTGTGATTCCTTTATGTGGTCATTTTGATCAATTCAGTTTTGTTTCCAAGGAAAAATACAGATCAACGCTGCATTTGGTTAGCGTGAAACCTTTTTGCACTAAGTGACGACTGAAAATTCATTCATATTAATATGGGAAGAAATGTAATGGTGTATCATTTAAATAGATTGTATGAGCTATTCATTTTAAGACTAGTAATTACATTAGATTGACGTAAACATAAATAGAAAATGTCATTTTGGAATAAAAACACTATGGTATTCATTTAA
>XM_021609902.2
GTCAACACAAACCCTTGATCAAGGGAAAAAACAAGCATTCGAAGCCTAGTTCAGATTTAACAATGGCCAAAGGTGAGATTTGTGCACAGGTGTGTCGCGGTATCAAGGTATTTCCTGTTGCACGTAATGTGTAACCACCTCGATGTGTACTGTAAATGTACTTTCTCACAATGGCGGCCCAAGAGGAACTATTTCAAATGAAAATCATTACAGAGCTGTCCAATCAAGCTGTCCATGAGTATGAGGGTCTTCAGAGGGAGCACGAGAGAGCCACCATGGAGTGTCAAcggatggaggcagagagagacgagGCAATCAAAAGGCTTGAAGAGTTTCAAAAAGtTGAACCGGCAGAACTGCTCCTTGAAGAGGAAGAGTATGTTGTACCTGGCCCACCTGGGGCCGGAGACCATTGCTGAGATCGGCCTggaggatgaagaagaggaagaggagagtgtgGACACCCAGGTAGAAAAAGAGTGCTTCTCAGCCCACTGCCAGAGCACCATCACAGAACTGAAGAAAAAAATTGAGTTGACACTGGAGGAGAAAAAGCAAGCCACCATTGATCATGAGGCTACAAGAGAGGAGCTAAGTGACATCAGAGAAGAATTGCTGAAGGAAAAACATGATAATATGGTTTTGATTGCTGAGACAGTCCGACAAAAGAAGCTCTTGGCGAAATATAACAGAGTGTCGCTGTTTGCCGTGGAGGAGTATGAGGCCCTGCAGGAAAACCTGGATCTGGAGAAGGAGCTGAGGGCAGAGGCAGAGATATTTGCACGAGAGATGCTGGTTGAGCAGAAGAAGCTGAACAGACAGAGTCAGATTCTCCTAAAGAGCTCATCACCCAGTGATACCCTGCAGGCAGCCCTCACTGATGTCACCAGGCTCACCCAGGCCCTGGAGAGCCAGAGGCTGGTGCACCAACAACAGATGAAGGGGATTGAGGAGCAGCTCAGGGGTTCAGAGCTACATAAGGAGGTGCTGGCGTTACAACGTAAGCTAGAGCTCCTggcagaggagaagagggagcacGAAGAGAGATATTCCACGGCTAAGGTGGAGGCCAAGGATCTCAAGTTTACTGTAGAGGAGCTGCAGAAGAAGCTCCAGGCCCTTTCTAACCCTCCGCCTGCTCCAGCCCCTGCACCTCCGCCCCCgccaccccctcctccaccaccagccCCTCTCACCAACCCTCTCGGTTCACTGCTATTGATGATTCGCAAAAAGAAAAATATCAGTAGGGATATTCCATTAGTGGTTCAAGACTCAGCAAAGGAGCCAGAGATGGACATCAGGCAACAAGCTGTGGATGAGATGATGCAGAGAATCAAAAGGGGGGTTCACCTCCGACCCGTGGGCCAGGCCCCCAACAAAACCAAGCCCGTCCAGCGAGAAAGGGTACCCTCTAATTCTGCCATTCAGGAACTTAAAGGAATTCTGGACACTTTCAAAAGGCCCTCCCCCCACCTTAAAGTTGGATCTCCATCAACAAACACTGAGTCTGAGCTGGAGAGAGTTCTACAGAGACGACGGGGCGCATTCAGGACCTCACAGGAAAGTTgTTCACCGTCCTCACCTCGTCCCTTCCCCAGCAGTGTTCTGGATGTCACCAGAGTGAGAGGGGACCAGCCCCAGACCAAGCAGACCTCCCAGGACTCTGTCCCGCTCTAGGCCCACTCAGCTGACCTGAGTTCTGGCCACTAGCACCCTAGATCCCTGGACAAGAGACCTGCACCTGTCAATGCTGCAGTCAGCTCTCTGGTGAAGGAAAGAAGACCTCAGAGTACAAAGCATGTCTGGTGTCCCCACTGCACTACACAGGGTTGTGGAGTAAACTACATTTGGTCCAACTAGTAATTGAATTACATTTtgcagtaggttggtggtagttgaactaaattcaaatctaAGTAGGGTTTTCAGTAGGTAATAATTTTTTTGCCATGTAGCTAACTCCTGGAACTACACACCACTTTTTTTTCACAAAATGAAAAGATAATATGGGTTTTTTTCggcatcagacctgcctaattctcacttgaaacagtTGTGTTTAACAGGCTAAATGACACATTCAGATACATATGATAATTTTTCAcgaagtagtttggatgtagtgaactactttttcaaagtaacttcagttaattaaactatatttttcttaaggCTAGCTTTAGTTTAGCTTAAATTCtttcagtgtgaagtaattggtaaacTATCTTTTCAGATTAGCTACCCCAACACTGGCATTATACCAAAAATGGAAATGTCATAAACCACATAAAAATAATGGTTATTAAATGGACAGGTTTATTCAAAATAATATTGACCACTGTGTCTTACATAAtctttttgtatgtgtgtgtattttttattCTTTGGAATTTGCAAATATATGTGTAACTATAATTAGTTTATTTCCAGAGTATGTGATGCCAAATTGTGATTCCTTTATGTGGTCATTTTGATCAATTCAGTTTTGTTTCCAAGGAAAAATACAGATCAACGCTGCATTTGGTTAGCGTGAAACCTTTTTGCACTAAGTGACGACTGAAAATTCATTCATATTAATATGGGAAGAAATGTAATGGTGTATCATTTAAATAGATTGTATGAGCTATTCATTTTAAGACTAGTAATTACATTAGATTGACGTAAACATAAATAGAAAATGTCATTTTGGAATAAAAACACTATGGTATTCATTTAA
>TU85226
ATTTCCTGTTGCACGTAATGTGTAACCACCTCGATGTGTACTGTAAATGTACTTTCTCACAATGGCGGCCCAAGAGGAACTATTTCAAATGAAAATCATTACAGAGCTGTCCAATCAAGCTGTCCATGAGTATGAGGGTCTTCAGAGGGAGCACGAGAGAGCCACCATGGAGTGTCAAcggatggaggcagagagagacgagGCAATCAAAAGGCTTGAAGAGTTTCAAAAAGTGTCCCACATGGTCATTGAAGAGGTCAACT

Function

symbol description
shtn1 Predicted to enable actin filament binding activity. Acts upstream of or within posterior lateral line neuromast primordium migration. Predicted to be located in several cellular components, including axonal growth cone; lamellipodium; and perikaryon. Predicted to be part of microtubule associated complex. Is expressed in neuromast and posterior lateral line primordium. Orthologous to human SHTN1 (shootin 1).

NR:

description
shootin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609911.2 False 2434 mRNA 0.45 14 69046945 69070919
XM_021609890.2 False 2812 mRNA 0.45 17 69046945 69095229
XM_021609902.2 False 2722 mRNA 0.45 16 69046945 69095234
TU85226 True 263 lncRNA 0.46 4 69082178 69095125

Neighbor

gene id symbol gene type direction distance location
LOC110528078 LOC106606490 coding downstream 57538 68941572 ~ 68989407 (-)
LOC110528072 NA coding downstream 123639 68909178 ~ 68923306 (-)
LOC110528038 LOC106576680 coding downstream 198276 68769225 ~ 68848669 (-)
LOC118964446 NA coding downstream 304874 68705693 ~ 68742071 (-)
LOC110527951 coda1 coding downstream 356602 68575379 ~ 68690343 (-)
atp6v1ba LOC100136607 coding upstream 1647 69096881 ~ 69141094 (-)
vax1 LOC106576936 coding upstream 74286 69169520 ~ 69179563 (-)
LOC110528163 LOC106576940 coding upstream 193219 69288453 ~ 69363097 (-)
si:ch211-125o16.4 LOC106576941 coding upstream 291002 69386236 ~ 69400573 (-)
LOC118965314 NA coding upstream 325833 69421067 ~ 69432188 (-)
G76500 NA non-coding downstream 107190 68939536 ~ 68939755 (-)
G76499 NA non-coding downstream 108863 68931237 ~ 68938082 (-)
G76492 NA non-coding downstream 146067 68900628 ~ 68900878 (-)
G76491 NA non-coding downstream 147029 68899654 ~ 68899916 (-)
G77235 NA non-coding upstream 208518 69303752 ~ 69304024 (-)
G77276 LOC106581475 non-coding upstream 268997 69364231 ~ 69364549 (-)
G77277 NA non-coding upstream 270377 69365611 ~ 69366130 (-)
G77279 NA non-coding upstream 274038 69369272 ~ 69369557 (-)
G77284 NA non-coding upstream 277341 69372575 ~ 69372793 (-)
G75682 NA other downstream 835239 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 884943 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 1365215 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1658901 67386509 ~ 67389299 (-)
LOC118965321 LOC106576963 other upstream 987606 70082835 ~ 70088715 (-)
G78414 NA other upstream 1259682 70354916 ~ 70355591 (-)
G79616 NA other upstream 2226716 71321950 ~ 71386523 (-)
G79700 NA other upstream 2374448 71469435 ~ 71470755 (-)
G79904 NA other upstream 2647811 71743045 ~ 71743809 (-)

Expression


Co-expression Network