atp6v1ba (LOC100136607)


Basic Information

Item Value
gene id atp6v1ba
gene name LOC100136607
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69096881 ~ 69141094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609923.2
gtttgtagtaactagtggaaacccaaACATCCGGATTCCAAAGTCATATGACTAGCCGCCAGCGCAGTGTCATTTAATAGCCTCACagctagcagcacactgtaacgtAGCAGGTAACCAGTGAGTTTCGTTAATTTAACCATGGCAACATTGGTGGGAAACAGGACAATGGACATCAACGGACCTGCTGCGGCAAGGACGCACACACAGGCTGTGACCAGAAACTACATCTCACAACCAAGGCTGACTTATTCTACTGTGTCTGGAGTGAATGGGCCCCTGGTGATTCTGGATAATGTGAAGTTTCCCAGGTATGCTGAGATTGTACATCTGACTTTACCTGATGGCACCAGGAGGAGTGGCCAGGTGCTGGAGGTGATTGGCACCAAGGCTGTCGTACAGGTGTTTGAGGGGACATCTGGTATTGATGCCAAGAAGACGGCCTGTGAGTTCACCGGTGACATCCTGCGCACACCTGTGTCTGAGGACATGCTGGGACGTGTTTTCAATGGCTCAGGCAAGCCCATTGACCGTGGCCCCACTGTGCTGGCTGAAGACTACCTGGATATCATGGGCCAACCCATCAACCCTCAGTGCCGTATCTACCCTGAGGAGATGATCCAGACTGGTATTTCTGCCATCGATGGGATGAACAGCATTGCTCGAGGTCAGAAGATCCCCATCTTTTCTGCCGCTGGCCTCCCCCACAACGAGATTGCTGCCCAGATTTGTCGTCAGGCTGGCCTGGTGAAGAAATCCAAGGATGTGATGGACTACAGCGATGATAACTTTGCCATTGTCTTTGCTGCCATGGGGGTGAACATGGAAACTGCTCGCTTCTTCAAGTCGGACTTTGAGGAGAATGGATCCATGGACAATGTTTGCCTGTTCTTGAACCTAGCCAACGACCCCACTATTGAGCGCATCATCACCCCTCGCCTGGCTCTGACCTCAGCTGAGTACCTGGCCTACCAGTGTGAGAAGCATGTCCTGGTCATCCTGACTGACATGAGCTCCTACGCCGAAGCTCTGAGAGAGGTGTCAGCTGCCAGAGAGGAAGTCCCTGGCCGTCGTGGTTTTCCCGGTTACATGTACACGGATCTGGCTACCATCTACGAGCGTGCCGGCAGAGTGGAGGGCAGGAACGGCTCCATCACTCAGATACCCATCCTCACCATGCCCAACGATGATATCACCCATCCCATTCCTGATCTCACTGGGTACATCACTGAGGGACAGGTCTATGTGGACCGACAGCTGCACAACAGACAGATCTACCCACCCATCAATGTGCTGCCCTCTCTGTCTCGATTGATGAAGTCCGCCATCGGTGAAGGAATGACCCGTAAAGACCATGCTGATGTCTCCAACCAGCTGTATGCCTGCTATGCCATTGGTAAGGATGTGCAGGCCATGAAGGCCGTGGTCGGAGAGGAGGCCCTCACCTCCGATGATCTGCTCTACCTGGAGTTCCTGCAGAAGTTTGAGAAGAACTTCATCGCTCAGGGCCCCTATGACAACAGGACCGTCTATGAGACCCTGGACATTGGCTGGCAGCTGCTCCGAATCTTCCCCAAAGAGATGCTGAAGAGGATTCCCCAGAGCACCCTGGCCGAGTTCTACCCGAGGGAGTCTGCCGCTCGTCACTGAGCGCCTTCAGCTGCTCCGACCCCCTTAGACAAGTGTTGACCCGACCACTCAGAGAACAGAGCAATGATCTCAGCTCCCTCTAgatgtattctactgtatctgtgtCCAGAAACTCGTATGGATAGTGTCTGTGATTGTAACTGTTCATTTTGTTCAGAGATGTGAACTTGCCCTTAAATCAAAGAATGATCCTGTTTATTTATTGGGGTATTTTACTGCTAGGTTTTGTTTATTGAATGTTGTCCCCACCTAAACTAAATTCAACCTTCCAAAAATATTAAAACATCCTATACATTAGAGCTTGACAGGAATTGTTATGTTCTCTTTTACATTTCAATGGTTTGAATTTGTCCAATATGTTTGTCACCCTGAAGATAGCACTTCATTCACTTATTTCAGATAGGGGGAAATGACTTCTTAACCATATCTGAAATTGTAGGACTTCACCAAATACCTAGGAGGTCAAAGTGTCATGACGTACTTTAATGTATTAGACCGAACATCATTGTTACTTAAATGTTTACTGTTATAGGCATGAGGTAAGGGTTTCGATATTTGACAAACTTTTGGGCCACTTGAAATTGTCTATTGTAGATATAGACCTTTGTGTGAACTGTGATTGCTCATTTCTTTTTGGCCTCTGTTGCTTGGTGTAATTACTATCGAAAGAAAATGATGTTTACATTGTTTGCTGTATGTATGTGCTGTTAAAAGAAAAATAATACTAAACATTCCCCTGTTGCATTGTTAATTCTTTGTTTGCAGAAATCGGATCTGTGTTTATTGATTCCTGTGTTttcctgtccataaataaatgtattttacaatTA

Function

NR:

description
V-type ATPase B subunit

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609923.2 True 2480 mRNA 0.47 14 69096881 69141094

Neighbor

gene id symbol gene type direction distance location
shtn1 shtn1 coding downstream 1647 69046945 ~ 69095234 (-)
LOC110528078 LOC106606490 coding downstream 107474 68941572 ~ 68989407 (-)
LOC110528072 NA coding downstream 173575 68909178 ~ 68923306 (-)
LOC110528038 LOC106576680 coding downstream 248212 68769225 ~ 68848669 (-)
LOC118964446 NA coding downstream 354810 68705693 ~ 68742071 (-)
vax1 LOC106576936 coding upstream 28426 69169520 ~ 69179563 (-)
LOC110528163 LOC106576940 coding upstream 147359 69288453 ~ 69363097 (-)
si:ch211-125o16.4 LOC106576941 coding upstream 245142 69386236 ~ 69400573 (-)
LOC118965314 NA coding upstream 279973 69421067 ~ 69432188 (-)
exo1 exo1 coding upstream 296228 69437322 ~ 69445733 (-)
G76500 NA non-coding downstream 157126 68939536 ~ 68939755 (-)
G76499 NA non-coding downstream 158799 68931237 ~ 68938082 (-)
G76492 NA non-coding downstream 196003 68900628 ~ 68900878 (-)
G77235 NA non-coding upstream 162658 69303752 ~ 69304024 (-)
G77276 LOC106581475 non-coding upstream 223137 69364231 ~ 69364549 (-)
G77277 NA non-coding upstream 224517 69365611 ~ 69366130 (-)
G77279 NA non-coding upstream 228178 69369272 ~ 69369557 (-)
G77284 NA non-coding upstream 231481 69372575 ~ 69372793 (-)
LOC110527951 coda1 other downstream 406652 68575379 ~ 68690343 (-)
G75682 NA other downstream 885175 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 934879 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 1415151 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1708837 67386509 ~ 67389299 (-)
LOC118965321 LOC106576963 other upstream 941746 70082835 ~ 70088715 (-)
G78414 NA other upstream 1213822 70354916 ~ 70355591 (-)
G79616 NA other upstream 2180856 71321950 ~ 71386523 (-)
G79700 NA other upstream 2328588 71469435 ~ 71470755 (-)
G79904 NA other upstream 2601951 71743045 ~ 71743809 (-)

Expression


Co-expression Network