LOC110528163 (LOC106576940)


Basic Information

Item Value
gene id LOC110528163
gene name LOC106576940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69288453 ~ 69363097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609993.2
ACTTTTTTAGTGTCGCTGACGAGCCGCTGATCAGGGAAGAGGCAGATGATATGGCAGCTTTGTGAGCGACCAGGTGGAACTTGCATTGTTAAGACGGTTAAACGTCGGAATATGAAAACATTTTAACGCGGAAACAGGGAGAGGGACACTGTTCGAAATGATTTACTTGATAGTCATTTCCGCATTATCTGGAGCACTCTTTACATTGGTATTACAGTTCTTACTGCTTTACCGGAGAAGCCCCGAGCCTATAGCCAGGACAGTGCAATATGTCAAAGCAGTGCCTGATCCCGCATTGAAGGATTACTTTAATAACCAACATGCAGAATCAGGCCAGCAGCAACAAGACAACACATCATCCGCTGCACCCAAACAGCAAGAGGCCATCACTCCCAGGCATCAGGAAGCGGCTGCCACCAGCAGTAGCCCTAAACAACAACCGCCACCGCCTTGTCAAAGTGAGCCCCTCCACACCTCCAAACCGGAGACGTGCAATTTTCTTAATGCTATCTTTTTGTTCCTATTCAGAGAACTCCGCGACACTCCCGTCGTTAGGCACTGGCTGACCAAAAAGTTCAAGGTGGAGTTCGAGGAGCTATTACAAACCAAGACAGCTGGTCGGCTGTTGGAGGGACTCAGTCTCAGGGATATCTCCCTTGGTAATTCTTTGCCCGTGTTTAAAACGGCCAAACTTATGAAGCCAGTGAGTTTAAATGAAGACGGCATGCCCGAGGAACTCAATTTCGAGGTGGACCTTGAATATAATGGCGGGTTCCATCTAGCAATTGATGTAGACCTCGTTTTTGGGAAGTCAGCATACCTGTTCGTAAAAATGACGCGTGTGGTTGGAAGACTGAAGCTGCAGTTCACTCGCATGCCTTTTACGCACTGGTCCTTCGCGTTCCTTGAGGACCCACTGATAGACTTCGAGGTGAAGTCACAGTTCGAGGGAAGGCCCTTGCCCCAGCTCACCTCAATCATTGTCAACCAGCTGAAAAGAATCATCAAGAAGAAACACACCTTGCCAAATTACAAAATCAGataCAAACCCTTTTTCCCTTTCCAAGTGCAACCTCCTATTGGGTCTTCCGCCTGTGACTTGGACCTCTCCGTTCAGGACTCAGGATTGGTGGAGGGCCGGCTTAGGGTCACCCTTGTTGAATGTAGCAGGCTTTTTATCCTTGGCTCGTACGACAGAGAGACCTACGTGCACTGCACCTTTGAGCTGAGCAGCCACGAGTGGAAAGAGAAAACACGCAGCTCCATCAAAACGacggAGGTGATCAAAGGACCCTTTGGCAATGTGGGTATGACGTTCAGGCACGTCCCTGCCTGTGAGGGTGACGCAGTCCATGTCAGCATCGAGACGGTCACTCCCAACTCTCCTGCTGCCCTGGCAGACCTGCAGAGGGGCGATCGACTCATCGCCATTGGAGGTGTCAAAGTGACATCCTCTGTCCAAGTGCCCAAACTGCTGAAGCAGGCAGGGGACAGGGTGCTGGTCCTGTACGAGAGGCCTGTGCGTCACCAGAGTCCCACCGTGGGCCTGGGAGCCCTCCAGGAGGGGCTGGGCCAGCTAGAGGAGCCCAGCTTCATCCCTCCCCCGGGGGGCTACGAGGAGGACCCGGCCCCCATCACCACACTCGCCGACATAGCCGACAGCAAAGACATGGACTGTGAGTTTGAAGACTTGACTGTGGACCCCAAGCCTAACCCCCTTAGCAGTAGCGTGGAAGCCAAGGAGGATTTCCTGTCCGTAAACCAAAGCCCCAAAAGGACTGTGACCAATCTGGCCTCAAAACCCCTCGGCAGCATATCGCCCATCCTCAACCGCAAAATGAACCTGGCAGGGCTTCAGTCGCCGGCCAGATCCCCACCCACACCAAAGCCCTCGCCACACAAGAGCATTGAGCCAGGAGAGGGGCCACAGCGCCCCACCggcccccctccacccccacccacTCGCCCGCCGGTGCCTCCTAGACCCCACATTAAATTAACGTCCGCCTCTTCTGAAACCCAAAGTCTGCTGGAGGGGAGTGAAGCTACCAACGGGGCTGAGAAAACTCCAGAAAAGACTCAAACACACTCCACAGGAAGCAATGGTGACAAAGGCAGTGTTTTGACGACTCCTGTGAAACAGCCCGAACCAAAGCCAGCAGTCAAACCACCCGAACCCTGCGAAGAGCCGCCAGCGCCCCCCTCCACTCCCAGCAAGCAGGACCTGGCCAAAGACAAGGTTTCTGAGAGCTCCATCAACACCCGAGACAGCATGGAGGATCACTCAATGTGGGAGTCTTCAGAGATCATGTTCCGCAACCGGACGGCCCACTGGGGCCATGCCTCTGTGGTGTTAGAGGTGGAAAGCAACCATAAGTACCTTAACGTGGCACTGTGGTGCAAAGACCCCTTCAAGCTGGGCAGCCTTCTGTGTCTGGGCCACGTCAGCCTGACACTGGAGCACGTGGCCCTGGAGTGTCTGTCCACGTCCTCATCTGAGTACCAGAACACCTTCAGGCTGGAAGCCCCAGAGCCCAGGGCCAGCGTCAGCCGCACCGCCCTGCGCAGCCTCAGCACCCACAAGGGCTTCAACGAGAAGCTGTGCTACGGAGACATCATCCTCAACTTCAGCTACCTGGCTGATGGAGAGTCAGAGACGTGCGGCGGGCTGGCGGAGCGGGAGAAGAAGGCCAGCATGCCGGACGAGGagctgagggagagggagagggagcagccTTCCTCTATTCCCAGTGATGACCTGGCCTACAGCACCATGCAGCTGGTGGAGGTGCGCCACAACTTCCAGGACACCCAGTTCCAGAACCCCACCTGGTGCGAGTACTGCaagaagaaggtgtggaccaaggCTGCCTCCCAGTGCATGATCTGTTCCTACGTCTGCCACAAGAAGTGCCAGGAGAAGTGCCTGGCCGAGCACCCTCTCTGCGTGGCCGCCACAGACCGACGCAGTGCCGACCCGGAGGCTAAGTCCACCATCAACCGTGCCACCACAGGCCTCAGCCGCCACATCATCAACACCGGCTCCCGTCTGCTCAACCTGCGCCAGGTGCCCAAGAGCCGGCTGGCAGAGCAAGCGGCTGACGTTGTGCCCGACGTGGTGCACACCCCCGACATCTCAGACAACGAGAGCAGCGATACAGAAACCTATGCCGGGGCCAGCCCCTCCAAGCATGCAGCCGGCGTCACCACCAAGctggtaaggagggagggaggacttgATGACAGTGTATTCATCGCGGTGAAGGAGATCGGCCGGGACCTGTACCGGGGCCTTCCCACCGACGAGCGCTCGCAGAAACTGGAGCTGATGCTGGACAAGCTGCAGCAGGAGATCGACCAGGAGCTGGAGCACAACAACGCCCTGatgcaggaggagagggagactggggacGCCCGGAGGAAGGCTCTGATCACGGCCGCCCTGGCCAAGTCTGGGGAGAGGCTCCAGGCTCTCACCCTGCTCATGATCCACTACCGGGCAGGCATCGAGGACCTGGAGTCTGTGGATAGTGCCGGCACCTCCCCCTCGGAGCCACATGGCCTCCAGGCCAAGGGCGGGGCCTTGGAGGAGGCAATACTGGGGACAGAGGTTTATGACAGTGACATATGCAGCCCAGTGGAGGCTCAGCTGCtggatgacatcacagaggagcAGATTTGTGTGGAGGCGCTCCACTAGAGAGGATGAGGCATGGGCTTGAGACTTACAACAAAATCATTGGAATCTTTTTCTTTGGGGGTGGTGGGGTTTAGGTTACCATCTGAAGATTATCTGAAGTGGTCTGGTGAGGGTGCAATTGTTGTTTTGTAAACCAATCGGTCATGCGATtcattcttgtttttttttctagTTTTCTTAGTCATACTTTTAAAGGGAAGCTGGAAAGCTAGATTGTGACCTGCTTCAATTGGCATTAAGAACAGTCTCCCAAGTCAATCTGTAAGTGCTTGGATTCAATAAAAGTtgaaaacatactgtacattaataTTCCATTCTATTTTAGCTTTTATTGACGTTAATTCATTTGTTTTCCTTACAAGGCACCttgaaacaaaacatattttcctaTTGCTTAAATGTTTGTATTCAATGTTTTAAATGGAACTGTTCGATATTTTATCACTTCAAGTTACAGCAACCGCTTTTCAAATTTGGCATAAGATTACAATCAAAATGCGATCACCATAGCAGGAGCTATGCAAATTGCAAATGGTTCTGTTTTTATCTAAATTGTCTTTGGGCAAGGAAATAAATATTAGtgtaaaatatatactgtataatatatactgtataatatatactgtataatatatactgtataatatatatatatatatatatatatatatatatatatatatactcaaccatatggaaatgtgttttgtttCAGGTTATGTACTTTTCATGTCAGTCATATCTTCTGTTTGAGTACTTTTAAATAATGCATAATCAAGTTTTTGAGGTCACCCATGACTTTTCTCTTCTTTGTTTTAGTTTTTGGAGGTTCTGGAACTACAAGCTCATGTGATAATTCAATGAAATGGGCAATAATTTGGGGAAGATAGTGGTCTATCCCTGTCATCCTCGGTTTAGTGTTTGTCACCGAGGCCAAACATGTTTGACTATGTATATGACCCAATGTTTAACCAGCATATTAACTGTACATGTTAATTCTTTCTGTTACTTTTTTTCTGGGGGAAGGGATATAGGGATGTAATAGTTGTTTCTAATTAAGTTATTTGATTAAACACCTgttgtcttccccccccccccccatccaaatGGTTTATTTGTATGGATATAATAACCCTGAACTAAAACTCAACTcaaatatggtggtggtggtggttttatCCGATCATGTTACTTGAGAATAAATGCTTGCTGTTCAAATTCTTATTGATAGATGCaaagtatttatgtatttatggCAGAAAATTCATTTATTTGGTTAATTTTGTGATGAGTGTTGTTGTGTAAGATACAGGAACACGtggatttctttttgttttattgTATGTATATCGGTCTTTATTTATGTGGTTTGGTGACGGGTGTTGGGTCTGATTTTGATGAATACTCAGAGCAGTTAGGCTGTGATTGTGTAAAGTTCTTGGCCTTTGAAAGTTGTTCTCAATTATGGACGAATGTATGTCCATTTCTATGTATGTGTAAATACAGTCCAGCACAAACCCTCTACAGAAATGCAACCACTGTTCTACCCCAATACAGTGATGTCATCATGACAGGGCCACAAACAAACTCCATACAAAACTATTACAACTGTTGTAAGGCACAGAAGAAAAAGCTCTGCTTTTAGGATAAGGAAAGCGTAATTCTCTTCTCAAGGGACCCAAAGCCTCTGGATAGGATCACTAACTACGGGTGTGCCCGAATACCCATAGCTATACTCCTAAATAGTAGGCTGTTTGAATATgtgaaaaaaaacaatgttttataGTATGTGAAATGTTGAAAATCTAGTATACTTTAAATGCCcggatgtcatactcatttcaGCTTTTTTATCTAGTAGAATACGCTGCACACTATTGAGGAAGATAATTGTCTTTTCACACCCACGTTTGTTGGAGAACAACTGATAATCAGAATAAGGAGCACGCTCTACAAAAAATATTACATGGTGGGGAACAAGCGCGCATTCGATGACGCCTTCTCAGTATGGATGAGTagtatgttgatatttgttgCTGACTGCATACGTTTGTACTCAACAGTATgttctaaatagtatgtagtacgATTAGTACACCGTATGCAGTTTAAGTAGTAGGCAAGCAAGATTTCGACACAGCCTATGACTCCTATTCTATTCTCACCAGGCTCATTGAAATCACAGTGCGTTTCTGTGGCTGTGCTGCCATTGCTTCAGCATAGGACCAGAGATGGTGAAGTAGCTCTTTGGGTCAGACAGGAGATGGAAGAAAAAGGGTGAGGGGGAAAGAAAGCTAAACTAAATTCTGTGCAATAGACGTGATGCTCTTGTTGAAGCTGGCTTGGCTGCTACTTGTTGATCTCTCTTCAATTGTTGTATATTCAGATTGTCGTGCAATATTTTTGTAGGAAATGAAGACAAAAGTGATAATCGGGAAAGGATTCTTCAGTTTTCTATTTCTCGTTGTTTCTCTCCATAGAAAACCGTATCTGACCGTTAGGTAACTTGGGACCCCTGGGCTGGAATTGAGCTGATGAGAAgagtaaacaaaaacacattttgggCTGTCATGCTacttctgctactgctgctgttgtaACTCTGTACTCTCTAAACCCATTCATACGCTCCTGATCTGTCTCTCCCTACGATTCACAGTATACTAACATAGTGTCATGGCTTTCTGCTgcggattttttttttttgtaagaggGATGTTGTACACGGTTCTAGAGATGGATCATGTGATGAAGCGCTATTGTACATGGCCTCAATAAAAAAAGCTCACCTGAAGTCCA

Function

NR:

description
PDZ domain-containing protein 8-like

GO: NA

KEGG:

id description
K24060 PDZD8; PDZ domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609993.2 True 6499 mRNA 0.48 5 69288453 69363097

Neighbor

gene id symbol gene type direction distance location
vax1 LOC106576936 coding downstream 108890 69169520 ~ 69179563 (-)
atp6v1ba LOC100136607 coding downstream 147359 69096881 ~ 69141094 (-)
shtn1 shtn1 coding downstream 193219 69046945 ~ 69095234 (-)
LOC110528078 LOC106606490 coding downstream 299046 68941572 ~ 68989407 (-)
LOC110528072 NA coding downstream 365147 68909178 ~ 68923306 (-)
si:ch211-125o16.4 LOC106576941 coding upstream 23139 69386236 ~ 69400573 (-)
LOC118965314 NA coding upstream 57970 69421067 ~ 69432188 (-)
exo1 exo1 coding upstream 74225 69437322 ~ 69445733 (-)
LOC110528285 NA coding upstream 203085 69566181 ~ 69569154 (-)
LOC110528376 LOC106576957 coding upstream 637220 69993128 ~ 70022403 (-)
G76500 NA non-coding downstream 348698 68939536 ~ 68939755 (-)
G76499 NA non-coding downstream 350371 68931237 ~ 68938082 (-)
G76492 NA non-coding downstream 387575 68900628 ~ 68900878 (-)
G77276 LOC106581475 non-coding upstream 1134 69364231 ~ 69364549 (-)
G77277 NA non-coding upstream 2514 69365611 ~ 69366130 (-)
G77279 NA non-coding upstream 6175 69369272 ~ 69369557 (-)
G77284 NA non-coding upstream 9478 69372575 ~ 69372793 (-)
G77365 NA non-coding upstream 147166 69510263 ~ 69539584 (-)
LOC110527951 coda1 other downstream 598224 68575379 ~ 68690343 (-)
G75682 NA other downstream 1076747 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1126451 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 1606723 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 1900409 67386509 ~ 67389299 (-)
LOC118965321 LOC106576963 other upstream 719743 70082835 ~ 70088715 (-)
G78414 NA other upstream 991819 70354916 ~ 70355591 (-)
G79616 NA other upstream 1958853 71321950 ~ 71386523 (-)
G79700 NA other upstream 2106585 71469435 ~ 71470755 (-)
G79904 NA other upstream 2379948 71743045 ~ 71743809 (-)

Expression


Co-expression Network