exo1 (exo1)


Basic Information

Item Value
gene id exo1
gene name exo1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69437322 ~ 69445733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610053.2
ACTCCTGTTAGATAATAAGTCACTGGTGAGTGGCGTAGGTTTTTGAAGATCCACGAACGTTCGAATGAATTAACGTTATTTACGGTCGGTTTCTAAGCCAGTGGAACTATCTCGCTGGAATTCGTAATCTACCCTGCATGTCCAGCAAGCAACTGTCCTGAATGTTAGTGGCATCACCAGATTAAAAAATGGGGATCCAGGGGCTGTTGCAGTTCCTCAAAGATGCCTCGGAGCCCATCAGTGTGAGGAAGTACAAGGGACAGACAGTGGCCGTAGACACATATTGCTGGCTTCATAAAGGGGCATTTTCTTGTGCAGAGAAACTTGCCAAAGGGGAGCCAACTGACCAGTATGTTACATACTGCATGAAATTTGTGGACATGCTGTTGTCTTTTGGTGTGAAGCCCATCTTGGTGTTTGATGGCTGCAATCTGCCTTCAAAACAGGAGGTGGACAAAGCTCGCGGAGAGCGTCGTCAGGCAAATCTGCAGAAAGGTAAGCAGCTCCTACGTGAGGGAAAGATTTCAGAGGCCAGAGACTGCTTTACTCGCTGTGTTAACGTCACCCCTTCCATGGCCCATGATGTCATCAAGGCTGCAAGGACCAGAGGAGTGGACTGTGTGGTGGCCCCGTATGAAGCTGATGCCCAGCTGGCCTTCCTTAACAAGGCTGGCATTGCACAGGCTATCATCACTGAAGACTCAGACTTATTGGCGTTTGGCTGCAAAAAAGTGATCCTAAAGATGGACAAACAGGGGAACGGTCTAGAGATTGACCAGAACCACCTGGGGCGGTGCCGCTCTCTGGGTGACGTCTTCACGGAAGAGAAGTTCCGCCACATGTGTATTCTCTCTGGCTGTGACTATCTGTCCTCACTCTATGGGATTGGCTTGGGCAAAGCCTGTAAACTGCTGAGGATGGCAAACAACCCAGACATCATTAAGGTGATAAGGAAGATGGGCCAGTACCTGAAGATGAATGTGGTTGTGCCAGACGAGTACATTGACGGCTTTGTTAAGGCCAATAACACCTTCCTCTACCAGCTGGTGTTTGACCCCATCAAGAGAAAGGTGGTGCCTCTCAACCCCTATCCAGAGCACATGGACCCTGCCACCCTCAGCTACGCTGGCCGTAATTTAGGAGATTGCAAAGGTTTACAGGTGGCCCTGGGTAACCTGGATATAAACACCATGGAGAGGATTGATGACTTCAACCCAGATGCTACAAATGTCAAGCCAGTGAAACCACGCAGTCGTGACTGGAATGACAGCCAGGAGACTCGGGCCTCCACACACCCTAGCATCTGGAGCAGAGGTTACATACCAGGCACCTTCTCTGCCTCCCAGCCTGTGGGCTCTCCACAGAGGCCTCCTTCAaccagggggaaggagaggctcATCAGTATGCAGGGGCTGAGGCTTCCTCACAAGAACACACAGGTTATTAAGAGACCCAGAGAAGACTCTGGTGTTTCAGACCAGGATGTGCTGCAGCAGTACTCTCCCTCCGGTCAGAAGCGGTCCAGAGGGGAGGAGGACCCTGGACCCACAGAGAGCCATCACATCTCCACATGCCCCCAGCCCAGTGCCACTGCTGCCGCTACCCATCCCAGACCACGCAACCGCTTCGCCACCCTGCTACAGAGGAGAAACCAGGAAGGAGGTGGAGATGGGCAGGAAATGCAAAGCAGGTTCTTCTGTAGTGGCAGCAGCTCCAGTGAGGTGGCCAGCCAGAATCCGGAGTCTTTTGTCAAAGGGGAGGTGTCTCAGGATGAGGTCACACAGGACCCCAGGGAGGACTATTGTATCGGGGGAAATGCTGATACAGAGGAAAATAACTCTGTTGACCCTCATAgcccacccccctcccctctgtctGCCAGTCAAGGGTTAGGGGTGTTCCGCTGGTCAGGCAGCTCCTCAGAGAGATCCAGGACCCCGACACCCACATCCGGCCTCTCGGCACTGCAGCAGTTCCAACGCAAGAAGGAAAGCTTCTCCTGGAGCCAGGAAGGCCAGAGAACTCAGATGACCCCCGGAGCCCCATCCCCTATTCTGGGCAAAGAAGACAAGGATTCACCACCAAACTCTCCACCGTCTCAGGACAGTGCCTACTTCTCTCAGCATTACCACACTTCCTGCAATGTTGTGGAAGTGTCCCCACCCACTCGGCTGGAGGATGCCACCAGGCCTAAAATTTACTCTAAGGATTCAGACTCTGTCAAAAGCCCCAGTTCCTCTCCAACAGCAGATGAAAAGAAATCCAGCACAATGAGACCGAAGGTGGCAGGTCTCCCGCGGATGAAACCCGGTGACCAAGGAAAAGGGAAGAAGATCCGACCCTCTGCCCCTGCCAGGGCCAGTGGCCTCCGTAAAAAGCCTGCAGGCCCTGGAAAGAAAGTCACCACCAACAATGAGAACAACCCTGGCCTCCAGGCCACAATCAGTGGACTCTGGAAAAACTTTGGTTTTAAGAAAGAAAATCCAAAGATAAACCCCTGTAAGAAAGGAGAGCCCATGTCACCAGTGAAGGACAACGTGCTAGCCCTCACACCTGAAACGGACAAGGATATTTACTTAATCTCCAGTGTTCAGAAAACCATATGCCTCTGATGCCGAGTTTTATAAGCCTTCGCTTTACAACATACTGTGTATGTTAATACGTAGTGCATTTTTATGGACTAGATGTAATTGATTTCAGTTTAAATAAATGCAACTTTCTTAAA
>XM_036983973.1
ACTCTTACTATTGCCGCTAAAAGCGAACTCCTGTTAGATAATAAGGTGCCTCGTTACGGTTCAGTGCTTACTATTTGTCATGGTTAGCGCTTTCAATTCGCGGCCAGTGGAACTATCTCGCTGGAATTCGTAATCTACCCTGCATGTCCAGCAAGCAACTGTCCTGAATGTTAGTGGCATCACCAGATTAAAAAATGGGGATCCAGGGGCTGTTGCAGTTCCTCAAAGATGCCTCGGAGCCCATCAGTGTGAGGAAGTACAAGGGACAGACAGTGGCCGTAGACACATATTGCTGGCTTCATAAAGGGGCATTTTCTTGTGCAGAGAAACTTGCCAAAGGGGAGCCAACTGACCAGTATGTTACATACTGCATGAAATTTGTGGACATGCTGTTGTCTTTTGGTGTGAAGCCCATCTTGGTGTTTGATGGCTGCAATCTGCCTTCAAAACAGGAGGTGGACAAAGCTCGCGGAGAGCGTCGTCAGGCAAATCTGCAGAAAGGTAAGCAGCTCCTACGTGAGGGAAAGATTTCAGAGGCCAGAGACTGCTTTACTCGCTGTGTTAACGTCACCCCTTCCATGGCCCATGATGTCATCAAGGCTGCAAGGACCAGAGGAGTGGACTGTGTGGTGGCCCCGTATGAAGCTGATGCCCAGCTGGCCTTCCTTAACAAGGCTGGCATTGCACAGGCTATCATCACTGAAGACTCAGACTTATTGGCGTTTGGCTGCAAAAAAGTGATCCTAAAGATGGACAAACAGGGGAACGGTCTAGAGATTGACCAGAACCACCTGGGGCGGTGCCGCTCTCTGGGTGACGTCTTCACGGAAGAGAAGTTCCGCCACATGTGTATTCTCTCTGGCTGTGACTATCTGTCCTCACTCTATGGGATTGGCTTGGGCAAAGCCTGTAAACTGCTGAGGATGGCAAACAACCCAGACATCATTAAGGTGATAAGGAAGATGGGCCAGTACCTGAAGATGAATGTGGTTGTGCCAGACGAGTACATTGACGGCTTTGTTAAGGCCAATAACACCTTCCTCTACCAGCTGGTGTTTGACCCCATCAAGAGAAAGGTGGTGCCTCTCAACCCCTATCCAGAGCACATGGACCCTGCCACCCTCAGCTACGCTGGCCGTAATTTAGGAGATTGCAAAGGTTTACAGGTGGCCCTGGGTAACCTGGATATAAACACCATGGAGAGGATTGATGACTTCAACCCAGATGCTACAAATGTCAAGCCAGTGAAACCACGCAGTCGTGACTGGAATGACAGCCAGGAGACTCGGGCCTCCACACACCCTAGCATCTGGAGCAGAGGTTACATACCAGGCACCTTCTCTGCCTCCCAGCCTGTGGGCTCTCCACAGAGGCCTCCTTCAaccagggggaaggagaggctcATCAGTATGCAGGGGCTGAGGCTTCCTCACAAGAACACACAGGTTATTAAGAGACCCAGAGAAGACTCTGGTGTTTCAGACCAGGATGTGCTGCAGCAGTACTCTCCCTCCGGTCAGAAGCGGTCCAGAGGGGAGGAGGACCCTGGACCCACAGAGAGCCATCACATCTCCACATGCCCCCAGCCCAGTGCCACTGCTGCCGCTACCCATCCCAGACCACGCAACCGCTTCGCCACCCTGCTACAGAGGAGAAACCAGGAAGGAGGTGGAGATGGGCAGGAAATGCAAAGCAGGTTCTTCTGTAGTGGCAGCAGCTCCAGTGAGGTGGCCAGCCAGAATCCGGAGTCTTTTGTCAAAGGGGAGGTGTCTCAGGATGAGGTCACACAGGACCCCAGGGAGGACTATTGTATCGGGGGAAATGCTGATACAGAGGAAAATAACTCTGTTGACCCTCATAgcccacccccctcccctctgtctGCCAGTCAAGGGTTAGGGGTGTTCCGCTGGTCAGGCAGCTCCTCAGAGAGATCCAGGACCCCGACACCCACATCCGGCCTCTCGGCACTGCAGCAGTTCCAACGCAAGAAGGAAAGCTTCTCCTGGAGCCAGGAAGGCCAGAGAACTCAGATGACCCCCGGAGCCCCATCCCCTATTCTGGGCAAAGAAGACAAGGATTCACCACCAAACTCTCCACCGTCTCAGGACAGTGCCTACTTCTCTCAGCATTACCACACTTCCTGCAATGTTGTGGAAGTGTCCCCACCCACTCGGCTGGAGGATGCCACCAGGCCTAAAATTTACTCTAAGGATTCAGACTCTGTCAAAAGCCCCAGTTCCTCTCCAACAGCAGATGAAAAGAAATCCAGCACAATGAGACCGAAGGTGGCAGGTCTCCCGCGGATGAAACCCGGTGACCAAGGAAAAGGGAAGAAGATCCGACCCTCTGCCCCTGCCAGGGCCAGTGGCCTCCGTAAAAAGCCTGCAGGCCCTGGAAAGAAAGTCACCACCAACAATGAGAACAACCCTGGCCTCCAGGCCACAATCAGTGGACTCTGGAAAAACTTTGGTTTTAAGAAAGAAAATCCAAAGATAAACCCCTGTAAGAAAGGAGAGCCCATGTCACCAGTGAAGGACAACGTGCTAGCCCTCACACCTGAAACGGACAAGGATATTTACTTAATCTCCAGTGTTCAGAAAACCATATGCCTCTGATGCCGAGTTTTATAAGCCTTCGCTTTACAACATACTGTGTATGTTAATACGTAGTGCATTTTTATGGACTAGATGTAATTGATTTCAGTTTAAATAAATGCAACTTTCTTAAA
>XM_021610045.2
TCCCCCACATATGGTTGGTCAGAATAAACTGACCAATAGTATCAGCTCGTTGTGAACTCTTACTATTGCCGCTAAAAGCGAACTCCTGTTAGATAATAAGGTGCCTCGTTACGGTTCAGTGCTTACTATTTGTCATGGTTAGCGCTTTCAATTCGCGGTCACTGGTGAGTGGCGTAGGTTTTTGAAGATCCACGAACGTTCGAATGAATTAACGTTATTTACGGTCGGTTTCTAAGCCAGTGGAACTATCTCGCTGGAATTCGTAATCTACCCTGCATGTCCAGCAAGCAACTGTCCTGAATGTTAGTGGCATCACCAGATTAAAAAATGGGGATCCAGGGGCTGTTGCAGTTCCTCAAAGATGCCTCGGAGCCCATCAGTGTGAGGAAGTACAAGGGACAGACAGTGGCCGTAGACACATATTGCTGGCTTCATAAAGGGGCATTTTCTTGTGCAGAGAAACTTGCCAAAGGGGAGCCAACTGACCAGTATGTTACATACTGCATGAAATTTGTGGACATGCTGTTGTCTTTTGGTGTGAAGCCCATCTTGGTGTTTGATGGCTGCAATCTGCCTTCAAAACAGGAGGTGGACAAAGCTCGCGGAGAGCGTCGTCAGGCAAATCTGCAGAAAGGTAAGCAGCTCCTACGTGAGGGAAAGATTTCAGAGGCCAGAGACTGCTTTACTCGCTGTGTTAACGTCACCCCTTCCATGGCCCATGATGTCATCAAGGCTGCAAGGACCAGAGGAGTGGACTGTGTGGTGGCCCCGTATGAAGCTGATGCCCAGCTGGCCTTCCTTAACAAGGCTGGCATTGCACAGGCTATCATCACTGAAGACTCAGACTTATTGGCGTTTGGCTGCAAAAAAGTGATCCTAAAGATGGACAAACAGGGGAACGGTCTAGAGATTGACCAGAACCACCTGGGGCGGTGCCGCTCTCTGGGTGACGTCTTCACGGAAGAGAAGTTCCGCCACATGTGTATTCTCTCTGGCTGTGACTATCTGTCCTCACTCTATGGGATTGGCTTGGGCAAAGCCTGTAAACTGCTGAGGATGGCAAACAACCCAGACATCATTAAGGTGATAAGGAAGATGGGCCAGTACCTGAAGATGAATGTGGTTGTGCCAGACGAGTACATTGACGGCTTTGTTAAGGCCAATAACACCTTCCTCTACCAGCTGGTGTTTGACCCCATCAAGAGAAAGGTGGTGCCTCTCAACCCCTATCCAGAGCACATGGACCCTGCCACCCTCAGCTACGCTGGCCGTAATTTAGGAGATTGCAAAGGTTTACAGGTGGCCCTGGGTAACCTGGATATAAACACCATGGAGAGGATTGATGACTTCAACCCAGATGCTACAAATGTCAAGCCAGTGAAACCACGCAGTCGTGACTGGAATGACAGCCAGGAGACTCGGGCCTCCACACACCCTAGCATCTGGAGCAGAGGTTACATACCAGGCACCTTCTCTGCCTCCCAGCCTGTGGGCTCTCCACAGAGGCCTCCTTCAaccagggggaaggagaggctcATCAGTATGCAGGGGCTGAGGCTTCCTCACAAGAACACACAGGTTATTAAGAGACCCAGAGAAGACTCTGGTGTTTCAGACCAGGATGTGCTGCAGCAGTACTCTCCCTCCGGTCAGAAGCGGTCCAGAGGGGAGGAGGACCCTGGACCCACAGAGAGCCATCACATCTCCACATGCCCCCAGCCCAGTGCCACTGCTGCCGCTACCCATCCCAGACCACGCAACCGCTTCGCCACCCTGCTACAGAGGAGAAACCAGGAAGGAGGTGGAGATGGGCAGGAAATGCAAAGCAGGTTCTTCTGTAGTGGCAGCAGCTCCAGTGAGGTGGCCAGCCAGAATCCGGAGTCTTTTGTCAAAGGGGAGGTGTCTCAGGATGAGGTCACACAGGACCCCAGGGAGGACTATTGTATCGGGGGAAATGCTGATACAGAGGAAAATAACTCTGTTGACCCTCATAgcccacccccctcccctctgtctGCCAGTCAAGGGTTAGGGGTGTTCCGCTGGTCAGGCAGCTCCTCAGAGAGATCCAGGACCCCGACACCCACATCCGGCCTCTCGGCACTGCAGCAGTTCCAACGCAAGAAGGAAAGCTTCTCCTGGAGCCAGGAAGGCCAGAGAACTCAGATGACCCCCGGAGCCCCATCCCCTATTCTGGGCAAAGAAGACAAGGATTCACCACCAAACTCTCCACCGTCTCAGGACAGTGCCTACTTCTCTCAGCATTACCACACTTCCTGCAATGTTGTGGAAGTGTCCCCACCCACTCGGCTGGAGGATGCCACCAGGCCTAAAATTTACTCTAAGGATTCAGACTCTGTCAAAAGCCCCAGTTCCTCTCCAACAGCAGATGAAAAGAAATCCAGCACAATGAGACCGAAGGTGGCAGGTCTCCCGCGGATGAAACCCGGTGACCAAGGAAAAGGGAAGAAGATCCGACCCTCTGCCCCTGCCAGGGCCAGTGGCCTCCGTAAAAAGCCTGCAGGCCCTGGAAAGAAAGTCACCACCAACAATGAGAACAACCCTGGCCTCCAGGCCACAATCAGTGGACTCTGGAAAAACTTTGGTTTTAAGAAAGAAAATCCAAAGATAAACCCCTGTAAGAAAGGAGAGCCCATGTCACCAGTGAAGGACAACGTGCTAGCCCTCACACCTGAAACGGACAAGGATATTTACTTAATCTCCAGTGTTCAGAAAACCATATGCCTCTGATGCCGAGTTTTATAAGCCTTCGCTTTACAACATACTGTGTATGTTAATACGTAGTGCATTTTTATGGACTAGATGTAATTGATTTCAGTTTAAATAAATGCAACTTTCTTAAA

Function

symbol description
exo1 Predicted to enable 5'-flap endonuclease activity and single-stranded DNA 5'-3' exodeoxyribonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in proliferative region. Orthologous to human EXO1 (exonuclease 1).

NR:

description
exonuclease 1

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0006310 DNA recombination biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0048256 flap endonuclease activity molecular_function

KEGG:

id description
K10746 EXO1; exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610053.2 False 2725 mRNA 0.51 15 69437322 69445652
XM_036983973.1 False 2731 mRNA 0.52 15 69437322 69445678
XM_021610045.2 True 2864 mRNA 0.51 15 69437322 69445733

Neighbor

gene id symbol gene type direction distance location
LOC118965314 NA coding downstream 5134 69421067 ~ 69432188 (-)
si:ch211-125o16.4 LOC106576941 coding downstream 36749 69386236 ~ 69400573 (-)
LOC110528163 LOC106576940 coding downstream 74225 69288453 ~ 69363097 (-)
vax1 LOC106576936 coding downstream 257759 69169520 ~ 69179563 (-)
atp6v1ba LOC100136607 coding downstream 296228 69096881 ~ 69141094 (-)
LOC110528285 NA coding upstream 120449 69566181 ~ 69569154 (-)
LOC110528376 LOC106576957 coding upstream 554584 69993128 ~ 70022403 (-)
LOC110528384 LOC106576958 coding upstream 584312 70030045 ~ 70036532 (-)
LOC118965320 LOC106576961 coding upstream 610819 70056552 ~ 70075898 (-)
LOC118965321 LOC106576963 coding upstream 637102 70082835 ~ 70088715 (-)
G77284 NA non-coding downstream 64529 69372575 ~ 69372793 (-)
G77279 NA non-coding downstream 67765 69369272 ~ 69369557 (-)
G77277 NA non-coding downstream 71192 69365611 ~ 69366130 (-)
G77276 LOC106581475 non-coding downstream 72773 69364231 ~ 69364549 (-)
G77235 NA non-coding downstream 133298 69303752 ~ 69304024 (-)
G77365 NA non-coding upstream 64530 69510263 ~ 69539584 (-)
G77415 NA non-coding upstream 131528 69577261 ~ 69624783 (-)
G77461 NA non-coding upstream 189024 69634757 ~ 69635139 (-)
G77467 NA non-coding upstream 197486 69643219 ~ 69643434 (-)
LOC110527951 coda1 other downstream 747093 68575379 ~ 68690343 (-)
G75682 NA other downstream 1225616 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1275320 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 1755592 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 2049278 67386509 ~ 67389299 (-)
G78414 NA other upstream 909183 70354916 ~ 70355591 (-)
G79616 NA other upstream 1876217 71321950 ~ 71386523 (-)
G79700 NA other upstream 2023949 71469435 ~ 71470755 (-)
G79904 NA other upstream 2297312 71743045 ~ 71743809 (-)

Expression


Co-expression Network