fam98a (fam98a)


Basic Information

Item Value
gene id fam98a
gene name fam98a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69964060 ~ 69972074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984095.1
GCAACCCTATCACCGGTAAGAGGTTGAGTTAGGACCCAGCATGCCAACCCAGCAGAAGTGTTGTTCTTTAGTGATATTAGATTATTCTTGCGGTTTAATCAATTGAAGTTTCATCACAGAAATGGAGACAGATATTATTGACTCACTGGAAGATCTGGGGTACCAAGGCCCTCTGTTGGAGGATGGAGCACTGGAGGCTGCGGTGAGTGGGGGAGCAGCAGCACCAGAGTTCACCAAGGTGTGTGCCTGGATCGTCTCAGAGCTCAAGCTCTACTGTCACCTGGAGGAGAATGTCCATGCCACCAACTGTCCCAGTGAGGCAGAGGGGTTCCAGCTCGAGATGAGTGGTCTTCTGTCTGAGCTGGCCTGTCCTTACAATGTCCTCACCACAGGAGATGTCACGCAGAGGCTGCTCAACAAGACAAACTGCCTACTGCTCATCAcctttctGATCTCGGAGCTGGAGGCCTCCAGGATGATCCTGGTCAACAAGCCTCAGAAGGCAGCCCAGGAGGCCGGAGGCAGTGTTGTCTTTATGGAGCTGAAGGGAATCTGTGTGTCCCTGGGCATGTCCAAACCCCCAGCCAACATCACCATGTTCCAGTTCTTCAGTGGGATTGAGAAGAAGCTGAAAGAAGCTCTAGCCAAAGTGCCATCAACTCATGTTGGGGGTCCTCTGATGAAGAAGGCACTTGGACCAGTTCACTTTGAAAAAATCGAAGCAATCAACCAAGCACTTGTGAATGAGTATGAAGTCCGAAGGAAGATGTTGTTGAAACGTCTTGACGTGACAGTTCAGTCCTTTGGTTGGTCTGACAAAGCTAAGAAACATGCTGAAAAGCTGGCCAATGTATACCCGCCTTTGCGTTCTACCCTCGCCACAAAGAGCAAAGTCTCGGTGGCTCACCTCTTTGCTGCACGAGAGGACCTCTCCAAGATTATGCGCACAAGTAGTGGCAGGATAAGGGAGAAGACTGCTTGTGCCATTAACAAGGTTCTAATGGGACGTGTGCCAGACAGAGGTGGGCGACCCACTGAGATTGAGGCCCCCCCACCAGAGATGCCCACCTGGCAGAAGAGGCAAGACGGTCCACAGGGAGGTGGACACTATGGCGGTGGTGGACGAGGAGGCAGCAGGGGGGGCTACGACCAACACTCTCAGGGGGGCCGAGGGGGTTACGAGCGAGGAGGAGGGGGTTATGAAAGGGgcgggaggggtggaggagggggtggcAGAGGGGGCAAGGTGCAGGGAGGCTGGTcggacggaggaggaggaggaggaggaggtggtggtggtggtggtggtggtggttaccaGGGTCATAACCAGGAAGGAAGTGGCCAccaagggggtggggggagaggaggTTACGGGGGTGGAAAATTTCAAGGGGGCTTCCAGGGCCCTGGTTACCCTGCAGGAGGGCATCAAGGCGGAGGAGGTGGTTACCAACATGACAACCACAATCAAGAAGGAGGTCGCCACCAGGACAGGGGTGGCAGAGGGGGTCGCGGGGGTAGGGGAAGAGGTGATAGTAGGGGAAGAGGTGATGGTAGGGGAAGAGGACAGGGGGGAGGTTGGCGAGGGGGTCAGAATTTGAACCAAGGAGGACAGTTTGAACAGTTCTTCCAGCAGGGTGGCCAGCAGTACAATCAAGCAGGCTTTAGCCAGGGGAGCAAAAACTACACTAGTTGAAAAGAAAGTGCAGGCCACTGAAGCAGAGATCATGCAAGAGCCATGAAGTGAAAACGCCTTATTTTCTAAATGTGAATATTAATATAAAGCATGGTTATTATAATTTCTTCCCTAAACCGAATAAGAATGTGGAGAGTGACCATGTCTCCAACAGAAGAGAAAAAGTCCAAGTCATGCATGACATGAGAGCTCAAACAAACCAGACTTTTCCACAATTCCATGGCTGTTAACAAATGACTGTTCCCATGTGTTCTTTTGCATATGTGAGTGCTTTTGTGTTTATGCTGTGTTCCACTATCTTGCCACATGAAAGTTGAAGCCAATGTTTGCCATTGTAACACCTAAATTATAAAGCCTTATTTTGAAGATTATTTGAAAAAGGAGTTGAATGTCATGTAACTACATATGATACGGTGACAATTGTGGAAGTATTGTAGTCCATCCTTAGTTAATTTAATTAATACTTGAAAAGAAACAAGCTTTATTTCTCCAGTGGTTTTTTTTGTAAGCTTTGGTTTACATTATTGTTACTAGGAATGGGTTAAAAATAAGCTTGAGCCTCAAAAATGTTTTGCTGTTGCAAATAGTTTTGACTGGTATCTCCTCTATTACTTATTTAAAATATGCCACCTAATGATGCTTATAAACAAAATTGTGTACATACTTGGATGTAAGAAAGACTACTTGGAAGTGTGAATGAATGAGAGGTGAGCAATAAAATCTAATTGATTTAA

Function

symbol description
fam98a Predicted to be part of tRNA-splicing ligase complex. Orthologous to human FAM98A (family with sequence similarity 98 member A).

NR:

description
LOW QUALITY PROTEIN: protein FAM98A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984095.1 True 2433 mRNA 0.49 8 69964060 69972074

Neighbor

gene id symbol gene type direction distance location
rasgrp3 LOC106576952 coding upstream 4365 69905718 ~ 69959695 (+)
ltbp1 LOC106576950 coding upstream 61021 69771001 ~ 69903039 (+)
ttc27 ttc27 coding upstream 196101 69645409 ~ 69767959 (+)
birc6 NA coding upstream 344471 69465958 ~ 69619589 (+)
yipf4 LOC106606648 coding upstream 511403 69445879 ~ 69452657 (+)
si:ch211-195b21.5 LOC106576954 coding downstream 206 69972280 ~ 69979591 (+)
nvl LOC106576956 coding downstream 18233 69990307 ~ 69999497 (+)
zgc:153981 LOC106576960 coding downstream 79409 70051483 ~ 70052917 (+)
LOC118966712 LOC105023263 coding downstream 149938 70122012 ~ 70122911 (+)
chchd1 chch1 coding downstream 164756 70136830 ~ 70143694 (+)
G77660 NA non-coding upstream 31334 69932502 ~ 69932726 (+)
G77649 NA non-coding upstream 48108 69915723 ~ 69915952 (+)
G77640 NA non-coding upstream 55923 69907870 ~ 69908137 (+)
G76928 NA non-coding upstream 319786 69644008 ~ 69644274 (+)
G77684 NA non-coding downstream 9401 69981475 ~ 69981809 (+)
G77709 NA non-coding downstream 52017 70024091 ~ 70024385 (+)
G77875 NA non-coding downstream 66070 70038144 ~ 70038358 (+)
G77876 NA non-coding downstream 66294 70038368 ~ 70038578 (+)
G77878 NA non-coding downstream 67939 70040013 ~ 70040341 (+)
G75747 NA other upstream 1589131 68374505 ~ 68374929 (+)
G74139 NA other upstream 3179091 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 3205076 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 3539979 66417495 ~ 66424081 (+)
G73515 NA other upstream 3675591 66287679 ~ 66288469 (+)
G78121 NA other downstream 599591 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 1064396 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 3579542 73551616 ~ 73571737 (+)
G83836 NA other downstream 4937151 74909225 ~ 74909806 (+)
G83829 NA other downstream 5140586 75112660 ~ 75114190 (+)

Expression


Co-expression Network