si:ch211-195b21.5 (LOC106576954)


Basic Information

Item Value
gene id si:ch211-195b21.5
gene name LOC106576954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69972280 ~ 69979591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610367.2
CCGGATGTTGTACACTTTACAGCTTGAAGTTCTTCCGCTTTCATTCACCCGCCAGCTACTTCAAAGCAAGCGAACTAACGAGTAAATGCTTGTTTTGACATTCGGGGTTTCCCTGATAAGTCTTGATATCTAGCATTAATGTAACTGCCGTTATCATTTGACGGCTACAATGTTTCGTGGTTTTCACCATCCCGGAGAACTTCCTCGGGGCCCTGCTCCCTTAGGCTACCCACCCCATGTACAGCCACCCGGTCCCAGCTACGGAGGGCCCTTTGGCCCGCCACCCCACGTTCCAATGCCTGGACACTTACCTCCTGGATCTTGTCATCCTTTCTTACCTCCCGGATCGGGAAGTGAATACCTCCACAGGCCCATGAGGGAACATTATATCAATACTCCACACTGCAGCAGTTACTCCATTGACCGCAGCACAGTGATCAGTCTGGGTGGTCAACAGATTCTCCCACCAGACACACAGCATCTTCAGATGCCACAGTGGCCCGCCAATCCTTTGGAATCATGTCAAAGAGACAAGAGTGAGAACTTGACAGCTGGGGAAGAATTCCTCAGATGCCTTGCAGCTAATAAGCCAGTCCCTGACTTCCTCAAAGGAGTCAACCTGTTGGACGCAGGGAAGGCAGTCAAGGCTCCAGGTGTACCAGAAGACCGGGGTTATGAGAGGCAGAGACTCCGGAGCAAATCTCGCAGTCCAGCGAAGGAAAGCAGGGGCAGGAGTAAGAGCCGAGCAAAGAGCCAGGTAAGAAGCAAGAGCCGGGCAAGAAGCAAGAGCTGTCCGCGCAGCAGAAGTCGTACCCGAGGGAAAAGCCGGGCAAGAAGCAAAAGCCGACCACGAAGCAGGAGTCGCAGTCGTGGAAAGAGCCAGGTCAGAAGCAAGAGCAAGGCTCGTAGTAGGAGCCGGAGCCGAGGGAAAAGTCGGGTGAGAAGCAAAAGCAGATCAAGGAGTAGGAGTCGCAGCTATGGAAAGAGCCGGGGCAGAGTGGACCATCATTCAGACCACAGGGACAAAAGGAGCCCCATTCGGAGCTGTAGCAGCAGGATCAGTAATCACTCCTCCGTACACAATGACCTGCTCGAGGGCCTGAAACAAGTTATGAACAGCAAGCAACTGGAGGACAGTATGCCTTCCATCAAGAATGCCATTCTCACAATACAGGCCAATAACTTTAGCAGAGATATCCAGAGCAGCAGAGCAATCCAGAGCAACTGTCTTCCATGTGGACCAGTCTTGGCCAGCAGACAGGAATTTCTTCAAGCCTCAGATGGGCCCAAGCCAGTCAGCAGACAGGAGGAGACCGACAGCAATCTTCTCCCCCACGAGAGAGTGGGCTGTGACTTCTCCTGGCTGCAGGGCACCAGGGAGGTCTCGCCTGTTCAGAAGCTGGAGGAGGTTGAGGATGAGGAGAACTTCCTCTATGGGAATGAGGATAACCAGTCAAAACAACGCCCTGCCACCCTGCCTTTTGCACCGTCCACATCCATTACCCAGCAGAGCGGTGCAGAGATCTCCCCAGCAGGCCCACCCTACTATCAAAGCCAGCCTCTGTTCGGGAACCATAGTGAAGTCCTGGAGTTCAAGATGCCTCCTCAACCggtccagtccagtgtgaggCCTGAGCAGAGGGTGCAGCCTGTTCCTGATGTGAGGCCCGCCCCCACTGTGAAGGAATGTGAGGAGTTCAAGACCATGTTGAAGAACATTGGACTGAATCTGGGCACATCAGAGATCAGTAAGATGATGGTCAAGCTGCAGCAACAGAAGGAGGGGAAGGTGCCAGAGcagaagagggaggagaaagtgCCATCACCAGCACCAGTGCTGCCTCTTCCTCTTGTAATTGGGGCATCACAGGAGCCCAGACTGGCCTCGCCAGCACTCGGGGCAGCACTTGGGACAGCACCAATACGACAAGCATTGGAGTCATTACAGTTCATTATTAAAGCAACAAGGGAGAAAAGGGCCAATAGTGATCCACATGATGGCAACCATTCCCAAAGGAATTCAGACAAACAGAAGAGCAAAGATGACGAGGAGAGTCAGAGGAGATCGAGACATGACCAAATGAAAAGGAAAGAAACTCTTGTGAAGGAACTGGAGGAATTGCTAAAGCAGGATGGGTCTACCTTTTTGATTCCGGTCATCGGGTTCTACTGTCAGAGGTGTGAGGAGTTCTTCGGAGACCTGACCACTGCTGAGGACCATGCAGCAACCCACCGGCAGAATGAGCCTAGCATGCAGCATGGAGACAGACGACCTGGAGAGGACCGAAGACACCCTAGTCATTACATCGGGCACCCCCTGGGTCCAGAGTGGAGGGACCAGGGAGACCCAAGAGATCAGAGGTATCGCAAACTAGACGAGGGCCCAAAGGGTTACAGGAACGACAGGGAGAAGATCTACGTAAAAGAGGAACGCCCTGGAAGCCCCAGGATAAAGATGCAGATGGTCCGCGGGCACACCCCACCAGGTCTGCAGAaggccagggggagagaggaggggagggtggataAGGGCTCTTGTGCTGCTTCCTCTGGCCATGCCAGTGGGAAATATGGTAGGGTCAAACTTGAGGTAGTGGAGACCAAAGGAAAGCCCAACGTGGAAGTATGTGACAAAAAGGACAAAGATAAAGGAGAAAGCAGTTCTAATAGTGATGACGAGAAAGACAAATCTCCTAAAGGCAAcaaaaagaaaaagaagaaggagaaaaagaagaaggaaaagaagaagaagaagaaggaaaagGGTTAGAAGTAATAGCTGCTGTACTGCATGTCCTGGTTTGATTGTACTGTATCTCTGGAGGACCTGGCCTTGGGTCATTGTTTGGCATCATTGCAGCTGTTTTCAGAAGTTGGTGCTTTTAATGTTAAAAAGAAGCAGTACTCCTCTGATTCGTTCTCTCCTTTTGGGGTTGTCTTGTTTTTCAGCAAACTGCGTTCCTCTGTGTTGTAGTGGATAACAGCACATTGAATGCTGTTGGAGGACAGGCCGTTCCAGGGTGCATATGCAGCATTTATGATGTCCAGAATTGTTTTGCTGCCAGCTACTGATCCTATTGTTCAGACCTTTAGTTACTGTAGATGTTTATTAAATAACCCTCTTTATATTGGGCCATGTTTGTGTATATTTCACCCGGTACAACCTTGATTTAGTGCTTTGAGTGTTATCAAATGTACTTTTTGCATTTAAAGGTCAACTGCCATTTGAA
>XM_021610359.2
CGGATGTTGTACACTTTACAGCTTGAAGTTCTTCCGCTTTCATTCACCCGCCAGCTACTTCAAAGCAAGCGAACTAACGAGTAAATGCTTGTTTTGACATTCGGGGTTTCCCTGATAAGTCTTGATATCTAGCATTAATGTAACTGCCGTTATCATTTGACGGCTACAATGTTTCGTGGTTTTCACCATCCCGGAGAACTTCCTCGGGGCCCTGCTCCCTTAGGCTACCCACCCCATGTACAGCCACCCGGTCCCAGCTACGGAGGGCCCTTTGGCCCGCCACCCCACGTTCCAATGCCTGGACACTTACCTCCTGGATCTTGTCATCCTTTCTTACCTCCCGGATCGGGAAGTGAATACCTCCACAGGCCCATGAGGGAACATTATATCAATACTCCACACTGCAGCAGTTACTCCATTGACCGCAGCACAGTGATCAGTCTGGGTGGTCAACAGATTCTCCCACCAGACACACAGCATCTTCAGATGCCACAGTGGCCCGCCAATCCTTTGGAATCATGTCAAAGAGACAAGAGTGAGAACTTGACAGCTGGGGAAGAATTCCTCAGATGCCTTGCAGCTAATAAGCCAGTCCCTGACTTCCTCAAAGGAGTCAACCTGTTGGACGCAGGGAAGGCAGTCAAGGCTCCAGGTGTACCAGAAGACCGGGGTTATGAGAGGCAGAGACTCCGGAGCAAATCTCGCAGTCCAGCGAAGGAAAGCAGGGGCAGGAGTAAGAGCCGAGCAAAGAGCCAGGTAAGAAGCAAGAGCCGGGCAAGAAGCAAGAGCTGTCCGCGCAGCAGAAGTCGTACCCGAGGGAAAAGCCGGGCAAGAAGCAAAAGCCGACCACGAAGCAGGAGTCGCAGTCGTGGAAAGAGCCAGGTCAGAAGCAAGAGCAAGGCTCGTAGTAGGAGCCGGAGCCGAGGGAAAAGTCGGGTGAGAAGCAAAAGCAGATCAAGGAGTAGGAGTCGCAGCTATGGAAAGAGCCGGGGCAGAGTGGACCATCATTCAGACCACAGGGACAAAAGGAGCCCCATTCGGAGCTGTAGCAGCAGGATCAGTAATCACTCCTCCGTACACAATGACCTGCTCGAGGGCCTGAAACAAGTTATGAACAGCAAGCAACTGGAGGACAGTATGCCTTCCATCAAGAATGCCATTCTCACAATACAGGCCAATAACTTTAGCAGAGATATCCAGAGCAGCAGAGCAATCCAGAGCAACTGTCTTCCATGTGGACCAGTCTTGGCCAGCAGACAGGAATTTCTTCAAGCCTCAGATGGGCCCAAGCCAGTCAGCAGACAGGAGGAGACCGACAGCAATCTTCTCCCCCACGAGAGAGTGGGCTGTGACTTCTCCTGGCTGCAGGGCACCAGGGAGGTCTCGCCTGTTCAGAAGCTGGAGGAGGTTGAGGATGAGGAGAACTTCCTCTATGGGAATGAGGATAACCAGTCAAAACAACGCCCTGCCACCCTGCCTTTTGCACCGTCCACATCCATTACCCAGCAGAGCGGTGCAGAGATCTCCCCAGCAGGCCCACCCTACTATCAAAGCCAGCCTCTGTTCGGGAACCATAGTGAAGTCCTGGAGTTCAAGATGCCTCCTCAACCggtccagtccagtgtgaggCCTGAGCAGAGGGTGCAGCCTGTTCCTGATGTGAGGCCCGCCCCCACTGTGAAGGAATGTGAGGAGTTCAAGACCATGTTGAAGAACATTGGACTGAATCTGGGCACATCAGAGATCAGTAAGATGATGGTCAAGCTGCAGCAACAGAAGGAGGGGAAGGTGCCAGAGcagaagagggaggagaaagtgCCATCACCAGCACCAGTGCTGCCTCTTCCTCTTGTAATTGGGGCATCACAGGAGCCCAGACTGGCCTCGCCAGCACTCGGGGCAGCACTTGGGACAGCACCAATACGACAAGCATTGGAGTCATTACAGTTCATTATTAAAGCAACAAGGGAGAAAAGGGCCAATAGTGATCCACATGATGGCAACCATTCCCAAAGGAATTCAGACAAACAGAAGAGCAAAGATGACGAGGAGAGTCAGAGGAGATCGAGACATGACCAAATGAAAAGGAAAGAAACTCTTGTGAAGGAACTGGAGGAATTGCTAAAGCAGGATGGGTCTACCTTTTTGATTCCGGTCATCGGGTTCTACTGTCAGAGGTGTGAGGAGTTCTTCGGAGACCTGACCACTGCTGAGGACCATGCAGCAACCCACCGGCAGAATGAGCCTAGCATGCAGCAGCATGGAGACAGACGACCTGGAGAGGACCGAAGACACCCTAGTCATTACATCGGGCACCCCCTGGGTCCAGAGTGGAGGGACCAGGGAGACCCAAGAGATCAGAGGTATCGCAAACTAGACGAGGGCCCAAAGGGTTACAGGAACGACAGGGAGAAGATCTACGTAAAAGAGGAACGCCCTGGAAGCCCCAGGATAAAGATGCAGATGGTCCGCGGGCACACCCCACCAGGTCTGCAGAaggccagggggagagaggaggggagggtggataAGGGCTCTTGTGCTGCTTCCTCTGGCCATGCCAGTGGGAAATATGGTAGGGTCAAACTTGAGGTAGTGGAGACCAAAGGAAAGCCCAACGTGGAAGTATGTGACAAAAAGGACAAAGATAAAGGAGAAAGCAGTTCTAATAGTGATGACGAGAAAGACAAATCTCCTAAAGGCAAcaaaaagaaaaagaagaaggagaaaaagaagaaggaaaagaagaagaagaagaaggaaaagGGTTAGAAGTAATAGCTGCTGTACTGCATGTCCTGGTTTGATTGTACTGTATCTCTGGAGGACCTGGCCTTGGGTCATTGTTTGGCATCATTGCAGCTGTTTTCAGAAGTTGGTGCTTTTAATGTTAAAAAGAAGCAGTACTCCTCTGATTCGTTCTCTCCTTTTGGGGTTGTCTTGTTTTTCAGCAAACTGCGTTCCTCTGTGTTGTAGTGGATAACAGCACATTGAATGCTGTTGGAGGACAGGCCGTTCCAGGGTGCATATGCAGCATTTATGATGTCCAGAATTGTTTTGCTGCCAGCTACTGATCCTATTGTTCAGACCTTTAGTTACTGTAGATGTTTATTAAATAACCCTCTTTATATTGGGCCATGTTTGTGTATATTTCACCCGGTACAACCTTGATTTAGTGCTTTGAGTGTTATCAAATGTACTTTTTGCATTTAAAGGTCAACTGCCATTTGAA

Function

NR:

description
serine/arginine repetitive matrix protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610367.2 False 3230 mRNA 0.51 8 69972280 69979591
XM_021610359.2 True 3232 mRNA 0.51 8 69972281 69979591

Neighbor

gene id symbol gene type direction distance location
fam98a fam98a coding upstream 206 69964060 ~ 69972074 (+)
rasgrp3 LOC106576952 coding upstream 12585 69905718 ~ 69959695 (+)
ltbp1 LOC106576950 coding upstream 69241 69771001 ~ 69903039 (+)
ttc27 ttc27 coding upstream 204321 69645409 ~ 69767959 (+)
birc6 NA coding upstream 352691 69465958 ~ 69619589 (+)
nvl LOC106576956 coding downstream 10716 69990307 ~ 69999497 (+)
zgc:153981 LOC106576960 coding downstream 71892 70051483 ~ 70052917 (+)
LOC118966712 LOC105023263 coding downstream 142421 70122012 ~ 70122911 (+)
chchd1 chch1 coding downstream 157239 70136830 ~ 70143694 (+)
LOC110528418 LOC106576964 coding downstream 183600 70163191 ~ 70188938 (+)
G77660 NA non-coding upstream 39554 69932502 ~ 69932726 (+)
G77649 NA non-coding upstream 56328 69915723 ~ 69915952 (+)
G77640 NA non-coding upstream 64143 69907870 ~ 69908137 (+)
G76928 NA non-coding upstream 328006 69644008 ~ 69644274 (+)
G77684 NA non-coding downstream 1884 69981475 ~ 69981809 (+)
G77709 NA non-coding downstream 44500 70024091 ~ 70024385 (+)
G77875 NA non-coding downstream 58553 70038144 ~ 70038358 (+)
G77876 NA non-coding downstream 58777 70038368 ~ 70038578 (+)
G77878 NA non-coding downstream 60422 70040013 ~ 70040341 (+)
G75747 NA other upstream 1597351 68374505 ~ 68374929 (+)
G74139 NA other upstream 3187311 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 3213296 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 3548199 66417495 ~ 66424081 (+)
G73515 NA other upstream 3683811 66287679 ~ 66288469 (+)
G78121 NA other downstream 592074 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 1056879 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 3572025 73551616 ~ 73571737 (+)
G83836 NA other downstream 4929634 74909225 ~ 74909806 (+)
G83829 NA other downstream 5133069 75112660 ~ 75114190 (+)

Expression


Co-expression Network