LOC110528376 (LOC106576957)


Basic Information

Item Value
gene id LOC110528376
gene name LOC106576957
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 69993128 ~ 70022403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610399.2
CCTCCGCAGATAATTATTTCAGTCCCAGGAACCGTTCTGCCGCACCCACAATGATATCTATTTTCATGGAATTCAAACTCACATCTACTACAGTCACAAACGCTCTAGACAACATGAAAACATCCTAACCACCtatgctagggcgagtaaaatggtcagagtgaggtgttctttcATTTGTATCTGGAAGTAACTAGCCAATTTTGGTCAGTTAGCTTGCTTGACTACCgttgttgtgaggtcagaacgctcggatcaaccctactcatcgACCATAGCTTCCAACGTGTGCTCTGAGCGCACTATGTGAGAGAATCTGCGAATCGGCATCCAAAACGTTTGTTTGTGACGCAGATCGGGGTTTGCGATCTCTATTTCAATCAGATCCtgcgttgacaccaggcagggtaGCTTGAGTCCGTTAGGTAACCGAGAAGTTGGTGTCAAGTTAATACTTTTAGCTAATAATATAAATGGTTTGAGATTCACTACTTGTTACTTACACCAAAGAAAGATGGGGAACCGTGTCCCTCGTGAGGATTACGAATGGGTTTATACAGATCAGCCACACGCAGACAGGAGGAAAGACATTTTGGCAAAGTACCCAGAAATAAAGACCCTAATGGGGCCTGATCCCAGGCTGAAGTGGATTGTTTGCATGATGGTACTCATCCAGTTTTTAGCATTCTATCTGGTCAAAGACCTAGACTGGAAATGGGTTTTGTTCTGGACTTATGCCTTTGGCAGCTGTATCAACCACTCCATGACCCTGGCCATCCATGAGATCTCCCACAACACAGCGTTTGGCAACAGCAGGGCCATGTGGAACCGCTGGTTCGCCATGTTTGCCAACCTGCCCATCGGGCTGCCGTATTCTGCCTCCTTTAAGCGCTACCACCTGGACCACCACCGCTACCTGGGAGGAGATGGCGTGGACGTGGACATCCCCACTGAATTTGAGGGCTGGTTCTTCTGCACACGCTTCCGTAAGTTTGTCTGGATCATCCTCCAGCCTCTGTTCTACGCCATCCGCCCTCTCTGCATCAACCCCAAGCCCATCACCAGGCTGGAGGTGGCCAACGTGGCTGTGCAGCTGTCCTTCAATGTGGCCCTCTACTGGCTGTTTGGAGCCAAGCCTGTGGTCTACATGATGGCAGGTTCCTTGCTGGGAATGGGCCTGCACCCCATCTCTGGACACTTCATCGCTGAGCACTACATGTTCCTCAAGGGCCATGAGACGTACTCATACTATGGCTCCCTCAACCTGCTCACCTTCAACGTGGGCTACCACAACGAGCACCACGACTTCCCCAGCATCCCAGGACGTAGGCTACCTCTGGTGAAGAAAATCGCATCAGAGTACTACGATGACCTGCCCCAGTACACATCATGGGTGAAGGTCCTGTATGACTTCATTATGGACGACCGGCTCAGCCCCTACTCTCGTGTGAAGAGGAGGCTAAAGGGAGATGTCAAGCTGGAGTAaatccttcccctccctctctcttactcttaacaaaaaaactgaagtAAATTGACACCAGCCCCAATTAACCACCAAGACTTAACAGCTTTTGCATATTAATAGACATTTGAACAGAATGTGTAGTGtctgtggacagtatgtgtgacATGTATGTGTTAATGTTTTCCTCCTCAGGAACAACTGAAAGGGGTGAGGGAACATGGTTATCTAGTCTTCTCTAGCAGAATTACAACCATTACTGCTTGCATTCCAATTAGTCCTTATTACACAAGCTTGTCATTTCTCCTATTTGTTTTTCCTGAAAAGCCCATTTATTGCAGTTGTGGTCATTTTAGAAACCTGTAATAGGGATGACGGCAAGTCTGAATATTTTTCTATTCACAAATTTTGATTTTTAATTTATATGAAGAATTTAACTCTAGATTACTTAGGAGTTCAGCATCAGTTGCTGAATGTGTTGAATATTTGAGATCCTGTTTGTATAGTTTATTTTCTGATCAGTTTTATTTAATCTCTTTGAAAGAGGTGTAGCAATATACAACCATATCTTATTGTGAAAAAGTTTTATTGGAAAGGGTGGAGGATACTCTTGCACCAGTTAGATCAGGCCACCTAAACAGTTTTTTTTCTGCTTTGGGGGGGTGAGAAGCCTAGCTTATCACTTCTCTTACGTGTCTACTGAGGCGAGTTGCAAATTCCATGCTAGAAATGTTATGTTCTCATTTCACTCGTAAAATATTGAGTTCTGTCCTTTCTTGTAGACTACTACACTTACCATATCACAGTGTGAGTAGAATGAACATATTGGCTAAAGTTGAGCTTATTTTAGCTCTTTTTAGATCGGAGGGCCATTTTGTATTGTACTTGCCAACAACCCCTGTTCAATAGCTGATTGTCTGAATCAGTTATTGCTCCAATTTTACATTTAATTTGGCACAATGGGGAGAAAGAATGGCATTAGATCAAACATTCATTTTTGTTTAATTTATGTTTGCCCTTTTATGGAAAGACAATGTGGCCTTGTGTAAATGACTGTAATGCAGATGCTGCGTTCATATCTTGTCAGATGGTGGAAATACAAAAGGACTAGCCTATAGCTTATGTATGCTCTAAACACCAAGGGTTCTCCTTTTATAGAAACTCTAAATGCACATAAAATCTGAATGTTATAGCAAATTTAGTTTTTAGACAATGAGTCTTTCAACAATCACTATTCTGACAGTCTCTTATGGAAACCCAATCAAAGGCCAAATTAATTGAAACCAAATCTAGGTAAGAGTAACTCTTAAGTCTGTCTTTTGTTCCATGTACTGTATGATTGTTGTTACAATTCCACTAGATTCTGAAAGTCTTGATTATTTCCAATTGTGTCCTTAACATTTGCAATGACGTAAGTAGCCTAATTTGTGAGAAAGACAAAATGGCAAATTTTAAGATGATTGACCTCAAGAACCAGGCCACACCCTtagtcactgagtttgaaagcCTCTCAAATATGTCACTTTAAAGTAGCTACCACTGAGGGAGAGAAAGCCAATTGGTGTATCACATAGCCAAACCATGATGTGGATAGATATTGTCCAAAGTGGATTGGAAACTTGCTGACATTGGTGCTGAATCACAAATTTACCCTTATACTCTCCATGTAGACCTGGAATGGTAATAGTTCCATCTTGCCATCTGATAGGCGTGGAGGGAGATTGGCCATATCGAATAGACCTACACTTATCCAATCTATTACAGATTTACCTAGGGTTGATTTGCGATTCAGGGGGCCTCTGAAACAAGGTAGAGGGGTTGTTGGTTACATCTACATCAGTATTAAACAAACTGAACTCATGCTAAGGGTGAAAGAATGTTTATATTCTCAACTCAAACATTTTAATTTGGAATATTCTGCAGCAATAGTCATGATTACATAACTGCATCCAATATGATTTTATTAAACTAACTGACCTGG
>TU86003
AACCGTTCTGCCGCACCCACAATGATATCTATTTTCATGGAATTCAAACTCACATCTACTACAGTCACAAACGCTCTAGACAACATGAAAACATCCTAACCACCtatgctagggcgagtaaaatggtcagagtgaggtgttctttcATTTGTATCTGGAAGTAACTAGCCAATTTTGGTCAGTTAGCTTGCTTGACTACCgttgttgtgaggtcagaacgctcggatcaaccctactcatcgACCATAGCTTCCAACGTGTGCTCTGAGCGCACTATGTGAGAGAATCTGCGAATCGGCATCCAAAACGTTTGTTTGTGACGCAGATCGGGGTTTGCGATCTCTATTTCAATCAGATCCtgcgttgacaccaggcagggtaGCTTGAGTCCGTTAGGTAACCGAGAAGTTGGTGTCAAGTTAATACTTTTAGCTAATAATATAAATGGTTTGAGATTCACTACTTGTTACTTACACCAAAGAAAGATGGGGAACCGTGTCCCTCGTGAGGATTACGAATGGGTTTATACAGATCAGCCACACGCAGACAGGAGGAAAGACATTTTGGGTGAAGAAAATCGCATCAGAGTACTACGATGACCTGCCCCAGTACACATCATGGGTGAAGGTCCTGTATGACTTCATTATGGACGACCGGCTCAGCCCCTACTCTCGTGTGAAGAGGAGGCTAAAGGGAGATGTCAAGCTGGAGTAaatccttcccctccctctctcttactcttaacaaaaaaactgaagtAAATTGACACCAGCCCCAATTAACCACCAAGACTTAACAGCTTTTGCATATTAATAGACATTTGAACAGAATGTGTAGTGtctgtggacagtatgtgtgacATGTATGTGTTAATGTTTTCCTCCTCAGGAACAACTGAAAGGGGTGAGGGAACATGGTTATCTAGTCTTCTCTAGCAGAATTACAACCATTACTGCTTGCATTCCAATTAGTCCTTATTACACAAGCTTGTCATTTCTCCTATTTGTTTTTCCTGAAAAGCCCATTTATTGCAGTTGTGGTCATTTTAGAAACCTGTAATAGGGATGACGGCAAGTCTGAATATTTTTCTATTCACAAATTTTGATTTTTAATTTATATGAAGAATTTAACTCTAGATTACTTAGGAGTTCAGCATCAGTTGCTGAATGTGTTGAATATTTGAGATCCTGTTTGTATAGTTTATTTTCTGATCAGTTTTATTTAGGCCACCTAAACAGTTTTTTTTCTGCTTTGGGGGGGTGAGAAGCCTAGCTTATCACTTCTCTTACGTGTCTACTGAGGCGAGTTGCAAATTCCATGCTAGAAATGTTATGTTCTCATTTCACTCGTAAAATATTGAGTTCTGTCCTTTCTTGTAGACTACTACACTTACCATATCACAGTGTGAGTAGAATGAACATATTGGCTAAAGTTGAGCTTATTTTAGCTCTTTTTAGATCGGAGGGCCATTTTGTATTGTACTTGCCAACAACCCCTGTTCAATAGCTGATTGTCTGAATCAGTTATTGCTCCAATTTTACATTTAATTTGGCACAATGGGGAGAAAGAATGGCATTAGATCAAACATTCATTTTTGTTTAATTTATGTTTGCCCTTTTATGGAAAGACAATGTGGCCTTGTGTAAATGACTGTAATGCAGATGCTGCGTTCATATCTTGTCAGATGGTGGAAATACAAAAGGACTAGCCTATAGCTTATGTATGCTCTAAACACCAAGGGTTCTCCTTTTATAGAAACTCTAAATGCACATAAAATCTGAATGTTATAGCAAATTTAGTTTTTAGACAATGAGTCTTTCAACAATCACTATTCTGACAGTCTCTTATGGAAACCCAATCAAAGGCCAAATTAATTGAAACCAAATCTAGGTAAGAGTAACTCTTAAGTCTGTCTTTTGTTCCATGTACTGTATGATTGTTGTTACAATTCCACTAGATTCTGAAAGTCTTGATTATTTCCAATTGTGTCCTTAACATTTGCAATGACGTAAGTAGCCTAATTTGTGAGAAAGACAAAATGGCAAATTTTAAGATGATTGACCTCAAGAACCAGGCCACACCCTtagtcactgagtttgaaagcCTCTCAAATATGTCACTTTAAAGTAGCTACCACTGAGGGAGAGAAAGCCATGATGTGGATAGATATTGTCCAAAGTGGATTGGAAACTTGCTGACATTGGTGCTGAATCACAAATTTACCCTTATACTCTCCATGTAGACCTGGAATGGTAATAGTTCCATCTTGCCATCTGATAGGCGTGGAGGGAGATTGGCCATATCGAATAGACCTACACTTATCCAATCTATTACAGATTTACCTAGGGTTGATTTGCGATTCAGGGGGCCTCTGAAACAAGGTAGAGGGGTTGTTGGTTACATCTACATCAGTATTAAACAAACTGAACTCATGCTAAGGGTGAAAGAATGTTTATATTCTCAACTCAAACATTTTAATTTGGAATATTCTGCAGCAATAGTCATGATTACATAACTGCATCCAATATGATTTTATTAAACTAACTGACCTGGAAAAAAA
>TU86002
AACCGTTCTGCCGCACCCACAATGATATCTATTTTCATGGAATTCAAACTCACATCTACTACAGTCACAAACGCTCTAGACAACATGAAAACATCCTAACCACCtatgctagggcgagtaaaatggtcagagtgaggtgttctttcATTTGTATCTGGAAGTAACTAGCCAATTTTGGTCAGTTAGCTTGCTTGACTACCgttgttgtgaggtcagaacgctcggatcaaccctactcatcgACCATAGCTTCCAACGTGTGCTCTGAGCGCACTATGTGAGAGAATCTGCGAATCGGCATCCAAAACGTTTGTTTGTGACGCAGATCGGGGTTTGCGATCTCTATTTCAATCAGATCCtgcgttgacaccaggcagggtaGCTTGAGTCCGTTAGGTAACCGAGAAGTTGGTGTCAAGTTAATACTTTTAGCTAATAATATAAATGGTTTGAGATTCACTACTTGTTACTTACACCAAAGAAAGATGGGGAACCGTGTCCCTCGTGAGGATTACGAATGGGTTTATACAGATCAGCCACACGCAGACAGGAGGAAAGACATTTTGGGTGAAGAAAATCGCATCAGAGTACTACGATGACCTGCCCCAGTACACATCATGGGTGAAGGTCCTGTATGACTTCATTATGGACGACCGGCTCAGCCCCTACTCTCGTGTGAAGAGGAGGCTAAAGGGAGATGTCAAGCTGGAGTAaatccttcccctccctctctcttactcttaacaaaaaaactgaagtAAATTGACACCAGCCCCAATTAACCACCAAGACTTAACAGCTTTTGCATATTAATAGACATTTGAACAGAATGTGTAGTGtctgtggacagtatgtgtgacATGTATGTGTTAATGTTTTCCTCCTCAGGAACAACTGAAAGGGGTGAGGGAACATGGTTATCTAGTCTTCTCTAGCAGAATTACAACCATTACTGCTTGCATTCCAATTAGTCCTTATTACACAAGCTTGTCATTTCTCCTATTTGTTTTTCCTGAAAAGCCCATTTATTGCAGTTGTGGTCATTTTAGAAACCTGTAATAGGGATGACGGCAAGTCTGAATATTTTTCTATTCACAAATTTTGATTTTTAATTTATATGAAGAATTTAACTCTAGATTACTTAGGAGTTCAGCATCAGTTGCTGAATGTGTTGAATATTTGAGATCCTGTTTGTATAGTTTATTTTCTGATCAGTTTTATTTAGGCCACCTAAACAGTTTTTTTTCTGCTTTGGGGGGGTGAGAAGCCTAGCTTATCACTTCTCTTACGTGTCTACTGAGGCGAGTTGCAAATTCCATGCTAGAAATGTTATGTTCTCATTTCACTCGTAAAATATTGAGTTCTGTCCTTTCTTGTAGACTACTACACTTACCATATCACAGTGTGAGTAGAATGAACATATTGGCTAAAGTTGAGCTTATTTTAGCTCTTTTTAGATCGGAGGGCCATTTTGTATTGTACTTGCCAACAACCCCTGTTCAATAGCTGATTGTCTGAATCAGTTATTGCTCCAATTTTACATTTAATTTGGCACAATGGGGAGAAAGAATGGCATTAGATCAAACATTCATTTTTGTTTAATTTATGTTTGCCCTTTTATGGAAAGACAATGTGGCCTTGTGTAAATGACTGTAATGCAGATGCTGCGTTCATATCTTGTCAGATGGTGGAAATACAAAAGGACTAGCCTATAGCTTATGTATGCTCTAAACACCAAGGGTTCTCCTTTTATAGAAACTCTAAATGCACATAAAATCTGAATGTTATAGCAAATTTAGTTTTTAGACAATGAGTCTTTCAACAATCACTATTCTGACAGTCTCTTATGGAAACCCAATCAAAGGCCAAATTAATTGAAACCAAATCTAGGTAAGAGTAACTCTTAAGTCTGTCTTTTGTTCCATGTACTGTATGATTGTTGTTACAATTCCACTAGATTCTGAAAGTCTTGATTATTTCCAATTGTGTCCTTAACATTTGCAATGACGTAAGTAGCCTAATTTGTGAGAAAGACAAAATGGCAAATTTTAAGATGATTGACCTCAAGAACCAGGCCACACCCTtagtcactgagtttgaaagcCTCTCAAATATGTCACTTTAAAGTAGCTACCACTGAGGGAGAGAAAGCCATGATGTGGATAGATATTGTCCAAAGTGGATTGGAAACTTGCTGACATTGGTGCTGAATCACAAATTTACCCTTATACTCTCCATGTAGACCTGGAATGGTAATAGTTCCATCTTGCCATCTGATAGGCGTGGAGGGAGATTGGCCATATCGAATAGACCTACACTTATCCAATCTATTACAGATTTACCTAGGGTTGATTTGCGATTCAGGGGGCCTCTGAAACAAGGTAGAGGGGTTGTTGGTTACATCTACATCAGTATTAAACAAACTGAACTCATGCTAAGGGTGAAAGAATGTTTATATTCTCAACTCAAACATTTTAATTTGGAATATTCTGCAGCAATAGTCATGATTACATAACTGCATCCAATATGATTTTATTAAACTAACTGACCTGGTTTTGTCTCATCCTTTTTGATGGTTAACTATAAGGTCCTGTCATAAAATGGAATAGCAGGTCAGATCTATTGGGTATAGGCTAGAGCTGTACTGGTAATTGCATTAAGGCtggggttgggtaggttacttttaTGTAATCCGTTAGTTACCTGTCACGTGTAATCATTAATGTAACAGATTACCCAAACTAACAATCTGATTACATTGTTACTTTGACTACTTTAAGgcattagaagaaaaaaaaagtcctcaccagggtcttggcctgactgcagttcggtgtcaACTGAGacacggatgaatcccagtttcaactgtaccgggcagatggcggaccgcatgtatggcattgtgtggacAAGTGGTTTGCTGTTGTGAACAGACTGCCCC

Function

NR:

description
sphingolipid delta(4)-desaturase DES1-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610399.2 False 3446 mRNA 0.42 3 70000317 70022403
TU86003 False 2560 lncRNA 0.32 5 69993128 70022374
TU86002 True 2944 lncRNA 0.43 4 69999926 70022374
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528285 NA coding downstream 431163 69566181 ~ 69569154 (-)
exo1 exo1 coding downstream 554584 69437322 ~ 69445733 (-)
LOC118965314 NA coding downstream 568129 69421067 ~ 69432188 (-)
si:ch211-125o16.4 LOC106576941 coding downstream 599744 69386236 ~ 69400573 (-)
LOC110528163 LOC106576940 coding downstream 637220 69288453 ~ 69363097 (-)
LOC110528384 LOC106576958 coding upstream 7642 70030045 ~ 70036532 (-)
LOC118965320 LOC106576961 coding upstream 34149 70056552 ~ 70075898 (-)
LOC118965321 LOC106576963 coding upstream 60432 70082835 ~ 70088715 (-)
LOC110528401 LOC106576963 coding upstream 73286 70095689 ~ 70111417 (-)
camk2g2 LOC106576966 coding upstream 382937 70405340 ~ 70512273 (-)
G77856 NA non-coding downstream 10740 69989076 ~ 69989577 (-)
G77855 NA non-coding downstream 11820 69988260 ~ 69988497 (-)
G77799 NA non-coding downstream 24739 69975088 ~ 69975578 (-)
G77840 fam98a non-coding downstream 29466 69963980 ~ 69970851 (-)
G77795 NA non-coding downstream 41272 69957132 ~ 69959045 (-)
G77870 NA non-coding upstream 2953 70025356 ~ 70025765 (-)
G78217 NA non-coding upstream 28615 70051018 ~ 70051230 (-)
G78218 NA non-coding upstream 30181 70052584 ~ 70053194 (-)
G78219 NA non-coding upstream 31551 70053954 ~ 70054277 (-)
LOC110527951 coda1 other downstream 1310088 68575379 ~ 68690343 (-)
G75682 NA other downstream 1788611 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1838315 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2318587 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 2612273 67386509 ~ 67389299 (-)
G78414 NA other upstream 332513 70354916 ~ 70355591 (-)
G79616 NA other upstream 1299547 71321950 ~ 71386523 (-)
G79700 NA other upstream 1447279 71469435 ~ 71470755 (-)
G79904 NA other upstream 1720642 71743045 ~ 71743809 (-)

Expression

LOC110528376(LOC106576957) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110528376(LOC106576957) Expression in each Bioproject

Bar chart with 21 bars.
LOC110528376(LOC106576957) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network