zgc:153981 (LOC106576960)


Basic Information

Item Value
gene id zgc:153981
gene name LOC106576960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70051483 ~ 70052917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610425.2
ACCCccacccccatacacacacacacgcacacacccccgCCTGCTGGAGTTGGTCACACACGGCCAGAGGGCCGCAGTAGTTGAGTCAGTCAAGGTAGTTCCACTGTCTAGGGAGAATGTCAAAGGGAGAGCAGCAAGACCTGGTGGCTATTAAAGAACTAGAGTCAATCCTGGAGTCCTGCAAGCTTGAACTGACACCACTAGATGAGGTCTGGCCTAATCTCTACATCGGAAACGTGGCCATAGCTCAGAACAGGGGTGCATTAAAGAAGCTTGGCATCACACACatcctgaacgcagctcactttaaGCAGGGCAGCATCGGTGACCAGGATTACTATGGAAACACCTGTGTGTATTGTGGCTTCCCTACAGAAGACTCATCCCATTTTGACCTCAGCCAGTACTTTAAACCTGCAGCGGACTTCATACACAAGGCCCTGAAGACTAAAGATGgGAAGGTGTTGGTGCATTGCATCATGGGTATAAGTCGTTCCGCCACGCTGGTGCTGGCGTTCCTGATGATGCACTGTCGTCTGCCGCTTCGCACCGCGCTCAAACATGTGACCCAGCGACGCGCCATCTACCCCAACAGACATTTCCTGTCACTACTGCTCACCCTCGACACACAGCTCACACGCAAGAGGAGACTATGTCCTCTTCTCTGACAGTCcttctttcatccctctctcctcccatccctcgcTCGTCTCACCTcatatctatctatccatctcacACACAATCCTTTATACTGGTTGAAAATATGTAGTTGTAGGACTTTTACAGTAGG
>XM_021610434.2
AGAGGGCCGCAGTAGTTGAGTCAGTCAAGGTAGTTCCACTGTCTAGGGAGAATGTCAAAGGGAGAGCAGCAAGACCTGGTGGCTATTAAAGAACTAGAGTCAATCCTGGAGTCCTGCAAGCTTGAACTGACACCACTAGATGAGGTCTGGCCTAATCTCTACATCGGAAACGTCTCAGAACAGGGGTGCATTAAAGAAGCTTGGCATCACACACatcctgaacgcagctcactttaaGCAGGGCAGCATCGGTGACCAGGATTACTATGGAAACACCTGTGTGTATTGTGGCTTCCCTACAGAAGACTCATCCCATTTTGACCTCAGCCAGTACTTTAAACCTGCAGCGGACTTCATACACAAGGCCCTGAAGACTAAAGATGgGAAGGTGTTGGTGCATTGCATCATGGGTATAAGTCGTTCCGCCACGCTGGTGCTGGCGTTCCTGATGATGCACTGTCGTCTGCCGCTTCGCACCGCGCTCAAACATGTGACCCAGCGACGCGCCATCTACCCCAACAGACATTTCCTGTCACTACTGCTCACCCTCGACACACAGCTCACACGCAAGAGGAGACTATGTCCTCTTCTCTGACAGTCcttctttcatccctctctcctcccatccctcgcTCGTCTCACCTcatatctatctatccatctcacACACAATCCTTTATACTGGTTGAAAATATGTAGTTGTAGGACTTTTACAGTAGG

Function

NR:

description
dual specificity protein phosphatase 13-like isoform X2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610425.2 False 793 mRNA 0.51 3 70051483 70052917
XM_021610434.2 True 720 mRNA 0.50 3 70051548 70052917

Neighbor

gene id symbol gene type direction distance location
nvl LOC106576956 coding upstream 51986 69990307 ~ 69999497 (+)
si:ch211-195b21.5 LOC106576954 coding upstream 71892 69972280 ~ 69979591 (+)
fam98a fam98a coding upstream 79409 69964060 ~ 69972074 (+)
rasgrp3 LOC106576952 coding upstream 91788 69905718 ~ 69959695 (+)
ltbp1 LOC106576950 coding upstream 148444 69771001 ~ 69903039 (+)
LOC118966712 LOC105023263 coding downstream 69095 70122012 ~ 70122911 (+)
chchd1 chch1 coding downstream 83913 70136830 ~ 70143694 (+)
LOC110528418 LOC106576964 coding downstream 110274 70163191 ~ 70188938 (+)
zswim8 LOC100194729 coding downstream 141378 70194295 ~ 70228504 (+)
LOC110528470 LOC106576965 coding downstream 177042 70229959 ~ 70404623 (+)
G77888 NA non-coding upstream 1164 70050049 ~ 70050319 (+)
G77884 NA non-coding upstream 4516 70046698 ~ 70046967 (+)
G77880 NA non-coding upstream 9155 70042127 ~ 70042328 (+)
G77878 NA non-coding upstream 11142 70040013 ~ 70040341 (+)
G77876 NA non-coding upstream 12905 70038368 ~ 70038578 (+)
G77890 NA non-coding downstream 1636 70054553 ~ 70056523 (+)
G77891 NA non-coding downstream 7302 70060219 ~ 70062882 (+)
G77895 NA non-coding downstream 15536 70068453 ~ 70068657 (+)
G77896 NA non-coding downstream 17573 70070490 ~ 70070712 (+)
G77898 NA non-coding downstream 19753 70072670 ~ 70072874 (+)
G75747 NA other upstream 1676554 68374505 ~ 68374929 (+)
G74139 NA other upstream 3266514 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 3292499 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 3627402 66417495 ~ 66424081 (+)
G73515 NA other upstream 3763014 66287679 ~ 66288469 (+)
G78121 NA other downstream 518748 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 983553 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 3498699 73551616 ~ 73571737 (+)
G83836 NA other downstream 4856308 74909225 ~ 74909806 (+)
G83829 NA other downstream 5059743 75112660 ~ 75114190 (+)

Expression


Co-expression Network