LOC118965320 (LOC106576961)


Basic Information

Item Value
gene id LOC118965320
gene name LOC106576961
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70056552 ~ 70075898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984184.1
gatgagagagagagagagagagagagaggaggatgcaaGAGAGACAGAATGTCTGTGTGAGGGGGTGTTTTTTTCACCATCAAACCTTCTATTTTTGCCAGAGCATTCATTCATgcaatttcctctctctctcttcttcttccagGTGGATGGAGTGGCAATGAAGCAGTCTGCCTGACTGAGCATCTCCTCATTATcattccccctcccctctcttcatcCAATTCCCTAGTCCTATCTGccatccccctctccaccacATATAGAGCCAAACAACTACCACCACCGATCACTAACACCATCGCACACAcatatagagacacacacacacacaaacacacacacactacccctctctcctggGATACGATTTGAAGATTCACAAGTGCAGCCTCTCATTTGTAATCAGATGAAAGAGAGGATTATCTCAAGGTTTGCCCAATCTTGTTCCCGGCCAGGATAGAGGgacggaggaggaagaggaggaatagactggagaggagggaggactcTGTGGATGGTGCGTGGCAAAAGGAGATCACCTGTAGAGAACCACTTTCCTTTCCTTTCAAACAACCTGGACTAACAGGGGTTTTATCCTGGGATCCTGGAGGATAACTTGACTCTgacacaaagaaagagagagagagagagagtaaataaaGAAGAGGAACATAAGGATCTTATATTTTTTCTAAAAGGGCTTTCCCATGGCAGAGAGTGGGCATCCCGAGTCAGCACTATACCCACCAGGGGGCAGTGTTTCCCCTGACTCTGCCCTCTGCACCGAccccctcctgcctctctctaagAGTTCCACAGATGGGCTGACAGGTCCTCTGAAGCAGGAGGAACTCAGGAAGGGCTCCAGTGAGCATACGGCTCCATGCTCCCAAAGAGACAGAGAAACGGGCAGACAGAGGCCTTCCCAGGTTGTCCAGCACAACCTCCAACCGGACACATCTGTCCGCGTGGACCCCAGGAATGCTGTCCGCCCTCACACAGCCCATCACCACGAGGAGGGCAACACCAGTCATGGTCACCAAGCCTTCGGAGAGATCCAGGCGCCCCACCCCTTATCATCATCACAGAGAGACTTGGGAGGACTGGATCTATCCAGGCTGAATGTCCAGAGGAGTCACTCAGATCCCCTCCACATGCTCAGGGAGGTCCCTGCCCCTCCACCTCACAGTGAAACCAGCTGCCCTTTGTGCCCAGGGAGAGACTACCTTTCCCAGGATGCCTCTCGTAAGGTTTTCTCCACCTTAGCCTGCAAGCAGCCCTTGCAGCTCCAGCACTGCAATACGACCACAACCAACCCCACTGCCTGCAGACAGGGAAACGGCGGGGGAGGCAGACCCACACAGCAGCCTCAGGACGGGTGTGTCAGGGTCGGTGCCCCTAGCCCCTCTAACACAGCCGCTAACGTCGGCGGTGAGGCCCAACGCCTACAATCATGTGAGGAGGCCATCTGCTATTGCACTTTCGTCCACCCCCACGGGACGTTGAAGGACACTTTTGCGGCATACTGCCACCCCCAACACATCCCCACCCCTGCCCAGCTTCTGCCACACCTTCCGGGCACAGAAGCTGAGTTCAGGGACCAGAGGGTGCTCCCGCCTCACCTGGCgcctaccctcctctccctccctcgcctCATGTCCTCCGTCAGCGAGACAGGGCTGGATGCCAAGCGCCTGCTGCAATGCTGCAACCTCAATTGTAACCTCAACTGCTCCTGGGCCAAAACTCTACACCCTAGTGGAGCCCTGCAGCAGGACATTCAGAAATATAGCTGTATGAGCAGCAACAATGGAGCCACCAGGGACACAGGGACCATGATGTCCCCCAGGGAGCTCAGGGACGTTGGGGTGCAGACGGGCCAGGTCCACGAGACGTGTCTGGCCCACGTGTTCCCCCAGGTCTGCCTGGTGGAGGAGAACGGGAATGAGAACGGGAACGGGAACGAGAACGGGAATGAGACAGACACGTCCCAGAAGCCCCCAGTGAAGGAGGTGAAGTGGGATGCGGAAGGGATGACATGGGAGGTGTACGGGGCTTCTGTGGATCCTGAGGAGCTGGGCCTGGCCATCCAAAAGCACCTGGAGCTGCAGATCAAGGAGACTGCTGGCCTCGCTGCCAAGCTGTCCCGCCAGGATCCAGCTACATCCAGGAAAAGCATTGGTGGTGCCGTTGGCTGGAGGAAGAGGAGCGGGGTGTTGGGCTATATCAGAACCCCAGCCTGCTGCGCACGCTCCAGCACGGCCGTGGACTGAGAGGGGAAACCTGAACACTGGTTTCCATGGTCAAGATGGCAGTTGCTTTATTGCACATCAAATGTGACTCCAATTCACCAGAGATAGTGTCTGGATTAGGTCTGGATTAAGAAAATCTGTGTGGCTGTCAGAATCATGGCATGTGTACAAGAACCTACCTGCTGAAAGAGGTGAATGGAAAGACAGTGAAAGGTTCCATTTGGATGGATTTGATTGGTAACGGTACCTTCATCATCACCGTAGATGCCAAGTGATAGAACAGAGTGCTGCCATAACAGTCATACAAAGTGATATAATGTTTTCTTACTCATTGAAGAATGTTTTatttact
>XM_036984177.1
CACCTGTGAATGAACAATAGTGCACTTTGGAACTGCTGATACGCTCTACACTGAATCCACAGTTTTCGCAGGATCAGGCGTGAGCCCCACAGTCAGAGAGGGGTGTTGTGGCTAATGCAGAGGTCGCTAAACCAACAAGAGAACGAAGAAACCAGAGAGGAGCATTGGAGCACCATAGATGATCCTGTAATATGAAGGTGGATGGAGTGGCAATGAAGCAGTCTGCCTGACTGAGCATCTCCTCATTATcattccccctcccctctcttcatcCAATTCCCTAGTCCTATCTGccatccccctctccaccacATATAGAGCCAAACAACTACCACCACCGATCACTAACACCATCGCACACAcatatagagacacacacacacacaaacacacacacactacccctctctcctggGATACGATTTGAAGATTCACAAGTGCAGCCTCTCATTTGTAATCAGATGAAAGAGAGGATTATCTCAAGGTTTGCCCAATCTTGTTCCCGGCCAGGATAGAGGgacggaggaggaagaggaggaatagactggagaggagggaggactcTGTGGATGGTGCGTGGCAAAAGGAGATCACCTGTAGAGAACCACTTTCCTTTCCTTTCAAACAACCTGGACTAACAGGGGTTTTATCCTGGGATCCTGGAGGATAACTTGACTCTgacacaaagaaagagagagagagagagagtaaataaaGAAGAGGAACATAAGGATCTTATATTTTTTCTAAAAGGGCTTTCCCATGGCAGAGAGTGGGCATCCCGAGTCAGCACTATACCCACCAGGGGGCAGTGTTTCCCCTGACTCTGCCCTCTGCACCGAccccctcctgcctctctctaagAGTTCCACAGATGGGCTGACAGGTCCTCTGAAGCAGGAGGAACTCAGGAAGGGCTCCAGTGAGCATACGGCTCCATGCTCCCAAAGAGACAGAGAAACGGGCAGACAGAGGCCTTCCCAGGTTGTCCAGCACAACCTCCAACCGGACACATCTGTCCGCGTGGACCCCAGGAATGCTGTCCGCCCTCACACAGCCCATCACCACGAGGAGGGCAACACCAGTCATGGTCACCAAGCCTTCGGAGAGATCCAGGCGCCCCACCCCTTATCATCATCACAGAGAGACTTGGGAGGACTGGATCTATCCAGGCTGAATGTCCAGAGGAGTCACTCAGATCCCCTCCACATGCTCAGGGAGGTCCCTGCCCCTCCACCTCACAGTGAAACCAGCTGCCCTTTGTGCCCAGGGAGAGACTACCTTTCCCAGGATGCCTCTCGTAAGGTTTTCTCCACCTTAGCCTGCAAGCAGCCCTTGCAGCTCCAGCACTGCAATACGACCACAACCAACCCCACTGCCTGCAGACAGGGAAACGGCGGGGGAGGCAGACCCACACAGCAGCCTCAGGACGGGTGTGTCAGGGTCGGTGCCCCTAGCCCCTCTAACACAGCCGCTAACGTCGGCGGTGAGGCCCAACGCCTACAATCATGTGAGGAGGCCATCTGCTATTGCACTTTCGTCCACCCCCACGGGACGTTGAAGGACACTTTTGCGGCATACTGCCACCCCCAACACATCCCCACCCCTGCCCAGCTTCTGCCACACCTTCCGGGCACAGAAGCTGAGTTCAGGGACCAGAGGGTGCTCCCGCCTCACCTGGCgcctaccctcctctccctccctcgcctCATGTCCTCCGTCAGCGAGACAGGGCTGGATGCCAAGCGCCTGCTGCAATGCTGCAACCTCAATTGTAACCTCAACTGCTCCTGGGCCAAAACTCTACACCCTAGTGGAGCCCTGCAGCAGGACATTCAGAAATATAGCTGTATGAGCAGCAACAATGGAGCCACCAGGGACACAGGGACCATGATGTCCCCCAGGGAGCTCAGGGACGTTGGGGTGCAGACGGGCCAGGTCCACGAGACGTGTCTGGCCCACGTGTTCCCCCAGGTCTGCCTGGTGGAGGAGAACGGGAATGAGAACGGGAACGGGAACGAGAACGGGAATGAGACAGACACGTCCCAGAAGCCCCCAGTGAAGGAGGTGAAGTGGGATGCGGAAGGGATGACATGGGAGGTGTACGGGGCTTCTGTGGATCCTGAGGAGCTGGGCCTGGCCATCCAAAAGCACCTGGAGCTGCAGATCAAGGAGACTGCTGGCCTCGCTGCCAAGCTGTCCCGCCAGGATCCAGCTACATCCAGGAAAAGCATTGGTGGTGCCGTTGGCTGGAGGAAGAGGAGCGGGGTGTTGGGCTATATCAGAACCCCAGCCTGCTGCGCACGCTCCAGCACGGCCGTGGACTGAGAGGGGAAACCTGAACACTGGTTTCCATGGTCAAGATGGCAGTTGCTTTATTGCACATCAAATGTGACTCCAATTCACCAGAGATAGTGTCTGGATTAGGTCTGGATTAAGAAAATCTGTGTGGCTGTCAGAATCATGGCATGTGTACAAGAACCTACCTGCTGAAAGAGGTGAATGGAAAGACAGTGAAAGGTTCCATTTGGATGGATTTGATTGGTAACGGTACCTTCATCATCACCGTAGATGCCAAGTGATAGAACAGAGTGCTGCCATAACAGTCATACAAAGTGATATAATGTTTTCTTACTCATTGAAGAATGTTTTatttact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984184.1 False 2607 mRNA 0.54 2 70056552 70066441
XM_036984177.1 True 2659 mRNA 0.54 3 70056552 70075898

Neighbor

gene id symbol gene type direction distance location
LOC110528384 LOC106576958 coding downstream 20020 70030045 ~ 70036532 (-)
LOC110528376 LOC106576957 coding downstream 34149 69993128 ~ 70022403 (-)
LOC110528285 NA coding downstream 487398 69566181 ~ 69569154 (-)
exo1 exo1 coding downstream 610819 69437322 ~ 69445733 (-)
LOC118965314 NA coding downstream 624364 69421067 ~ 69432188 (-)
LOC118965321 LOC106576963 coding upstream 6937 70082835 ~ 70088715 (-)
LOC110528401 LOC106576963 coding upstream 19791 70095689 ~ 70111417 (-)
camk2g2 LOC106576966 coding upstream 329442 70405340 ~ 70512273 (-)
si:dkey-174i8.1 LOC106576967 coding upstream 447012 70522910 ~ 70526933 (-)
cgas mb21d1 coding upstream 634976 70710874 ~ 70713631 (-)
G78209 NA non-coding downstream 65 70054698 ~ 70056487 (-)
G78219 NA non-coding downstream 2275 70053954 ~ 70054277 (-)
G78218 NA non-coding downstream 3358 70052584 ~ 70053194 (-)
G78217 NA non-coding downstream 5322 70051018 ~ 70051230 (-)
G78237 NA non-coding upstream 4160 70080058 ~ 70080456 (-)
G78301 LOC106576964 non-coding upstream 110783 70186681 ~ 70188815 (-)
G78313 NA non-coding upstream 131670 70207568 ~ 70209802 (-)
G78318 NA non-coding upstream 157648 70233546 ~ 70233762 (-)
G78321 NA non-coding upstream 162447 70238345 ~ 70238672 (-)
LOC110527951 coda1 other downstream 1366323 68575379 ~ 68690343 (-)
G75682 NA other downstream 1844846 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1894550 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2374822 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 2668508 67386509 ~ 67389299 (-)
G78414 NA other upstream 279018 70354916 ~ 70355591 (-)
G79616 NA other upstream 1246052 71321950 ~ 71386523 (-)
G79700 NA other upstream 1393784 71469435 ~ 71470755 (-)
G79904 NA other upstream 1667147 71743045 ~ 71743809 (-)

Expression


Co-expression Network