LOC118965321 (LOC106576963)


Basic Information

Item Value
gene id LOC118965321
gene name LOC106576963
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70082835 ~ 70088715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984194.1
CACAGTTTTCGCAGGATCAGGCGTGAGCCCCACAGTCAGAGAGGGGTGTTGTGGCTAATGCAGAGGTCGCTAAACCAACAAGAGAACGAAGAAACCAGAGAGGAGCATTGGAGCACCATAGATGATCCTGTAATATGAAGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTTGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTGCACATGATGGTGGATGGACAAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGCCTCCATGCAGGAATCGTTCCGAGAGGGCTCCGAGAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACAAATTA
>TU86507
tccaaccCTTTTCAACcatctttctctcatctctaatCTCCTCCCTCACTCAATTTCTCACCCCCCACTCtctatctctgactctctccccctccactccctccgcTCGTCCTCTCTCAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGCCTCCATGCAGGAATCGTTCCGAGAGGGCTCCGAGAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACA
>TU86508
tccaaccCTTTTCAACcatctttctctcatctctaatCTCCTCCCTCACTCAATTTCTCACCCCCCACTCtctatctctgactctctccccctccactccctccgcTCGTCCTCTCTCAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGGTGAGGGATTCTACTATCCTTTGAGAGCAAAGAGGGAAAGATCAATACATCTAAAGCTATCCTTTGGACTGACAGAACGTAGCTAGATACATGTTTACTGACAGAAACCAAAATAAATAGATTTGTAATAatatctgtatatactgtattatgtcAGCATGTAATAACATATAATGTAATAATATCAGCTTATATTTCACAATGGTAATTACTGTAAGCTCTTTTTTAGGTTATACTAATTCCCCTGCATACCAATGTTCAATACCATAATGTACTTCCTGTAAATGAGAGACTAACACTCCTTGCGTGTGTGCTTGTGACATGTCCTTCTGTTTTCCAGCCTCCATGCAGGAATCGTTCCGAGAGGGCTCCGAGAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACA
>TU86509
GTAATCCTCATCTCTTCTAAAGACTGATTCTCTCCATTCCGACTCTTACAGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGCCTCCATGCAGGAATCGTTCCGAGAGGGCTCCGAGAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACA
>TU86510
TTAACTGACAGGCCTGGTTAGATAAAGGTGTCAATTAAAATATGTGGCCTCTGACCCCTGCAGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTTGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTG
>TU86511
ACAGTTTTCGCAGGATCAGGCGTGAGCCCCACAGTCAGAGAGGGGTGTTGTGGCTAATGCAGAGGTCGCTAAACCAACAAGAGAACGAAGAAACCAGAGAGGAGCATTGGAGCACCATAGATGATCCTGTAATATGAAGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTTGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTG

Function

NR:

description
rap1 GTPase-GDP dissociation stimulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984194.1 False 2614 mRNA 0.49 10 70082835 70088715
TU86507 False 1926 TUCP 0.46 4 70082840 70085385
TU86508 False 2266 TUCP 0.48 3 70082840 70085385
TU86509 False 1717 TUCP 0.49 3 70082840 70085009
TU86510 False 704 TUCP 0.56 5 70085938 70087657
TU86511 True 780 TUCP 0.50 6 70085938 70088714

Neighbor

gene id symbol gene type direction distance location
LOC118965320 LOC106576961 coding downstream 6937 70056552 ~ 70075898 (-)
LOC110528384 LOC106576958 coding downstream 46303 70030045 ~ 70036532 (-)
LOC110528376 LOC106576957 coding downstream 60432 69993128 ~ 70022403 (-)
LOC110528285 NA coding downstream 513681 69566181 ~ 69569154 (-)
exo1 exo1 coding downstream 637102 69437322 ~ 69445733 (-)
LOC110528401 LOC106576963 coding upstream 6974 70095689 ~ 70111417 (-)
camk2g2 LOC106576966 coding upstream 316625 70405340 ~ 70512273 (-)
si:dkey-174i8.1 LOC106576967 coding upstream 434195 70522910 ~ 70526933 (-)
cgas mb21d1 coding upstream 622159 70710874 ~ 70713631 (-)
eef1a1a LOC106576970 coding upstream 625908 70714623 ~ 70729159 (-)
G78237 NA non-coding downstream 2379 70080058 ~ 70080456 (-)
G78233 NA non-coding downstream 9559 70073074 ~ 70073276 (-)
G78231 NA non-coding downstream 11635 70070736 ~ 70071200 (-)
G78209 NA non-coding downstream 26348 70054698 ~ 70056487 (-)
G78219 NA non-coding downstream 28558 70053954 ~ 70054277 (-)
G78301 LOC106576964 non-coding upstream 97966 70186681 ~ 70188815 (-)
G78313 NA non-coding upstream 118853 70207568 ~ 70209802 (-)
G78318 NA non-coding upstream 144831 70233546 ~ 70233762 (-)
G78321 NA non-coding upstream 149630 70238345 ~ 70238672 (-)
G78322 NA non-coding upstream 152184 70240899 ~ 70241162 (-)
LOC110527951 coda1 other downstream 1392606 68575379 ~ 68690343 (-)
G75682 NA other downstream 1871129 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1920833 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2401105 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 2694791 67386509 ~ 67389299 (-)
G78414 NA other upstream 266201 70354916 ~ 70355591 (-)
G79616 NA other upstream 1233235 71321950 ~ 71386523 (-)
G79700 NA other upstream 1380967 71469435 ~ 71470755 (-)
G79904 NA other upstream 1654330 71743045 ~ 71743809 (-)
G80957 NA other upstream 2119214 72207929 ~ 72211089 (-)

Expression


Co-expression Network