LOC110528401 (LOC106576963)


Basic Information

Item Value
gene id LOC110528401
gene name LOC106576963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70095689 ~ 70111417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984204.1
gagggagggagggagacacaggCTGCTTAGCTGACTGAAGCAGAGCTGGGAGAAGAGGCACGCCTGGCCTGAAGGAGGGCTGCTCTTCTCTCATTACtaagccaaacacacacacacactcacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacgcacacgcacacgcacacacacacacacacacacacagccagggagcCGGGATAGAATCCTAGGGAGACAGAGTGAGCGCCTGCCGACCTGCAACCATGGCCGACATGGAATCTCTAACAGAGGCGTTGAGTGCCATCAGTGTGAGCACTGAGCTGGTAGAGCAGGAGTTGAAGCCTCATCTGGACACCCTGCTGGCTGTGCTACTGGAGAAGAAGAAGGGTGCTGCTGAGGAGATCGCCTCCAGTGGGATCCTTCCCATCTTAGCCCAGTCCCTCAGGGTGAAGAGTCCTCTCACCAACCAAGTGGCATTGGTGGTTGCAGAAATGGCCAGGGAAGCGGCGGTGAGGGACCCGTGCATTGATGCGGGGCTGGTGACGGTTCTGGTGCCCCTGCTGAACAGTGCAGACGAGGAGCTGCTGCTCCACACTGGCAGAGCCATCGGACGCATCTGCTTCGACAACAcgGCCCAGCAGGATCAGCTGGTGCAGTGTGGGGTGATCCCCAGGCTGGTGGCCATCATGAGGGAGAACCTAGAGAACGACCCACTGGTCAACGTGTGTCTGCTGGCCCTCTGTAACCTGGCCGACATGGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTCGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTGCGCATGATGGTGGATGGACAAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGCCTCCATGCAGGAATCGTTCCGAGAGGCAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACAAATTA
>XM_036984207.1
agagggagggagggagacacaggCTGCTTAGCTGACTGAAGCAGAGCTGGGAGAAGAGGCACGCCTGGCCTGAAGGAGGGCTGCTCTTCTCTCATTACtaagccaaacacacacacacactcacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacgcacacgcacacgcacacacacacacacacacacacagccagggagcCGGGATAGAATCCTAGGGAGACAGAGTGAGCGCCTGCCGACCTGCAACCATGGCCGACATGGAATCTCTAACAGAGGCGTTGAGTGCCATCAGTGTGAGCACTGAGCTGGTAGAGCAGGAGTTGAAGCCTCATCTGGACACCCTGCTGGCTGTGCTACTGGAGAAGACGGCGGTGAGGGACCCGTGCATTGATGCGGGGCTGGTGACGGTTCTGGTGCCCCTGCTGAACAGTGCAGACGAGGAGCTGCTGCTCCACACTGGCAGAGCCATCGGACGCATCTGCTTCGACAACAcgGCCCAGCAGGATCAGCTGGTGCAGTGTGGGGTGATCCCCAGGCTGGTGGCCATCATGAGGGAGAACCTAGAGAACGACCCACTGGTCAACGTGTGTCTGCTGGCCCTCTGTAACCTGGCCGACATGGACACGACGCGGGAGGCTCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACGGCCCAGCTAAAACTGGCTACTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCACTGGGAGAGAGTGACGTTCTGAAGCTGCAGTTTGTGGAGTCGGGGGTTCCTGAGGCTCTGTCCGAGATGATTCGGGGGCTACAGGGTGGCTCTGACCCCCATGACCTCTGCAGCATCAAGATTGCCTCTAACCTCATCGTTTCCCTCCTGCTGGGAGATGAGTCCATGCAGAAGTGTTTCGGCGAGGGCACGGGTGTGGTGTACCGGGATGTACTCTCTTGGCTGCAGTCCTCCAACACTCAGCTGCAACTGTCTGGAGCCCTGGCCATCGCCAACTTTGCCAGGAACGACAGTAActgtgtgaagatgttggagTTAGGGGTGGTTCCTCATATCCTGACCCTACTGGAGCAGCATGTGGACGAAGGCGACGTGTCCGTCCAACATGCCGGACTGAGTGCGCTCAGAAACCTGGCGATCCCAGCCAGTAATAAGGTGAGGATGCTGGAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTGCTGGGCACCCTGCGCATGATGGTGGATGGACAAGAGGAGGCAGCTGCAGTGCTGGGTAAAGATGAGGTTTTGTTGGCGAGGATCATGGAGTGGTGTGAGGCACGGGACCATGCAGGGGTCAGGGGAGAGGCCAACCGCCTCCTGGCCGCCCTTATTAGACACAGCCGTGCCCCGGAAGTCATCAATGCTGTAACCAAAGCAGATGGGGTGCGACACCTCATCTCCATGGCAACCAGTGAACACTTGATCATGCAGAATGAAGCCCTGGTGGCCCTGGCGATTGCATCTGCCATTGACATCGCCTCCATGCAGGAATCGTTCCGAGAGGCAGAGCTCTTGCCCACACTGCAGAAGATGCTGGATGACCCAGTGGCGACTGTGGAGTTCAAGTTCAGTGCCCTAGGGCTTATCTGTAGCCTGGCCAACTCCAGCTCGATGAAGGAAGAAATGGAATCTCTTAACCTGAAGGAGACGCTCAACAAGCTCTCTGGTCACTCCAGCACCAACGTAGCCACACAGGCCGACACagtgctggccatgctttctgaAACCAGCTAGACTGGCCTGACCGGACCACTGCCCTGGTCAATGTGACCACAGACTCTCAGCACCACGTGCCACCACAACCTCCCCTACTATCGTGACTACACCATTCTCTCCATGAAAAGAAGCAGATATTGAGTCTTCCAAAGCTAGGCCTCCATTCACCTGGTCTATGGAGAGCACAGCTGGACAGAGCTACATTAAGACTGACCAACCCAATATGACAGAGCGCTAACAAGGTGATAGCCTATGTTCTAAGCACAAGCTGAATGAGCCAACCCATGAAAACGCACACGAATCACAACAACCCCAGTTCAGTCCTCATGACCATCTGTAAAAAtagtgtttctgtgtgaaataGCTCTTCTAATCAGTACTCCAATCAATTCAATGTATGTATGATTTCCGATAGCAACCAGTGTATATTATCAAAGGAAACGTTTGCGTATAGGGTTAATCATGGCTACTGTTTCATAGCACCTAATGCGCTTACCCTCAATGGAAAACACAAAACTAACGCCTGACACTGTTTATCCATGTGATGTTCTATCTATACTCTGTATTGACCAATGTCCATGGATGTAAATGTTCCTAGAATAGGACCTGTCTCTTCTCTGTGGATCTTGCATAGTGAGATCCCCTCTGTACTATCTACAGTTTACAGctcaagaaaagcattcaaagcCAATATCTCTGATATTTTACCAAAGTACATTTTAATTAGTGCTAGTTATCTGAGAGCACAGGTGGGTGGGCACTGGGGATAATCATTACAGAGCTGTGAGAGTGTCAGGCACCTCCCCCACTGGTTGCCAGCTCCAAAATTCAGACTGAAAGGGATCAATATGTTATGTTGATGCTGGGCCAGCAAAGGGCTTGTGATGAAGGGAGCTTTAATGTTGCACTCAGAGCCCTGCTGATTCAACTCCTTTTAACACCAATTTGTTAAGGGGTCTTGAGCCCAACAGAGACTGACTGGCTATTTCAAAGGGATTAATAGAGCTAATAGCAACTGAAAAACAgctctccatctgtctttcctTTTAGTACCTAATAGGCTACTCAATGGGAGCTGAgttggtaaattagcttttaaTGTTGAATGAAATTATGAACGAGATTGGTGGGTTTTCTCACTATCTAATCGTGGCATgtggttgttcaatgacagacatgtatttgtttaaaatctataactttttcatttcagagagacacaTAATCATGTTTTTTTGCAAAATGCTAACAAATATGtaacaaataactacatttttaataaagaaatgtACAAATTA

Function

NR:

description
rap1 GTPase-GDP dissociation stimulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984204.1 False 3262 mRNA 0.51 14 70095689 70111416
XM_036984207.1 True 3140 mRNA 0.51 13 70095689 70111417

Neighbor

gene id symbol gene type direction distance location
LOC118965321 LOC106576963 coding downstream 6974 70082835 ~ 70088715 (-)
LOC118965320 LOC106576961 coding downstream 19791 70056552 ~ 70075898 (-)
LOC110528384 LOC106576958 coding downstream 59157 70030045 ~ 70036532 (-)
LOC110528376 LOC106576957 coding downstream 73286 69993128 ~ 70022403 (-)
LOC110528285 NA coding downstream 526535 69566181 ~ 69569154 (-)
camk2g2 LOC106576966 coding upstream 293923 70405340 ~ 70512273 (-)
si:dkey-174i8.1 LOC106576967 coding upstream 411493 70522910 ~ 70526933 (-)
cgas mb21d1 coding upstream 599457 70710874 ~ 70713631 (-)
eef1a1a LOC106576970 coding upstream 603206 70714623 ~ 70729159 (-)
slc17a5 slc17a5 coding upstream 622438 70733855 ~ 70745693 (-)
G78237 NA non-coding downstream 15233 70080058 ~ 70080456 (-)
G78233 NA non-coding downstream 22413 70073074 ~ 70073276 (-)
G78231 NA non-coding downstream 24489 70070736 ~ 70071200 (-)
G78209 NA non-coding downstream 39202 70054698 ~ 70056487 (-)
G78219 NA non-coding downstream 41412 70053954 ~ 70054277 (-)
G78301 LOC106576964 non-coding upstream 75264 70186681 ~ 70188815 (-)
G78313 NA non-coding upstream 96151 70207568 ~ 70209802 (-)
G78318 NA non-coding upstream 122129 70233546 ~ 70233762 (-)
G78321 NA non-coding upstream 126928 70238345 ~ 70238672 (-)
G78322 NA non-coding upstream 129482 70240899 ~ 70241162 (-)
LOC110527951 coda1 other downstream 1405460 68575379 ~ 68690343 (-)
G75682 NA other downstream 1883983 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1933687 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2413959 67669589 ~ 67681775 (-)
G78414 NA other upstream 243499 70354916 ~ 70355591 (-)
G79616 NA other upstream 1210533 71321950 ~ 71386523 (-)
G79700 NA other upstream 1358265 71469435 ~ 71470755 (-)
G79904 NA other upstream 1631628 71743045 ~ 71743809 (-)
G80957 NA other upstream 2096512 72207929 ~ 72211089 (-)

Expression


Co-expression Network