eef1a1a (LOC106576970)


Basic Information

Item Value
gene id eef1a1a
gene name LOC106576970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70714623 ~ 70729159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610662.2
ACGAACGATCTCGGAAGGGGTATGAGCATTGAACGCAATTGCGTAACCCCCTCCTGTCTGCGATAAACGGATCAGCATCTCGTCACAGTCTCATTCAGCACCGGACTTGACTCATTCGTTTGCGCAGACTCTCTCACTGTCACTTTAACCAGTCAGCCATGGGCAAGGAGAAGCTCCACATCAACATTGTGGTGATCGGCCACGTGGACTCTGGCAAGTCCACCACCACTGGCCACCTGATCTACAAGTGCGGTGGCATTGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGATGGGGAAGGGCTCCTTTAAGTATGCCTGGGTGCTGGACAAGCTGAAGGCAGAGAGGGAGCGTGGCATCACCATTGACATCTCACTGTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATTATCGACGCCCCCGGACACAGGGACTTCATCAAGAACATGATCACTGGAACCTCCCAGGCAGACTGTGCCGTGCTGATTGTGGCAGCCGGTGTGGGTGAATTCGAGGCCGGCATCTCAAAGAACGGGCAGACCCGCGAGCACGCCCTCCTGGCCTACACCCTGGGGGTCAAGCAGCTGATCGTGGGCATCAACAAGATGGACTCCACTGAGCCCAACTACAGCCAGAAGCGTTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCGGATACGGTAGCCTTTGTTCCCATCTCTGGCTGGAACGGAGACAACATGCTGGAGGCCAGTCCTAATATGACCTGGTTTAAGGGATGGAAGATCACCAGGAAGGATGGCAGTTCGTCCGGGACCACCCTGCTGGAAGCTCTGGATGCTATTCAGCCCCCGTCCCGCCCCACCGACAAGCCCCTCCGCCTACCCCTGCAGGATGTCTACAAGATTGGAGGTATTGGCACAGTGCCTGTGGGTCGTGTGGAGACGGGCATGATCAAGCCAGGCATGGTGGTGACCTTTGCCCCTGTTAATGTGACCACTGAGGTGAAGTCTGTTGAGATGCACCACGAGGCCCTGACCGAAGCAATGCCCGGTGACAACGTGGGCTTCAACGTCAAGAATGTGTCCGTCAAGGACATTCGCCGTGGCAATGTGGCCGGAGACAGCAAGAACGACCCCCCGATGGAGGCAGCAGTCTTCACTGCTCAGGTGATCATCCTGAACCACCCAGGTCAGATCAGTGCTGGCTATGCCCCAGTGCTGGACTGCCACACTGCCCACATCGCCTGCAAGTTTGCTGAGCTCAAGGAGAAGATTGACCGTCGCTCAGGCAAGAAGCTGGAGGACAACCCAAAGGCTCTGAAGTCTGGAGACGCCGCCATTGTGGACATGGTCCCGGGAAAGCCCATGTGTGTGGAGAGCTTCTCAGAGTACCCTCCACTGGGTCGTTTTGCAGTGCGTGACATGCGCCAGACTGTGGCAGTCGGGGTGATCAAGGCTGTTGAGAAGAAAGCCCCCTCCACTGGTAAGGTCACCAAGTCTGCCCAAAAGGCCCAGAAGACCAAATGAATGTTGTGCTGTGCTGCTGACTCAAGAGTCACCCATAGCAGGACAGTAGTCACCCAACTCCACCCCCCTATCGGCTGCTGCAACTCCATAGTCAAAGACTGGTTAATAATCACAATGCATCGCAAAAGTATCagaaggaaagaaacaaataTTAAGCCTAGTCCTTAAGACAGTGTTTGTTCCCCCTCTCATTTCAAAGTGGTTAGATTCATGTGTATTTATTTACGTTGTAATAGCACATTGCTAGTTTTAAACGTGTactgttaaatatgtgaatgaCCATGTTCCCCATGTGTGAGATATTGTAACCATAGAGGGGTGTGTAAACTGCCACCCCCTTCCTCTCTGTACTGCAGTTATGTCACTCTTCACGTGGTCTGTTGTCTTGcttttagtgtttgtaaactaaCTGGTGCTTTATAGTAGCCTTTGGTAATTAACTCTTACAAGTAGAAAAATATTTCTCTAAAgtgtatgttgtgttatatatatatattgttgtaCTCTAggcacactgagtataccaataGTTGACTCTCCAAGCACTTTTAATTGGCATTTTGCTATCTTTGCACTGGAAAACATAATTGGCAGAAGCTGTTGCACCTTACTCTGTTCGAGATGGCACAAGACTCGTCATGACATTAAAAGATAATTTAACCAACCA

Function

NR:

description
elongation factor 1-alpha, somatic form

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610662.2 True 2214 mRNA 0.51 8 70714623 70729159

Neighbor

gene id symbol gene type direction distance location
cgas mb21d1 coding downstream 992 70710874 ~ 70713631 (-)
si:dkey-174i8.1 LOC106576967 coding downstream 187690 70522910 ~ 70526933 (-)
camk2g2 LOC106576966 coding downstream 202350 70405340 ~ 70512273 (-)
LOC110528401 LOC106576963 coding downstream 603206 70095689 ~ 70111417 (-)
LOC118965321 LOC106576963 coding downstream 625908 70082835 ~ 70088715 (-)
slc17a5 slc17a5 coding upstream 4696 70733855 ~ 70745693 (-)
LOC110521978 LOC106576971 coding upstream 31576 70760735 ~ 70766495 (-)
LOC118966765 NA coding upstream 36192 70765351 ~ 70765482 (-)
rin2 LOC106576973 coding upstream 42876 70772035 ~ 70840706 (-)
si:dkey-187a12.4 LOC106576974 coding upstream 122763 70851922 ~ 70857768 (-)
G78558 NA non-coding downstream 60659 70646124 ~ 70653964 (-)
G78419 NA non-coding downstream 355901 70358503 ~ 70358722 (-)
G78415 NA non-coding downstream 358136 70356274 ~ 70356487 (-)
G78412 NA non-coding downstream 360752 70353429 ~ 70353871 (-)
G78409 NA non-coding downstream 366520 70347584 ~ 70348103 (-)
G78807 NA non-coding upstream 3192 70732351 ~ 70743072 (-)
G78855 NA non-coding upstream 93982 70823141 ~ 70877036 (-)
G78874 NA non-coding upstream 119537 70848696 ~ 70849537 (-)
G78910 NA non-coding upstream 171656 70900815 ~ 70902212 (-)
G78995 NA non-coding upstream 273158 71002317 ~ 71002542 (-)
G78414 NA other downstream 359032 70354916 ~ 70355591 (-)
LOC110527951 coda1 other downstream 2024394 68575379 ~ 68690343 (-)
G75682 NA other downstream 2502917 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2552621 68157900 ~ 68162024 (-)
G79616 NA other upstream 592791 71321950 ~ 71386523 (-)
G79700 NA other upstream 740523 71469435 ~ 71470755 (-)
G79904 NA other upstream 1013886 71743045 ~ 71743809 (-)
G80957 NA other upstream 1478770 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1519445 72202814 ~ 72251918 (-)

Expression


Co-expression Network