slc17a5 (slc17a5)


Basic Information

Item Value
gene id slc17a5
gene name slc17a5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70733855 ~ 70745693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610675.2
AAAGAAGGAGAAATGGACCTCACACCGGTTCCTTTCCAAACTTCCGTTCACAGTTCTCGTGATTCAATTGTTCATATAGCTAGCTCAGTTCATTCAATTCTAACTGCAGGTATGGCATCTCAAAACATTGAACTCTGATGTGCAATGGACCGATATATATCGGACACGGAGACCGATGACCAAGAACAACCGTTGTTGCTCAGTCGACAAGATGATAAAGTCGAAAGAGcccctgCGTGCTGCTCTTCGAGGTACGGTCTGTCCCTGCTCTCCTGTTATGGTTTCTTTGTGGCCTATGCCCTTAGGGTCAACCTCAGCGTTGCCATGGTGGACATGCTTAACAACACAGACGCCAGCGGCAACACCAGCAAATCAGTATGTCCTGCACACTCCAGCCCTGCTCGCCCCATATACAACCACACTGCCAGTGTGTATGACTGGGACTCTGAGACCCAAGGCTGGATCCTGGGCTCCTTCTTCTACGGCTACATCCTGACTCAGATCCCAGGGGGCTACCTGGCACGCAAGTATGGGGCCAAATGGCTACTGGGCCTAGGAATCCTGGGAACTGTGGTTTTCACCCTCCTCACCCCCATGGCTGCCGACCTGGGTGCAGGCTACCTTATCGCTGTCAGAGTGCTGGAGGGTATTggagagGGAGTGACGTTTCCAGCCATGCACGCCATGTGGGCATTTTGGGCCCCACCAATGGAGAGGAGCCGATTGCTCACCATCGCTTACACTGGTGCTCAGCTGGGTACAGTGGTTGCCCTTCCCCTATCTGCTCAGATCTGCTTCTACCTTGACTGGACCTGGGTCTTCTATATCTTTGgtattGTGGGAATTGTGTGGTTCATCCTGTGGgcgctccttgtcagtaacactCCCAGCACACACCCGCGGATCACAGAACAGGAGCGACTCTACATCACTTCCTCCCTGAATAAGGAGCTCACTTTGTCGGGTGACCACATCCCCTGGGGGTCCATCTTGACATCCATGCCGCTGTGGGCCATAGTAGTGGCTCACTTCTCCTACAACTGGACATTCTACACACTACTCACTTTGCTGCCCACATACATGAGTGATGTATTGGGCTTCAGCATCAAAGAGAACGGTGCGCTGTCGGCTCTGCCCTACATTGGCTGTGGGCTGCTGGCCGTGCTGGGTGGCCAGCTGGCTGACTACCTGAGGGAGAACTGCTTCTACCGGACTGTGGTTGTCAGGAAGGCCTTCAGTCTCGTAGGTATGATTGGGCCGGCAGTGTTCATTGTGGCTGCTGGGTATACAGGCTGTAACTACATCCTGGCAGTAGCCTTcctttccatctcttcctccctgggAGGAATCGTTGCCTCCGGGTTCAACATCAACCATCTCGACATCGCTCCATCTTATGCTGGGATTTTGTTGGGAATCACCAACTCCTTTGCCACAATACCTGGTATGGTGGGACCAGTCATAGCAAGAGCCTTGACCAAAAATAACACTATAGAGGAGTGGCAGACAGTGTTCTACATCTCTGCTGGGATCAACCTGTTTGGAGCGGTTTTCTACACGGTGTTTGGTCAAGGCGTGGTGCAACCCTGGGCTGTCCACAATCCCCATTCCCATGGCAACTGAGGGGGACAAAGGGTGACACCCTGTGGACCAAAATGGACTCGCAGCCATGGGACCGTTTCAACCAAGCTATTCTACACACAACCCTAGTGGGGAAACAGCCTTCTAAAGTAACTTCTAATATTTTAATGTTTTTAGTTTTGGTAAGTGGACCCAATAATGGGTATAtgtgcattttttaaaaatcaattaCAATTTTAGTCTTTGTGTAGGCTCTTGTGATATAACCACATTTAGTGTTTTACTTTGTTTACAGGTAAGAGTTTGCTTGTTTTTAAATTCCTTTACATTTCAAGTCTTACATGAACTGACATCAGACAAGTAGCATTTCCATTTTGTCATTTGTTTCTCCTCTGTTAGATGCTCAGGAGAAAAAAAAGCCATATAAATTAAAGTTTTTGTATGTAGCAGAGTTATTGCCAACTGAAAGAGCACAGTCACCCAGGATAGAATCCATGTGGGTTTCTCTACTTGTgagaaacttgttttttttttgtccttcCGCTTGTGCCTAAAGTAGAGAACTATGATCATCAACCCAGTATATCTCATCTAATCAATACAGGTGACAGAGTACTGATAAACAGCCGTATTCCCTGTGTAAATGTGTCTACCATCCAAATCTGtcttaatttatttttttttactgatcAGTTATGTTTACTTGCTGAACCAACTACAATGAAGGAGTTTTAAAGGG

Function

symbol description
slc17a5 Predicted to enable sialic acid transmembrane transporter activity. Predicted to be involved in sialic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in lysosome. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; polster; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sialuria. Orthologous to human SLC17A5 (solute carrier family 17 member 5).

NR:

description
sialin

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610675.2 True 2320 mRNA 0.48 11 70733855 70745693

Neighbor

gene id symbol gene type direction distance location
eef1a1a LOC106576970 coding downstream 4696 70714623 ~ 70729159 (-)
cgas mb21d1 coding downstream 20224 70710874 ~ 70713631 (-)
si:dkey-174i8.1 LOC106576967 coding downstream 206922 70522910 ~ 70526933 (-)
camk2g2 LOC106576966 coding downstream 221582 70405340 ~ 70512273 (-)
LOC110528401 LOC106576963 coding downstream 622438 70095689 ~ 70111417 (-)
LOC110521978 LOC106576971 coding upstream 15042 70760735 ~ 70766495 (-)
LOC118966765 NA coding upstream 19658 70765351 ~ 70765482 (-)
rin2 LOC106576973 coding upstream 26342 70772035 ~ 70840706 (-)
si:dkey-187a12.4 LOC106576974 coding upstream 106229 70851922 ~ 70857768 (-)
slc24a3 LOC106576975 coding upstream 117420 70863113 ~ 70961979 (-)
G78558 NA non-coding downstream 79891 70646124 ~ 70653964 (-)
G78419 NA non-coding downstream 375133 70358503 ~ 70358722 (-)
G78415 NA non-coding downstream 377368 70356274 ~ 70356487 (-)
G78412 NA non-coding downstream 379984 70353429 ~ 70353871 (-)
G78409 NA non-coding downstream 385752 70347584 ~ 70348103 (-)
G78855 NA non-coding upstream 77448 70823141 ~ 70877036 (-)
G78874 NA non-coding upstream 103003 70848696 ~ 70849537 (-)
G78910 NA non-coding upstream 155122 70900815 ~ 70902212 (-)
G78995 NA non-coding upstream 256624 71002317 ~ 71002542 (-)
G79423 NA non-coding upstream 273886 71019579 ~ 71019802 (-)
G78414 NA other downstream 378264 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 645141 70082835 ~ 70088715 (-)
LOC110527951 coda1 other downstream 2043626 68575379 ~ 68690343 (-)
G75682 NA other downstream 2522149 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2571853 68157900 ~ 68162024 (-)
G79616 NA other upstream 576257 71321950 ~ 71386523 (-)
G79700 NA other upstream 723989 71469435 ~ 71470755 (-)
G79904 NA other upstream 997352 71743045 ~ 71743809 (-)
G80957 NA other upstream 1462236 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1502911 72202814 ~ 72251918 (-)

Expression


Co-expression Network