rin2 (LOC106576973)


Basic Information

Item Value
gene id rin2
gene name LOC106576973
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70772035 ~ 70840706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610686.2
AAACTCCTTATCCTGCCACTCCGTCGGGCTTTTGTTTTGTTCTCCAGACGTTGATGCCTGGGGAGGTCGTTTGCGCGGTGGATGAAGGAAAGAAAATGGAAAGGCACTAGGGCAAATCTTGGACGGAGCCGACTCGGGAAAGGAGCGGAGCCCAACTTTCTACGATGAACTACACCGTAATTTCAATGACACAGAAATAACTTTTCATTTATATTTTACTACATAATGATAGGCTATTATATAAGCCTACATACAGCAGGGTTGTCGGTTTAGGAGCTCAATTCTGCCGACTGGGCGTGCACCTATGAAAGAGaaacaaacacaggcACGACGAAGGACAGGAGGATAGCATGTCAACAAGCACACTCATCCAACCCAGCCTCAGGGAGAAGAAAGGGAGCTTCTTCAAGCTGATCGACTCATTTGCCTGGGAGATCGGGACTCTGAAGAGGGAGGTGGTGCAGAAGGCTGAGCCAGCAGAGAGGGACCCAGAGCCTGTCATACTAcaggggctgGATGGGGAAGTGGGAGGTCTGTTCCTACAGGCTCCTCCCTGTGTTGGTGTGGGGGCACGGCTGGCTGGAGCTAGAGATTCAGGCTACGACTCGTTGCGTAGAAGGATGAGTGTGCTGGACAGGCTGGTGCAGACGCACGTTGTGTGGCTGCAGCTGGGACTTAACCATGCAGACTCCACAAGCATACTGGAACCGCAGCCCACCGGGACGTTTCTGGTGAGGAAGTCGACTACCCTGCAGAGGAAGGTGATCTCTCTGCGTATGCATCAGGACTCTGAGACACCCGTCAAAGACTTCCCTGTGAAGGAGAGTCAATACACATTCTCCTTGGAGGGATCGGGCCTCGGCTTCGCAGACCTGTTCCGTCTTGTGGCCTTCTGCTGCATcagcagGGATGTCTTGCCATTCACCCTAAAGCTTCCTGAAGCCATCTCTGCAGCCAGGACACCAACAGACTTGGAGGAGGTGGCCAAGCTAGGAGCAGGCTTCTGGGACTCTGAGCATTGCTGCAGGAGCAAGAGTTCTGTCTCCCGGTTGTCCGGGACAACCATCCAGGACCAATCACTCAGCCCCCTGGTCACCCGCACCCCGTCCCAGCTTGAGTGTTCCCAGTCCAACGGGGCTCTCTGCTTCATCAACCCCCTCTTCCTGAAGGTTCACGATCCAGAGGGGGGCAAccacacccctccctcctccaccagcTACTACAACAACCCCCACCACCTAAACAACAATagtactacaacaactacagcaaCAACAGTACAAGTTCAACAGCACTGTATCAGCAACCCAGAGCAACTTATCGACTGCACAAACAGCCCTCAACCCCCTAGCAACAGCCCTCAGAGTCCTAGCCCTGGCAACAGCCCCCAGCATTATAACAACAGTGTGAGCCAGGCTAAGAGCGTGTCCCGCCCACCACCGCCTCGCCCCCCACCTCCCCATTGTGCTCCCCGTCGCCCTGCCCCTCCTCGACGCCAGTGCAGCATGCCTGAGAAGATATCCTGGATCAACCCCCCCAAAGAGAAGgacagggtgggagagagggagaaaggaggagaaagagagaagggcagTAGCCTTCTCTCCCGCCTGGGCTCCTCTCTCAGCATCAGTCCATCCTCTTCTTTCCTCTTATCCTCCCCTCCTAAGAAGCTCAGCATCAGTGCCCCCATCTCTATTCCCTTGTCCCTTTCCTCCCCAAGTAGACCGAAACCCACGCCGCCAAGCGACGTCGACTGCCATCTTGCTCTCGATGACCAGACTATTGAGAACGCCATTTCTCTCAGTCTGGCTAAGCTGTCACTGAGAAACGCCACCACCCCTGACGACAACACAGAGGGAAACAGTCCGTCCACTCAAGACCCAGCCCCCTCCCGtcgagaggaaggaggaagagaaagaggaggaagaggggacagTGTGCAGCGCCTGAGCGACATGAGCCTTTCCACCGAATCCTCTGCCGACTCACTAGACTTTTCCCAGGGCTTTTTCCCCCCGCTCTCTGAACCCAGCCCCCCCACCACCAACAACCTGGTCCTGCCCCCCCTCACCCACCCCTACAGCAGCATGGAGGAAGACGATGATGATGAAGACGAAGCAGACTTCGGCGGGAGCCTGGAGAGCGACCAAGACCAGGACCTGACCATCACCCCTCCTGGGCTGCGCACCAAACGGCGAGCCAGCGCCGGGGCCATGGTCATCCAGCGGGCCCTCAGGGGCCACCTCCGTAAAATGAGTGGGGTGTTCAACTCGCTGATGACCCCAGAGAAACGGGCCATACGGAGAGTCCTGGAGCTGTCGAGGGACAAGGGGTCTTACTTCGGCTGCCTGGTGCAGGACTACCTGAGCTTCCTGCAGGAGGGAGGCGGCAGCCAGGCCTGGCAGTGCCACGCATCAGGACTGGAGTTGCTGCAGACGCTACGCCAGTTCATCACCCAGATGAAGAGCTACCTGCGGCAGAGCTCTGAGCTGGAGCCCCCCATCGAGTCACTCATCCCAGAGGACCAGATCGACTATGTCCTAGAGAAGGCCATGCATAAGATTGTCCTGAAGCCCCTAAAAGGTGTGGTGGGAGTGGCCCTCCAGGAGTTCCAGGTCCGCAGTGGGGCGTGGCAGGAGCTTAAGGAGAACCTCTCATTGGCCAAGGTCCGGCAGCCCCAGGAAATGGGCGTGACCGACGCACTCCCTCCAGATCCAGTCGCCATAGAGAAGATCCGGCACAAGTTTCACACCATGTGTAAACTCTACTCCCCTGAGAAGAAGGTGACCATGCTGCTGCGTGTGTGTAAACTCATCTATACCATCATGGAGGACAACTCAGgtcgTCTGTACGGGGCAGATGACTTCCTGCCCATGCTGACCTATGTGTTGGCCCAGTGTGACATGCCTCAACTAGATAACGAGATCCTCTACATGATGGAACTGCTGGACCCCTCTCTGCTCAATGGAGaagGTGGATACTACCTGACCAGTGCGTACGGAGCCATGTCCCTCATTAGGAACTTCCAAGAGGAGCAAGCAGCTCGTGTACTCAGTTCTGAAACACGCAACACACTCCACCAGTGGCACCGTCGCCGCACCACCCAGCGCACTGCGCCCTCTGTAGACGACtttcagAACTACCTGCGAGTGGCGCTCCAGGAGCTGGACAGCGGCTGCACGGCCAAAACCCTGCAGGTGCAGCCCTACGCCACCACAGAGGAAGTCTGCCAGATCTGTGCCTACAAATTCAAAGTTCCCGACCCTGAGGATTATGCTCTGTTCCTGCTCACTGAGGGCTCGAGCCAGCAGCTAGCCCTTGACACATACCCCCAGAAGATCAAAGCTGAGCTCCACAGTCGACCCCAGGCCGCACCTTTTCACTTCGTCTTCCGTCGCGTGGCTAACCTCAATGAACTGGACGTGACCTCTTTTGACCCCCAGTCCATCCTCAATGACGTCACCCTTACCACGGACTCTGAGCCCAATCACAATGATGTAGCCTTAACCCCTTCGGACCCCGAGCCCAACTTCAACCTTggtctcagtcccagtctcagcctcaGTCTACCCCCCAACCAGCAAAATGGCAACTCCATATCTATCTGAGGCTGCAGGGCTGGAAACCCTCCATCTGGACATTCTTTCTGTAACCCAACAAAACTGATCTGAGCTGTGTTTAACTGGATTGAACTGGGTCTAACTGGGTTAAGCTGAGCCATGCTGAGTTTAGCCAAAACAAACTTCCCCTTTTGGTGAATCTACTGTCTAGCAGGGCGTCCTCAAAGCGGAAAGCTTTGTCTAAGTACAGGAGGAAAGTAGAGGAAAAGGGAAGGAAATGTGACAGATGGGGTTATTTTGCAGCTCTATTTGTGAACCTTTGGGACATGGCACTCAAGGAGCACACGTGAGGGCAAACGCCACTCACATAAAGGATGGATAAAAGCTTTGAAATAGTCTtgttacagacacagacagaccatcTATACGGTCATACTGCAAAAGTGTCTGAAAGTTCAGATTCAGGGTCAGTTTTTGGTTTGTAACTCCTAGTGGTGAAGCAAAGGATAAGTCGAGGGAAAGCTGATCTCAGATCTGTGGATAGGGGTAACTTTTGTCTGCAATGGTTCCATCTAGTGATGTACTCATTCTGTCCATTCACTTTTTCTTCAGACAGAATATAGCCTTTATAGCAAATATACAGCATTTACTTTATCTGGGTGATAGCCTACATCTATTATGAATTACTTGTTGCAGTTGCTGGTAAAATTGCAGGATATGTATTTTTATGGAATATTGTTTTATCATTGCATGTTCTTTTCTTTGTTAAATGTTAGAAGAGGGCATGTCTGCCAGTGACAAAATAATGAACGTCCTTAATGTTATGATTATCCAGGAGATATGATACTGTACATCCCTCATAGCTAATCCTTAGTTAATAGAGGTCATTGCTGTCATAGTGATTGTGTGATATATGATTGACTGGCTTGGTCTACAGTACCGGCGTCAAATCCCAGACAAGGTCATGAAATATTGTACTACTGACAAATATTAAAAGTAGGCCTAGATTGCCTTATGAAATTTGGTGTGTCAATTCTCAAGCTGGTCTgagattatacacacacacacacacatgcacaaacttGTGTGTTTTGGCTCTTGGCTGGTAAGATTTTGAGCATTGGGTATGAGGGCATAAGAGATTTGAAAGGATGCAGATTtgagaaaaaataagaaacctgcacactgctcttgctaggtATCACTGCTCTTTTTTTAAGCTTTGACAaaggccttgaggtcgatacgtaaaggttaataaagagcagtgatactagcaagtgCAATGTGCAGGTTTCTTTTTCgattgttaccatgcacctgcaacaaagaTAGCTAAGATGTGTGCCTTTTGACACAGATTTAAAAGACGGAGAGCGAAAATAATGAGATGTGAGGTAGAACTGAATCATTAATAAAATAAGGCTCTAATGTTTCATTAACTGAACACAAATCATGTTTAAACAAATTGCAGTCTATTAATGTATCAGTACTTCAATGTTTACCATTTGAAATGTAGAGTTGGGCATTGCTGGTGCTGTAGAACGATAACAGAAAAGTGAAATGGTAAATGTGATTGAGGAAAGGTTGAGGAGGCAATAGCATTATTGTTAAACACTATGTAGCTTATAATGTTAGTTAAATATATTGAAATATATTTAAACTTTTTTGGGACTTAGGTGTTATcctgttttaaatgtacttataCTGTAATACAATTGCTACTCTAACAAGATTTTTAATGATACACATTTTTGTATTTATATGTATCTGTGCTGGGATTTTTTCACAGATTGCAATATAACATATGGAAAAAGCATTCTTCCAAGATCAACAAGAAATGTACTTATGTTCCTATGCTAAAGACTCTCTGTACGTATCATTGAATGATATTATTTTGCACTCAATAAATTTTGGTCATGAATTTGACTGTG

Function

NR:

description
ras and Rab interactor 2-like isoform X1

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610686.2 True 5497 mRNA 0.50 12 70772035 70840706

Neighbor

gene id symbol gene type direction distance location
LOC110521978 LOC106576971 coding downstream 5540 70760735 ~ 70766495 (-)
LOC118966765 NA coding downstream 6553 70765351 ~ 70765482 (-)
slc17a5 slc17a5 coding downstream 26342 70733855 ~ 70745693 (-)
eef1a1a LOC106576970 coding downstream 42876 70714623 ~ 70729159 (-)
cgas mb21d1 coding downstream 58404 70710874 ~ 70713631 (-)
si:dkey-187a12.4 LOC106576974 coding upstream 11216 70851922 ~ 70857768 (-)
slc24a3 LOC106576975 coding upstream 22407 70863113 ~ 70961979 (-)
soul2 LOC106576976 coding upstream 179777 71020483 ~ 71023873 (-)
LOC110532621 LOC106577071 coding upstream 270144 71110850 ~ 71113278 (-)
fancl fancl coding upstream 424257 71263171 ~ 71282788 (-)
G78807 NA non-coding downstream 28963 70732351 ~ 70743072 (-)
G78558 NA non-coding downstream 118071 70646124 ~ 70653964 (-)
G78419 NA non-coding downstream 413313 70358503 ~ 70358722 (-)
G78415 NA non-coding downstream 415548 70356274 ~ 70356487 (-)
G78412 NA non-coding downstream 418164 70353429 ~ 70353871 (-)
G78874 NA non-coding upstream 7990 70848696 ~ 70849537 (-)
G78910 NA non-coding upstream 60109 70900815 ~ 70902212 (-)
G78995 NA non-coding upstream 161611 71002317 ~ 71002542 (-)
G79423 NA non-coding upstream 178873 71019579 ~ 71019802 (-)
G79432 NA non-coding upstream 192230 71032936 ~ 71033152 (-)
G78414 NA other downstream 416444 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 683321 70082835 ~ 70088715 (-)
LOC110527951 coda1 other downstream 2081806 68575379 ~ 68690343 (-)
G75682 NA other downstream 2560329 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2610033 68157900 ~ 68162024 (-)
G79616 NA other upstream 481244 71321950 ~ 71386523 (-)
G79700 NA other upstream 628976 71469435 ~ 71470755 (-)
G79904 NA other upstream 902339 71743045 ~ 71743809 (-)
G80957 NA other upstream 1367223 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1407898 72202814 ~ 72251918 (-)

Expression


Co-expression Network