si:dkey-187a12.4 (LOC106576974)


Basic Information

Item Value
gene id si:dkey-187a12.4
gene name LOC106576974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70851922 ~ 70857768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610706.2
GGGCGCCCGGGTAGGATGAATCGAGCTCCCTCAATGTTCTCGCAACATTACTGTGACGTTGTTGCAACGTGATATCGTGCTATGGCTGTGGACTGTTTGATAACCACTTCCGTTTTCCCCTCACTAGTCCACATTTGCGTTTACCTTGAACGATAGAAAGACATTGTAGAAAGGTTTTTGTTGGTTTAAACTAACGTTGAGGAGGTCGACTGTTTGAGGAATTTTATGGAGCATAATAATGGAGATACTTCTAGCTGGGCGATGCAGCGACGTATGGAAGGTTTGGTCAACAAACACATGGCAGACATAGCTCTTGAAACACTCCAGCAGAGACTTTCAGCTGTGTCCGACGAAATGAACAATCTTGCGGAACATGTCTCGAGACGCTCGGAGGATATTCCCAAAGATGATATTTCAAGACGACCTGATGTCAACTTTGACGTTGAGTCCCTGAGTGCGACGTTTAGCACGGGTGGTGTTGGGGAAAAGTTGTTGATGCCAGGTACCTCGTCATCAGCAGAGACAGCTGCCCAGCGTAAAATAATCTCCTTGCTGGTGGAGATCAAGGAGGAGCAGCAGAGACAGTGGGCAGTGTTGAGGGAGCTGCAGGCCAGGGTTCAGGGCCAGAGCTTTacggaggtagaggaggaggtggaggctcTAGACATCGACATCCCGCTGAGGACCATGGAGCAGCTAGATGACACAGAGAGGCACCTGGAGGATGCCGGAGCACAGAAGAGAATGgtGTCTCACCTGTCACGGATGGGCGGGGCCACAGTGGATGATGCAGTGCGAAGGCTCATGCAGGCTGTGCTATCTTTTGCTGTGGGCTCTGAGCTCAACTGGGTGGGCCGCGGCCAGAAAAGGAGCTTCAGAAACACCCGCCTCCAAGGGGTTCTCTTCCGTGCTCTGAAAAGAACCCCTGTGGGCAAAGAGGCCACACATCATCAGTTTGCAGACGTGGTGAAGAAATGGCTGCGGTACACACCGttcagacagggagggagtggtCGACGACTTTACAAACCACCTGTCGAGTTCCTGTGTCCAAATGAATGTGTAGGTCTGCCTACACATCTGCCTACACATCCACAGTAACGCTCAACCAGCTTACCGTAAAACTTCAATTACATAGCCCGTGCATTTATTTGCttaaatcactgaacacaacagg
>XM_036984496.1
TGCAATCAACTTTCAGCCGCTGCACGGGCGCCCGGGTAGGATGAATCGAGCTCCCTCAATGTTCTCGCAACATTACTGTGACGTTGTTGCAACGTGATATCGTGCTATGGCTGTGGACTGTTTGATAACCACTTCCGTTTTCCCCTCACTAGTCCACATTTGCGTTTACCTTGAACGATAGAAAGACATTGTAGAAAGGTTTTTGTTGGTTTAAACTAACGTTGAGGAGGTCGACTGTTTGAGGAATTTTATGGAGCATAATAATGGAGATACTTCTAGCTGGGCGATGCAGCGACGTATGGAAGGTTTGGTCAACAAACACATGGCAGACATAGCTCTTGAAACACTCCAGCAGAGACTTTCAGCTGTGTCCGACGAAATGAACAATCTTGCGGAACATGTCTCGAGACGCTCGGAGGATATTCCCAAAGATGATATTTCAAGACGACCTGATGTCAACTTTGACGTTGAGTCCCTGAGTGCGACGTTTAGCACGGGTGGTGTTGGGGAAAAGTTGTTGATGCCAGGTACCTCGTCATCAGCAGCTGCCCAGCGTAAAATAATCTCCTTGCTGGTGGAGATCAAGGAGGAGCAGCAGAGACAGTGGGCAGTGTTGAGGGAGCTGCAGGCCAGGGTTCAGGGCCAGAGCTTTacggaggtagaggaggaggtggaggctcTAGACATCGACATCCCGCTGAGGACCATGGAGCAGCTAGATGACACAGAGAGGCACCTGGAGGATGCCGGAGCACAGAAGAGAATGgtGTCTCACCTGTCACGGATGGGCGGGGCCACAGTGGATGATGCAGTGCGAAGGCTCATGCAGGCTGTGCTATCTTTTGCTGTGGGCTCTGAGCTCAACTGGGTGGGCCGCGGCCAGAAAAGGAGCTTCAGAAACACCCGCCTCCAAGGGGTTCTCTTCCGTGCTCTGAAAAGAACCCCTGTGGGCAAAGAGGCCACACATCATCAGTTTGCAGACGTGGTGAAGAAATGGCTGCGGTACACACCGttcagacagggagggagtggtCGACGACTTTACAAACCACCTGTCGAGTTCCTGTGTCCAAATGAATGTGTAGGTCTGCCTACACATCTGCCTACACATCCACAGTAACGCTCAACCAGCTTACCGTAAAACTTCAATTACATAGCCCGTGCATTTATTTGCttaaatcactgaacacaacagg

Function

NR:

description
uncharacterized protein LOC109888787

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610706.2 False 1177 mRNA 0.51 4 70851922 70857743
XM_036984496.1 True 1196 mRNA 0.51 4 70851922 70857768

Neighbor

gene id symbol gene type direction distance location
rin2 LOC106576973 coding downstream 11216 70772035 ~ 70840706 (-)
LOC110521978 LOC106576971 coding downstream 85427 70760735 ~ 70766495 (-)
LOC118966765 NA coding downstream 86440 70765351 ~ 70765482 (-)
slc17a5 slc17a5 coding downstream 106229 70733855 ~ 70745693 (-)
eef1a1a LOC106576970 coding downstream 122763 70714623 ~ 70729159 (-)
slc24a3 LOC106576975 coding upstream 5345 70863113 ~ 70961979 (-)
soul2 LOC106576976 coding upstream 162715 71020483 ~ 71023873 (-)
LOC110532621 LOC106577071 coding upstream 253082 71110850 ~ 71113278 (-)
fancl fancl coding upstream 407195 71263171 ~ 71282788 (-)
LOC110532628 NA coding upstream 818263 71676031 ~ 71683123 (-)
G78874 NA non-coding downstream 2385 70848696 ~ 70849537 (-)
G78807 NA non-coding downstream 108850 70732351 ~ 70743072 (-)
G78558 NA non-coding downstream 197958 70646124 ~ 70653964 (-)
G78419 NA non-coding downstream 493200 70358503 ~ 70358722 (-)
G78415 NA non-coding downstream 495435 70356274 ~ 70356487 (-)
G78910 NA non-coding upstream 43047 70900815 ~ 70902212 (-)
G78995 NA non-coding upstream 144549 71002317 ~ 71002542 (-)
G79423 NA non-coding upstream 161811 71019579 ~ 71019802 (-)
G79432 NA non-coding upstream 175168 71032936 ~ 71033152 (-)
G79463 NA non-coding upstream 222493 71080261 ~ 71080561 (-)
G78414 NA other downstream 496331 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 763208 70082835 ~ 70088715 (-)
LOC110527951 coda1 other downstream 2161693 68575379 ~ 68690343 (-)
G75682 NA other downstream 2640216 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2689920 68157900 ~ 68162024 (-)
G79616 NA other upstream 464182 71321950 ~ 71386523 (-)
G79700 NA other upstream 611914 71469435 ~ 71470755 (-)
G79904 NA other upstream 885277 71743045 ~ 71743809 (-)
G80957 NA other upstream 1350161 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1390836 72202814 ~ 72251918 (-)

Expression


Co-expression Network