LOC110532621 (LOC106577071)


Basic Information

Item Value
gene id LOC110532621
gene name LOC106577071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71110850 ~ 71113278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532621
aTGCTCGCCGTAGCccggccagtgcggcgaggtggaacagaatctcctcccaagtccagttcTCCAGGTGTCAATGGAGGCTCCCATTCCCTGTACTCCAGTGTGGGGGATGATGTCAGTCTGCCGTGTACCAATGTGGTCCACCCTGACTGCTCCTCTACAGTGTGGCTCTTCAGCAGAACTGAGTCTCACAGTGCTACTGAAAAGGTCTTTCAAGGGAAGATCCAAAATGAAGGAAACGAGGGCAGTGAGAGACTGGGAGTAGGGTCTGACTGCTCACTACGTGTTCGTAACATTGGCACTGAGGATACTGGAGTCTATGTCTACCGACAGTATGGCTGAGCAAATCTTGGAGAGGATActactgtctacctgtctgttctCACCATCTCCATGTCCACACCAGAGACAGATCTAAAGTATCCTAGAAATGTAACATTGAGGTGCTCTCTGCTAACATATGGCGGTCCTGTAACGTGTGACTCCTTCGTTAGAGATATTGTTAGGGTGAGCTGGGTGAATGAGACAGGTGGCGAGTTGCAGGGAGACCCCAGATACCAGGTCACACGGGTGTCTGGCTGTGACATCACTCTGACTGTGAAACTTTGGAGAAAGGATAAGAACAGGAAGTGGTGGTGTCAGCTGACTGAGGGAACGAGGAAGACATTTGTCTACCTCACTTCTAAGGTCTCAGGTGGGACTATGGATCCTGTCGGGACAATCATCACTGCTCCACAACAACCTATTGATGGTGAAAGTCCTCCAAAGCCCTCTCATTCAGGTACCAACAACATCAATGAGTTGCCAATCAGTCGCATAGTGCTCTGTGTGGCACTGCCCTTGATGGTAATTGTATATGCAGTTTACACAACTAGGAGGAACCGCCCACTAGCAGAGGTGTCCTCTGTTATAGAGCTGTAAGTCAAGACGAACAACCCCCTCCTCGTCACTCTCCATAGCATAGCGCCAAACTTACTCTACCTTCAATGAATGTGTACAACTGCGATATTATTTGCTGAAGGATTCGTGCTGACATAATACATAAAGGctttgaaaaaaataattaaaatgtgGTGCATGCTAATGGTATCCACTCAATGGGTAGTGACAGTTAATGCTTTACAAATAAAGACGTTATATTTCTGTTTTGTAGCTAGCATTAGTGTTGTCAATTGCCTAAGAGGAAGGGGAATGCTTACCTGTGATACTGCAAAACATTCTCTAAAATTTCTACTGCATTTCTCTAAATCAGTCTTTCATTACCAGCTTCTataatctacagtataatgtgtgttgtgtgtgtgtgtgtgtgtgcaagtgcgtgcttgtgtttttgtgtgtttgttttttagcGTCCATTAAGCTTGCTTACTCTCGCTCCGATTACACTGTATTTGATTTACGACCTTGTGTCActgcatctctctgtgtgtgtgtg

Function

NR:

description
uncharacterized protein LOC110532621

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532621 True 1438 mRNA 0.46 2 71110850 71113278

Neighbor

gene id symbol gene type direction distance location
soul2 LOC106576976 coding downstream 86977 71020483 ~ 71023873 (-)
slc24a3 LOC106576975 coding downstream 148871 70863113 ~ 70961979 (-)
si:dkey-187a12.4 LOC106576974 coding downstream 253082 70851922 ~ 70857768 (-)
rin2 LOC106576973 coding downstream 270144 70772035 ~ 70840706 (-)
LOC110521978 LOC106576971 coding downstream 344355 70760735 ~ 70766495 (-)
fancl fancl coding upstream 151685 71263171 ~ 71282788 (-)
LOC110532628 NA coding upstream 562753 71676031 ~ 71683123 (-)
LOC118966745 NA coding upstream 695661 71808939 ~ 71808991 (-)
bcl11aa bcl11a coding upstream 711115 71824393 ~ 71872192 (-)
LOC110528651 LOC106607091 coding upstream 782946 71896224 ~ 71961729 (-)
G79463 NA non-coding downstream 30289 71080261 ~ 71080561 (-)
G79432 NA non-coding downstream 77698 71032936 ~ 71033152 (-)
G79423 NA non-coding downstream 91048 71019579 ~ 71019802 (-)
G78995 NA non-coding downstream 108308 71002317 ~ 71002542 (-)
G78910 NA non-coding downstream 208638 70900815 ~ 70902212 (-)
G79493 NA non-coding upstream 5362 71118640 ~ 71127069 (-)
G79503 NA non-coding upstream 22112 71135390 ~ 71156648 (-)
G79513 NA non-coding upstream 33790 71147068 ~ 71148132 (-)
G79538 NA non-coding upstream 72680 71185958 ~ 71186500 (-)
G79565 NA non-coding upstream 109814 71223092 ~ 71223323 (-)
G78414 NA other downstream 755259 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 1022136 70082835 ~ 70088715 (-)
LOC110527951 coda1 other downstream 2420621 68575379 ~ 68690343 (-)
G75682 NA other downstream 2899144 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2948848 68157900 ~ 68162024 (-)
G79616 NA other upstream 208672 71321950 ~ 71386523 (-)
G79700 NA other upstream 356404 71469435 ~ 71470755 (-)
G79904 NA other upstream 629767 71743045 ~ 71743809 (-)
G80957 NA other upstream 1094651 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1135326 72202814 ~ 72251918 (-)

Expression


Co-expression Network