LOC110528701 (LOC106576988)


Basic Information

Item Value
gene id LOC110528701
gene name LOC106576988
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72008507 ~ 72040224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610836.2
ctctctctctctcgttaggGTGAGTTCATCTCCATCCTCAGCGGACACTGACGTGTTCCTCTAGCAGTATGACAAAGtatccctctttttcctccactctctttctctcttcgtcCATTCCAGTCTTCCCCGTCCCCTTTCTCTCCACATCGCAGTTTATCATCTCTCTGCACTGAAGCTCCTGCACCTGCTTCTCACCACTGCCCGCTAGACACCGACTCAACCAGCATCCAACCCCGGGAATGATACCCTTTCTCTCGGACACTACGAGAGTAGAGGCCAGTGGATAGGTCTGCTTTATGGTCTGTTTCAAAAGCTATTTGTGGTTTATCGGAAAGGCTGTGGGCTGAAGGCATGTCAAGAGGGATTACCTGTTGTTTTTAAGGGATTCTTTTCGTCGCTCTGTTGTTCGAGGGATATGATCATCTCCACTTTTATCCGGGAGGAGACTCATCAAACGGTCCCGACCGGACGCGGACGTGACTATGTTTACATAACTCTAAAGGGGATGAATTTTGAGATTTATGACAGTTTATTGGAGATAACAAGAAACAAAGTCCTCATGTCAAAATAATGGTCGTATGTGGTCATTAAAATTATTTTGGAGAGTGCAAATTGTCGCCGAACGTTCGTATAATGCTTGGGTGTGATGAAGTGAGGTAAAGTGACAGCACAGCTCAGATGTTTATCCCCTAACTTCGGCAAGATGAAATCGCTCTTCTACAGCCGCTTCTTCATCCTCCTGCCCTGGGtcctcatcgtcatcatcatgATCCATATTGACACAAGGACGTCCGTCCGAAGTCCAGCCCTGGGCCGCGGAGGGGGCGCACATAGGCAAGACAGAACCAGCCCACCCCGGGCCAACCGCTCCGCTCTCCCGGCAATCTACGCCATCACCCCGACCTACAACCGGCCAGTCCAGAAAGCTGAACTTACCCGGCTCGCTAACACATTCCGCCAGGTTCCTCGCTTCCACTGGATAGTAGTGGAGGACTCGACTGTGCGCACGGAGCTGGTGGTGCGCTTTCTCGCCCGCTCGGGGATGCAGTACACACACCTGAACATCTTTACGCCCCGCCGGTTCAAACGTACCGGGATGCCCCGTGCTACTGAGCAGAGGAACACCGCTCTCTCGTGGCTGCGGTCACATCGCTCCATCAAGGACGTGGGGATAGTATTCTTCGCGGATgatgacaacacatacagtctGGAACTGTTTGAAGAGATGCGTTCGACGCGGGGTGTGTCAGTGTGGCCGGTGGGGCTGGTCAGTGGGCGGAGGTACGAGCGCCCCATAGTGGATAAGGGCAAAGTGGTGGGCTGGTACACTGGCTGGAGGCCCGACCGCCCCTTCGCCATCGACATGGCAGGTTTTGCAGTGAACCTCCAAGTGGTCCTGGGAAACCCACGGGCGTTGTTCAAGCGTAGGGGTTCCCAGCCTGGTATGCAGGAGTCTGACTTCCTGAAACAGATCACCAAGGTGGGGGAGCTGGAGCCCAAAGCCAACAACTGCACTAGGgTGTTGGTGTGGCACACTCGTACAGAGAAGGTGAATCTGGGCAACGAGCCCAGACATCGACAGGACAGTGTGGTTATCGAAGTCTAAGGGGTGGGATAACCAAGGAGGAATAAGCAAGCCCATTGGTCAGACAGACTGACTAATTTCTTGAActacactactgacatcaccTTGCTTGACCATAACCTTGATATGGATTACACTATGATGGACAGGACTTTGGACCAATTGCACGGATGGGAACTGCTGCCTGAATGTTGTGAATGGCTCAATGAGATTCCGGACCTCAAAGGGGACCATAATGCACTGGGGTGACCATTGCTTTCCCAGGGGACTCTGCTCTCATACTGCAATGTGGCCCAGTCCCTTATAAAAAGTGATTCCTATGAAGTATGCAAGCTAAACAagaccgtctgtctgtctacatgtatgtgtgtatgtaaactcagcaaaaaaaacaaaataaaaaaaa

Function

NR:

description
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG:

id description
K10157 B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610836.2 True 1994 mRNA 0.52 4 72008507 72040224

Neighbor

gene id symbol gene type direction distance location
asrgl1 LOC106576984 coding upstream 29718 71964790 ~ 71978789 (+)
LOC110528637 NA coding upstream 685231 71280461 ~ 71323276 (+)
vrk2 LOC106576978 coding upstream 742477 71248102 ~ 71266030 (+)
ccdc85a ccdc85a coding upstream 932268 71036440 ~ 71076239 (+)
ddx43 ddx43 coding upstream 1297029 70679883 ~ 70711478 (+)
tp53bp2a NA coding downstream 76458 72116682 ~ 72167413 (+)
LOC110532645 NA coding downstream 182093 72222317 ~ 72239625 (+)
LOC118965495 NA coding downstream 188326 72227445 ~ 72229153 (+)
polh polh coding downstream 271918 72312142 ~ 72324340 (+)
LOC110528865 otor coding downstream 329989 72370213 ~ 72371779 (+)
G80033 NA non-coding upstream 35077 71881325 ~ 71973430 (+)
G80061 NA non-coding upstream 63192 71944650 ~ 71945315 (+)
G80038 NA non-coding upstream 110116 71896240 ~ 71898391 (+)
G80024 NA non-coding upstream 136475 71871738 ~ 71872032 (+)
G79996 NA non-coding upstream 140940 71848330 ~ 71867567 (+)
G80296 NA non-coding downstream 83435 72123659 ~ 72123890 (+)
G80298 NA non-coding downstream 85125 72125349 ~ 72125549 (+)
G80328 LOC106577086 non-coding downstream 136012 72176236 ~ 72266766 (+)
G80324 NA non-coding downstream 206506 72246730 ~ 72248352 (+)
G78121 NA other upstream 1353546 70571665 ~ 70654961 (+)
G75747 NA other upstream 3633578 68374505 ~ 68374929 (+)
G74139 NA other upstream 5223538 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 5249523 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 1511392 73551616 ~ 73571737 (+)
G83836 NA other downstream 2869001 74909225 ~ 74909806 (+)
G83829 NA other downstream 3072436 75112660 ~ 75114190 (+)
G83979 NA other downstream 3104640 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 4417900 76457821 ~ 76459823 (+)

Expression


Co-expression Network