Gene
RNA
| Item | Value |
|---|---|
| gene id | smap1 |
| gene name | LOC106576989 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 72041913 ~ 72104027 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| stromal membrane-associated protein 1-like |
| id | description |
|---|---|
| K12486 | SMAP; stromal membrane-associated protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036984688.1 | False | 3118 | mRNA | 0.50 | 10 | 72041913 | 72104012 |
| XM_036984694.1 | False | 3117 | mRNA | 0.50 | 10 | 72041913 | 72104014 |
| XM_036984701.1 | False | 3117 | mRNA | 0.50 | 10 | 72041913 | 72104014 |
| XM_036984654.1 | False | 3191 | mRNA | 0.50 | 11 | 72041913 | 72104016 |
| XM_036984664.1 | False | 3188 | mRNA | 0.50 | 11 | 72041913 | 72104016 |
| XM_036984668.1 | False | 3189 | mRNA | 0.50 | 11 | 72041913 | 72104017 |
| XM_036984674.1 | False | 3183 | mRNA | 0.50 | 11 | 72041913 | 72104020 |
| XM_036984679.1 | False | 3180 | mRNA | 0.50 | 11 | 72041913 | 72104020 |
| XM_036984645.1 | False | 3259 | mRNA | 0.50 | 11 | 72041913 | 72104021 |
| XM_036984649.1 | False | 3257 | mRNA | 0.50 | 11 | 72041913 | 72104022 |
| XM_036984626.1 | False | 3331 | mRNA | 0.50 | 12 | 72041913 | 72104024 |
| XM_036984629.1 | False | 3328 | mRNA | 0.50 | 12 | 72041913 | 72104024 |
| XM_036984638.1 | True | 3322 | mRNA | 0.50 | 12 | 72041913 | 72104027 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528682 | LOC106576986 | coding | downstream | 40653 | 71994810 ~ 72001260 (-) |
| LOC110528651 | LOC106607091 | coding | downstream | 80184 | 71896224 ~ 71961729 (-) |
| bcl11aa | bcl11a | coding | downstream | 169721 | 71824393 ~ 71872192 (-) |
| LOC118966745 | NA | coding | downstream | 232922 | 71808939 ~ 71808991 (-) |
| LOC110532628 | NA | coding | downstream | 358790 | 71676031 ~ 71683123 (-) |
| LOC110528822 | clm1 | coding | upstream | 72388 | 72176415 ~ 72193773 (-) |
| LOC110528794 | LOC106576993 | coding | upstream | 98787 | 72202814 ~ 72251918 (-) |
| LOC110528758 | NA | coding | upstream | 156057 | 72260084 ~ 72269534 (-) |
| LOC118965494 | LOC106576993 | coding | upstream | 172671 | 72276698 ~ 72281244 (-) |
| LOC110528856 | gtpbp2 | coding | upstream | 226308 | 72330335 ~ 72355781 (-) |
| G80190 | NA | non-coding | downstream | 80595 | 71927506 ~ 71961318 (-) |
| G80148 | NA | non-coding | downstream | 200344 | 71841320 ~ 71841569 (-) |
| G80146 | NA | non-coding | downstream | 204140 | 71837529 ~ 71837773 (-) |
| G80145 | NA | non-coding | downstream | 205589 | 71836098 ~ 71836324 (-) |
| G79973 | NA | non-coding | downstream | 242493 | 71799221 ~ 71799420 (-) |
| G80915 | NA | non-coding | upstream | 20650 | 72124677 ~ 72124890 (-) |
| G80934 | LOC106576990 | non-coding | upstream | 46760 | 72150787 ~ 72152893 (-) |
| G80975 | NA | non-coding | upstream | 100480 | 72204507 ~ 72264780 (-) |
| G81095 | NA | non-coding | upstream | 323968 | 72427995 ~ 72428306 (-) |
| G79904 | NA | other | downstream | 298104 | 71743045 ~ 71743809 (-) |
| G79700 | NA | other | downstream | 571454 | 71469435 ~ 71470755 (-) |
| G79616 | NA | other | downstream | 655390 | 71321950 ~ 71386523 (-) |
| G78414 | NA | other | downstream | 1686322 | 70354916 ~ 70355591 (-) |
| LOC118965321 | LOC106576963 | other | downstream | 1953199 | 70082835 ~ 70088715 (-) |
| G80957 | NA | other | upstream | 103902 | 72207929 ~ 72211089 (-) |
| G83429 | NA | other | upstream | 2468420 | 74572447 ~ 74572789 (-) |
| fank1 | fank1 | other | upstream | 2868185 | 74971772 ~ 74975108 (-) |
| G84713 | NA | other | upstream | 3424316 | 75528343 ~ 75528903 (-) |
