LOC110528822 (clm1)


Basic Information

Item Value
gene id LOC110528822
gene name clm1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72176415 ~ 72193773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610957.2
TGCCTGGGTGCCCTGGTCCCTGACACACACCAGTGCGCCTATTCAAACATAAAAGCTACCAGAGAATTTCTCTCTCATCCAATCATGGCTCCATATCTCCTCCTTGTCCTGCACATTCTTTTCTTCCTCACTGGACTGTCAGGTATTCACGGTGTGTCCACAGTGAGTCATGTGTCTGTAAGTGAAGGAGGCTCCATCACCATCCCATGTCTCTATCATCATGGCTATGAAGAACATGTGAAATACTGGTGTAGTGgatattttttcaatttttgctcCACTCTAATGCGTACTGACTCTCAGAGTGCATCTAATTGGTTGTCCATCGCTGATAATGTTACTACAAGAGTCTTCACTGTGACCATGAAGAATCTGCAACTAGGATCTGGATATTACTGGTGTGCTGTGGAGAAAGGTGGCACCACACATCTATATCTGTCAGTTGCCACAGGTACTGCAAGACTCTATGTGGACCAACAACATGTGACTGGAGTTGAAGGACAGAGTGTCACTGTCAATTGTAACTATAGTAACTCTGGAGATTTCTGCTGGTGCAGGCTGGGTGGCTCTTGCGTGGTGAGGACTGTTGGGAATTTAGATGGAGCATCAGTAGAATTAAAGCGGATTCTTGCCAATGGAAAAAAAGTCATGATCGTAACGATGAGTCAACTAAAAATGAAGAACACTGGCTGGTACTGGTGTGCAGTTGGAGATCTACAGATGCCTGTTCATATCACTGTTAACCAACCAaccacaacacagagtaacacaacCACCACAAACCAGAAGAATGGGGGAACTGACGAGAAGCGACAGGAAAGGATCCAGAGTTTGCTGGTTGTCCTGCTCATTCCTCTGAGCctgttggtggtggtgatagcTGGTACCTTGGTCACATTGAAGAAGTTGAGAAAACAAAAGGACAAGAAAGCAAAGGACCAACCAGCAAACACCTCAGTACAGTCTGCAGACTCTGAGCCGAACATTACCTACAGTACTGTGAGTCACACCAGAGGAACAGCACAACAGGGCCTAAACCCTGAGAGCCACGGTGACTTATACAGCACTGTGATTCCTAAGCAGCACAGGACAGCACAAAGGGAAGCAGAACCAGGTGATGTGGTCTACAGCACAGTGGCCGCACACCAGAGATAGGAGGCAACAGAACAACAGAGACTGAGTGAAGTCCCTCCAAATTGCAAATAGGCCTTGTTCCATTTTACTCCCTAGCTCTCACCTCTTTGGGGGTTACTGATCTGGAAGGACTGAATAAGACTAATGCTTGTCTATCACAGTCTTGTTCTTTTCCATTGTGCAGGCTCTGCTGGTTTAATTATGCCAGTGATTGGGTATTCTAGACAAAGACAGATTAATTGAGTGTAATTTTAGATTTTCTGTTGTTTAATGTACACACTGATCATGTGTATTTCAATGCTGCATATCTGAAATAAACTACCTTAACGAGAAACTTACCTGAAATGAATGCATG
>XM_021610964.2
TGCCTGGGTGCCCTGGTCCCTGACACACACCAGTGCGCCTATTCAAACATAAAAGCTACCAGAGAATTTCTCTCTCATCCAATCATGGCTCCATATCTCCTCCTTGTCCTGCACATTCTTTTCTTCCTCACTGGACTGTCAGGTATTCACGGTGTGTCCACAGTGAGTCATGTGTCTGTAAGTGAAGGAGGCTCCATCACCATCCCATGTCTCTATCATCATGGCTATGAAGAACATGTGAAATACTGGTGTAGTGgatattttttcaatttttgctcCACTCTAATGCGTACTGACTCTCAGAGTGCATCTAATTGGTTGTCCATCGCTGATAATGTTACTACAAGAGTCTTCACTGTGACCATGAAGAATCTGCAACTAGGATCTGGATATTACTGGTGTGCTGTGGAGAAAGGTGGCACCACACATCTATATCTGTCAGTTGCCACAGGTACTGCAAGACTCTATGTGGACCAACAACATGTGACTGGAGTTGAAGGACAGAGTGTCACTGTCAATTGTAACTATAGTAACTCTGGAGATTTCTGCTGGTGCAGGCTGGGTGGCTCTTGCGTGGTGAGGACTGTTGGGAATTTAGATGGAGCATCAGTAGAATTAAAGCGGATTCTTGCCAATGGAAAAAAAGTCATGATCGTAACGATGAGTCAACTAAAAATGAAGAACACTGGCTGGTACTGGTGTGCAGTTGGAGATCTACAGATGCCTGTTCATATCACTGTTAACCAACCAaccacaacacagagtaacacaacCACCACAAACCAGAAGAATGGGGGAACTGACGAGAAGCGACAGGAAAGGATCCAGAGTTTGCTGGTTGTCCTGCTCATTCCTCTGAGCctgttggtggtggtgatagcTGGTACCTTGGTCACATTGAAGAAGTTGAGAAAACAAAAGGACAAGAAAGCAAAGGACCAACCAGCAAACACCTCAGTACAGTCTGCAGACTCTGAGCCGAACATTACCTACAGTACTGTGAGTCACACCAGAGGAACAGCACAACAGGAAGCAGAACCAGGTGATGTGGTCTACAGCACAGTGGCCGCACACCAGAGATAGGAGGCAACAGAACAACAGAGACTGAGTGAAGTCCCTCCAAATTGCAAATAGGCCTTGTTCCATTTTACTCCCTAGCTCTCACCTCTTTGGGGGTTACTGATCTGGAAGGACTGAATAAGACTAATGCTTGTCTATCACAGTCTTGTTCTTTTCCATTGTGCAGGCTCTGCTGGTTTAATTATGCCAGTGATTGGGTATTCTAGACAAAGACAGATTAATTGAGTGTAATTTTAGATTTTCTGTTGTTTAATGTACACACTGATCATGTGTATTTCAATGCTGCATATCTGAAATAAACTACCTTAACGAGAAACTTACCTGAAATGAATGCATG
>XM_021610973.2
TGCCTGGGTGCCCTGGTCCCTGACACACACCAGTGCGCCTATTCAAACATAAAAGCTACCAGAGAATTTCTCTCTCATCCAATCATGGCTCCATATCTCCTCCTTGTCCTGCACATTCTTTTCTTCCTCACTGGACTGTCAGGTATTCACGGTGTGTCCACAGTGAGTCATGTGTCTGTAAGTGAAGGAGGCTCCATCACCATCCCATGTCTCTATCATCATGGCTATGAAGAACATGTGAAATACTGGTGTAGTGgatattttttcaatttttgctcCACTCTAATGCGTACTGACTCTCAGAGTGCATCTAATTGGTTGTCCATCGCTGATAATGTTACTACAAGAGTCTTCACTGTGACCATGAAGAATCTGCAACTAGGATCTGGATATTACTGGTGTGCTGTGGAGAAAGGTGGCACCACACATCTATATCTGTCAGTTGCCACAGGTACTGCAAGACTCTATGTGGACCAACAACATGTGACTGGAGTTGAAGGACAGAGTGTCACTGTCAATTGTAACTATAGTAACTCTGGAGATTTCTGCTGGTGCAGGCTGGGTGGCTCTTGCGTGGTGAGGACTGTTGGGAATTTAGATGGAGCATCAGTAGAATTAAAGCGGATTCTTGCCAATGGAAAAAAAGTCATGATCGTAACGATGAGTCAACTAAAAATGAAGAACACTGGCTGGTACTGGTGTGCAGTTGGAGATCTACAGATGCCTGTTCATATCACTGTTAACCAACCAaccacaacacagagtaacacaacCACCACAAACCAGAAGAATGGGGGAACTGACGAGAAGCGACAGGAAAGGATCCAGAGTTTGCTGGTTGTCCTGCTCATTCCTCTGAGCctgttggtggtggtgatagcTGGTACCTTGGTCACATTGAAGAAGTTGAGAAAACAAAAGGACAAGAAAGCAAAGGACCAACCAGCAAACACCTCAGTACAGTCTGCAGACTCTGAGCCGAACATTACCTACAGTACTGTGAGTCACACCAGAGGAACAGCACAACAGGAAGCAGAACCAGGTGATGTGGTCTACAGCACAGTGGCCGCACACCAGAGATAGCAGGAGGCAACAGAACAACAGAGACTGAGTGAAGTCCCTCCAAATTGCAAATAGGCCTTGTTCCATTTTACTCCCTAGCTCTCACCTCTTTGGGGGTTACTGATCTGGAAGGACTGAATAAGACTAATGCTTGTCTATCACAGTCTTGTTCTTTTCCATTGTGCAGGCTCTGCTGGTTTAATTATGCCAGTGATTGGGTATTCTAGACAAAGACAGATTAATTGAGTGTAATTTTAGATTTTCTGTTGTTTAATGTACACACTGATCATGTGTATTTCAATGCTGCATATCTGAAATAAACTACCTTAACGAGAAACTTACCTGAAATGAATGCATG

Function

NR:

description
polymeric immunoglobulin receptor-like isoform X2

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610957.2 False 1489 mRNA 0.45 10 72176415 72193773
XM_021610964.2 False 1417 mRNA 0.44 9 72176415 72193773
XM_021610973.2 True 1420 mRNA 0.45 9 72176415 72193773

Neighbor

gene id symbol gene type direction distance location
smap1 LOC106576989 coding downstream 72388 72041913 ~ 72104027 (-)
LOC110528682 LOC106576986 coding downstream 175155 71994810 ~ 72001260 (-)
LOC110528651 LOC106607091 coding downstream 214686 71896224 ~ 71961729 (-)
bcl11aa bcl11a coding downstream 304223 71824393 ~ 71872192 (-)
LOC118966745 NA coding downstream 367424 71808939 ~ 71808991 (-)
LOC110528794 LOC106576993 coding upstream 9041 72202814 ~ 72251918 (-)
LOC110528758 NA coding upstream 66311 72260084 ~ 72269534 (-)
LOC118965494 LOC106576993 coding upstream 82925 72276698 ~ 72281244 (-)
LOC110528856 gtpbp2 coding upstream 136562 72330335 ~ 72355781 (-)
LOC110532653 bfsp1 coding upstream 315185 72508958 ~ 72525721 (-)
G80934 LOC106576990 non-coding downstream 23522 72150787 ~ 72152893 (-)
G80915 NA non-coding downstream 51525 72124677 ~ 72124890 (-)
G80190 NA non-coding downstream 215097 71927506 ~ 71961318 (-)
G80148 NA non-coding downstream 334846 71841320 ~ 71841569 (-)
G80146 NA non-coding downstream 338642 71837529 ~ 71837773 (-)
G80975 NA non-coding upstream 10734 72204507 ~ 72264780 (-)
G81095 NA non-coding upstream 234222 72427995 ~ 72428306 (-)
G81119 NA non-coding upstream 259635 72453408 ~ 72458642 (-)
G81127 NA non-coding upstream 275071 72468844 ~ 72516167 (-)
G79904 NA other downstream 432606 71743045 ~ 71743809 (-)
G79700 NA other downstream 705956 71469435 ~ 71470755 (-)
G79616 NA other downstream 789892 71321950 ~ 71386523 (-)
G78414 NA other downstream 1820824 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 2087701 70082835 ~ 70088715 (-)
G80957 NA other upstream 14156 72207929 ~ 72211089 (-)
G83429 NA other upstream 2378674 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 2778439 74971772 ~ 74975108 (-)
G84713 NA other upstream 3334570 75528343 ~ 75528903 (-)

Expression


Co-expression Network