LOC118965495


Basic Information

Item Value
gene id LOC118965495
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72227445 ~ 72229153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052784.1
TTCCATTACCTGATGATGCAGTGACATACAGCACTGTGGTCACCAAGAACAAGACCCAaccaaatGCAGCAGAACCAGATGATGTGGTCTACAGCACAGTGGCCCAACACCAGAGATAGCAGGGAGTAGCAGCAGAGCAGTGACAGCATTAAATCCTTGGTCCCAAAGAACCAGACAATCTCTTTATGGGGGAAAATACTGGAGGATCTCAGTGTACTAAGGCATCAGAAGAAATGTGTCCAGATTGACAGTAAA
>TU88794
GGACAAGAAGGCAAAGGACCAACCAGCAAACACCACAGTAGCCCTGAACCCTGAGAGCCACGGTGACTTGTACAGCACTGTGATCCCTAAGCAGCACAGGACAGCAAAAAAGGTTCCATTACCTGATGATGCAGTGACATACAGCACTGTGGTCACCAAGAACAAGACCCAaccaaatGCAGCAGAACCAGATGATGTGGTCTACAGCACAGTGGCCCAACACCAGAGATAGGGAGTAGCAGCAGAGCAGTGACAGCATTAAATCCTTGGTCCCAAAGAACCAGACAATCTCTTTATGGGGGAAAATACTGGAGGATCTCAGTGTACTAAGGCATCAGAAGAAATGTGTCCAGATTGACAGTAAAAC

Function

NR:

description
polymeric immunoglobulin receptor-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052784.1 False 255 mRNA 0.46 3 72228550 72229151
TU88794 True 367 lncRNA 0.46 5 72227445 72229153

Neighbor

gene id symbol gene type direction distance location
tp53bp2a NA coding upstream 61137 72116682 ~ 72167413 (+)
LOC110528701 LOC106576988 coding upstream 188326 72008507 ~ 72040224 (+)
asrgl1 LOC106576984 coding upstream 249761 71964790 ~ 71978789 (+)
LOC110528637 NA coding upstream 905274 71280461 ~ 71323276 (+)
vrk2 LOC106576978 coding upstream 962520 71248102 ~ 71266030 (+)
polh polh coding downstream 82991 72312142 ~ 72324340 (+)
LOC110528865 otor coding downstream 141062 72370213 ~ 72371779 (+)
pcsk2 pcsk2 coding downstream 190798 72419949 ~ 72508133 (+)
prokr1b LOC106577087 coding downstream 316462 72545613 ~ 72561059 (+)
LOC110528891 LOC106577001 coding downstream 587041 72816192 ~ 73083836 (+)
G80298 NA non-coding upstream 103001 72125349 ~ 72125549 (+)
G80296 NA non-coding upstream 104660 72123659 ~ 72123890 (+)
G80033 NA non-coding upstream 255120 71881325 ~ 71973430 (+)
G80324 NA non-coding downstream 17579 72246730 ~ 72248352 (+)
G80326 NA non-coding downstream 21490 72250641 ~ 72267527 (+)
G80413 NA non-coding downstream 97253 72326404 ~ 72332579 (+)
G80416 NA non-coding downstream 104702 72333853 ~ 72345628 (+)
G80417 NA non-coding downstream 115489 72344640 ~ 72352263 (+)
ccdc85a ccdc85a other upstream 1152448 71036440 ~ 71076239 (+)
G78121 NA other upstream 1573589 70571665 ~ 70654961 (+)
G75747 NA other upstream 3853621 68374505 ~ 68374929 (+)
G74139 NA other upstream 5443581 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 5469566 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 1322465 73551616 ~ 73571737 (+)
G83836 NA other downstream 2680074 74909225 ~ 74909806 (+)
G83829 NA other downstream 2883509 75112660 ~ 75114190 (+)
G83979 NA other downstream 2915713 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 4228973 76457821 ~ 76459823 (+)

Expression


Co-expression Network