LOC118965494 (LOC106576993)


Basic Information

Item Value
gene id LOC118965494
gene name LOC106576993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72276698 ~ 72281244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984831.1
AATAGAGTTATTTACAATGTTTTGACCATGTTGGTCGTCGTCAGGTTCAGCCTTTATTTCACCAGGATGTTGCGCAGGGCACAGAGTTGCGTTAAAGACAGTGATGTCTATGTGTGAATCGGGAAGTAGAAGACACACACCAGGTCACAAGTACCTaaacacacacgctctctcatcCATTCATGGCTCCACATTTCCTCCTTGTCCTGCACATCCTTTTCTTCCTCGCTGGACTTTCAGCTATACAGAGTGTGTCCACAGTGAGACATGTGTCTGTAAAGCAAGGAGGCTCCATCACCATCCCATGTCTCTATGATCTGAGATATAGAAACAGTGTGAAGTACTGGTGTGCGGGATCTAGTATCCTTGGTTGCTCTTCTGTAGTACGCACTGACCATCCTAAGACCAGTGGAAAGACCTCATTCTCTGATGACATCAACCAGCTAGTCTTCACTGTGACCATGACAAGTCTTAGTTCTAGTGATTCTGATTATTACTGGTGTATTGTGGAGAGGAAGAACAAGGCAGGTGATGGGAATAGACTGCAGATATCTGTTACTCCAGATACTCCAGGACTGTATGTGGATCAACAAGAAGTGACTGGAGTTGTAGGACAGAATGTCACTGTGCAATGTTACTACAGTGAAGCTGGAGCCAGAGGGAGGTGGTGCAGGATGGGTGGGAAATGTCTGCTGAATTCTGGAACTCTAGATGGAACATCAGTGACATTACACCAGCAGACCAATATTGTCACCAATGGCAATGTTTTAACGGTGACTATGAGTGCACTGAGGATAGTGGACACTGGCTGGTACAGGTGTGCAAATGGAGACTATCAGATGCCTGTTCATATCACTGTCAATCAGCTAACCACAAAGCAAAATACCACCTTCATGCCAACAGCCCAATCTGTAGTCTCTTCTCAGCCGTCAGTCAGCAACATCCAGACATTGGAACGTACATTCTTCTACCTGCTGAAAGTTGGTAATGCACTGCTCTTCCTCCTGTGCAACATCATTGGAGTGGTAAAGTTGAGGAAAAACCGACATCAAGATGATACCAAGGATGTATAGAAACCAAAGAGGTCTGTCTGGAGTGATCAAGGGTCAAATTTACCAACTTTATCCAGCTTTATCTGTATGATTCATTTTATtcaaattattatattattatgtaCATACATGTGTTGTGGAATTAAATTATTGTCTGATGTGTCTCTAACCCTTTTCCTGATGGTTATTTCTCATGGtttaattgtcacgttctgaccttagttcttttattatgtctttgttttagtatagtcagggcgtgatttgggtgggttgtctatgttagttttttttttttttttttgatttgctgtttctgtgtttggcctggtatggttctcaatcagaggcagctgtcaatcgttgtccctgattgagaaccatatttaggtagcctgttttctattgtgtttcgtgggtgattattttctgttgtctgttgtgtgtctgcaccagccagaacagttttcggtcgtttctctttgttattttgattATTTCCGTCTTCAttctaataaatatggacacataccacg

Function

NR:

description
PREDICTED: polymeric immunoglobulin receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984831.1 True 1588 mRNA 0.42 5 72276698 72281244

Neighbor

gene id symbol gene type direction distance location
LOC110528758 NA coding downstream 7164 72260084 ~ 72269534 (-)
LOC110528794 LOC106576993 coding downstream 24782 72202814 ~ 72251918 (-)
LOC110528822 clm1 coding downstream 82925 72176415 ~ 72193773 (-)
smap1 LOC106576989 coding downstream 172671 72041913 ~ 72104027 (-)
LOC110528682 LOC106576986 coding downstream 275438 71994810 ~ 72001260 (-)
LOC110528856 gtpbp2 coding upstream 49091 72330335 ~ 72355781 (-)
LOC110532653 bfsp1 coding upstream 227714 72508958 ~ 72525721 (-)
LOC110532660 LOC107688027 coding upstream 325491 72606735 ~ 72607622 (-)
plek LOC106577000 coding upstream 330942 72612186 ~ 72618218 (-)
LOC110528940 LOC106577088 coding upstream 853409 73134648 ~ 73136850 (-)
G80975 NA non-coding downstream 11918 72204507 ~ 72264780 (-)
G80934 LOC106576990 non-coding downstream 123805 72150787 ~ 72152893 (-)
G80915 NA non-coding downstream 151808 72124677 ~ 72124890 (-)
G80190 NA non-coding downstream 315380 71927506 ~ 71961318 (-)
G81095 NA non-coding upstream 146751 72427995 ~ 72428306 (-)
G81119 NA non-coding upstream 172164 72453408 ~ 72458642 (-)
G81127 NA non-coding upstream 187600 72468844 ~ 72516167 (-)
G81120 pcsk2 non-coding upstream 202550 72483794 ~ 72508066 (-)
G81145 NA non-coding upstream 211483 72492727 ~ 72532701 (-)
G80957 NA other downstream 65609 72207929 ~ 72211089 (-)
G79904 NA other downstream 532889 71743045 ~ 71743809 (-)
G79700 NA other downstream 806239 71469435 ~ 71470755 (-)
G79616 NA other downstream 890175 71321950 ~ 71386523 (-)
G83429 NA other upstream 2291203 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 2690968 74971772 ~ 74975108 (-)
G84713 NA other upstream 3247099 75528343 ~ 75528903 (-)
G85866 NA other upstream 4052224 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 4086049 76324531 ~ 76399997 (-)

Expression


Co-expression Network