LOC110528856 (gtpbp2)


Basic Information

Item Value
gene id LOC110528856
gene name gtpbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72330335 ~ 72355781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611017.2
ACGAGTCAATGACGCGGAGTTGTTATTGTCCACTTTGTAGTGGGGGCAGGAACCCTAACCAGCTGGCAGTTGAGTTGTTCtcgctttttacatttttttttgttgaaactCTCCCCATTAAAAATACGCTTGAATGTCTCGGTTTTAGGACGTTTTCTATTTAAAATCGTACATAGCTAGCGTACAGACGGTTCCGAAGTAATGGATTCGCGGGTATCAGAGCTTTTTGGTTCAGGTTCCGGGCAGAAGTCTGGTTGCCAAGGAGTTGGATCTAACGTTAGTTCGGGGAATGGCTTCGGAATGAGTTCTAAAAAGTGTTTGAAGAATGCCAAAAAAGCTAAGAGTCGGTCATCCCGAAACTCCAAACCAAGCAATAACCCCCCATATCTTCCCCCGGCTAATCTACCCCCAGAGgcTGAAGAGGGGAATATAGAGTACAAGCTGAAGCTGATCGACCCCACGCAATACCGCTTTGAACACCTGGCCACACAGATGAAATGGCGACTACAGGAGGGGCGGGGTGAGGCTGTCTATCAGATTGGTGTCGATGACAACGGCATGCTGGTGGGCCTATCAGAGGAAGACCTGAGGTCATCGCTAAAGACCCTAGGCAGGATGGCAGAGAAGGTTGGGGCTGACATCACcattctcagagagagagaggtggaccaTGATGCTGATATCCCTCGTAAGATAGCTGAGGTTCTCATAAGGAAGGTGCCAGACGATCAGCAGTTCCTGGACCTGCGGGTGGCTGTGCTGGGTAACGTGGACTCAGGAAAGTCCACCCTGCTAGGTGTGCTGACACAGGGTGAGCTGGATAACGGGCGAGGCCGGGCCAGACTCAACCTCTTCAGACACCTCCACGAGATCCAGACAGGACGCACCTCCAGCATCAGCTTTGAGATTCTCGGCTTCAACAgcaaaggagagGTGGTGAACTACAGTGAGTCGCGGACAGCAGAGGAGATATGTGAGAGTGCCTCTAAGATGATCACGTTCATTGACTTGGCCGGCCACCACAAGTACCTGAAGACAACCATCTTTGGCCTGACCAGCTACTGCCCAGACTTTGCCATGCTGGTGGTCAGTGCAAACACAGGCATCGCCGGTACAACACGGGAGCACCTGGGTCTGGCCATGGCTCTGAAGGTGCCCATCTTCATTGTGGTCAGTAAGGTGGACCTGTGTAAGCGCGAAACGGTGGAGCGCACGGTCCGGCAGCTAGAGCGCATCCTCAAACAGCCCGGCTGCAACAAGGTGCCTCTGGTGGTGTCCACTGCTGACGATGCCGTCACGGCCGCACAGCAGTTCGCTCAGTCACCCAGCATCACTCCCATCTTCACCGTGTCCAGTGTGTCTGGGGAAAGTCTGAATCTGCTCAAGGTCTTCTTCAACATCATCCCCCCACTCAGCAACAGCAAGGAACAGGAGGAGCTCATGCAACAGCTCACTGAGTTCCAGGTGGATGAGATCTACACAGTGCCTGATGTGGGGACAGTGGTGGGAGGAACTCTATACAGTGGTATCTGTCGTGAGGGGGAGCAGCTGGTTGTGGGTCCTACAGACTCCGGTCAGTTCCTCAAGTTGACAGTGTGCAGCATCCAGAGGAACCGCTCAGCATGCAGGGTACTGAGGGCCGGCCAGGCCGCCACGCTCGCACTGGACACTTTCGACCGCTCGCTGTTACGCAAGGGTATGGTGATGGTGAGTCCAGAGATGAACCCCACTATCTGTTGGCTGTTTGAGGCGGAGATCGTGCTGCTATTCCACGCCAAGACCTTCCACAAGGGCTTCCAGGTCACTGTGCACGTGGGCAACATCAGACAGACTGCTACTGTGAAGGCTGTGCACGGCAAGGAGGAGCTGAGGACAGGTGAGAAGGCAGTGGTGTGTTTTAAGTTCATTAAGCACCCAGAGTACCTGAAGGTGGGGGCCAagctgctgttcagagagggagCCACCAAAGGCATCGGCCAGGTCACCAAGCTGCAGCCTGTCTCCCAGTCACAGCCCTCACAgagtgaggaggaggacgaggccTAGAATGCAGAACCGCCCAGTGGAACAGGAGAACTACAGCCGTCCCAGCTAGATCCCAGGATCTAGAACATCGGAGGAGAGGGttccgtctctttctcctgtcATCTTCAGCCTTCCTGCTTCTTCCAAAGCCCCTCTCCTGTCATCTCAGCAAAGAACCAACTTTTCCCTCAACTTCTGTCTTTTACTTTGTTTTTCCAAAGCCTTGTTGTCACCAAACCTTTTCTCAAGCCTTTTCAAGAACTGCTATTTCGATTGTTTCCTTTTGCTTTTCTAGATACTGATGAgggaagtatatatttttttctcctgTGTCACCTGTTCACCTAGCAACAGTCACCACGGTGAGGTTGAGGTGTAAGGAAGACCTGGTTACAAAAGGCACAGAGATCTATCCAATAGTGACTATGGAAATGAGTGTAAAGCAGCAGTCACCTTAAACACAGTTGATTCACACCTCTGGGTGAAGTGCTTACACACACTCGCCTCTCACTCTAACATACATTCGTGTACTGAAACACAGGTGCGTCCACACACACTGACGCCGGGATTTATCACCTGAAAAGGCACTGAGTTCTGTTACCAGATGTCTGGCATGTTTACAAACTAAAAATGCAGACAGAGGAGTGATGGCAAATCAATGTGAGTTTTCTTCTATTGCAGCTACAGAACTAGGATGTTAGAATTGTTATGCCTCCTCTGTCAACTTCATAATCCCACATCATCTGGTTTGTATGACCTGCACCGTGCCTGGCTGAAAGTGACAAAAGTCCTCTTATACCATGTTTGAATATGTTGTTCACATTGGCACTTTATGATGAGGCATTTCCTATTAGCTTGTGATGTATGGGTGAAACTTGACCTTGAACTTGCTCTCACTGATATTCATCCCCAGTAAAGTTCTCCTTCCTCTGGCACAGTTTGAGAATTATGTTTGTAACTCGCAGCAATGCCTCTCGATAGTCCGACTAACCAATGAATGGTGTTGCTACCTACTTTTCAAGTGCTTTAGTCACTCAGGTCAGTATAGTTCATACAGTATAGACACCATTCCACTCTCTCACAGAACTACTCCAATGATTTGAGATTTTATTGATAATTTTGAGTGTCTTTGAGGAATAGTCAGCCATTTCTCCCAAAGAGTGACTACTTTGTGTGTTTTGATTATGCTTATTGTTTAAAAAGCGGCCACTTTGTGCTGCCACGTTTAAACTGCCCTGTTCGGCAATCGTGTCCGAGGTTGTCTTTTTCTGTCTTCTCCCTTACGTTACTGTTGTCTCTGATTATGAAGGGGTAAAACACAGTGCCTAGTGGAACTACTTTTGGAGTACCCTTCCATGACACCCCCCAGGGTTTTACAACTTTTTAGGTAAATCAACTTGATTTGGTGCTACTCCTTGAAACAACTTTTGATATCTAGATGATGAATTAGGGAAAGGTGTTCATTGCTGAATTTGTTTGTTCAAGTCTGCTGTTGACCTTATAAAGTGTCAAGTTATTGCATGTTAGAAAGAATGACGCAGAGAAATCACTCGCTCATTTATGCCTTGTTCACGTGCTTCAGATCTCTGGAATGTccaacttgctaactggttgaacgCGCGGTACGTGTAtctacaaccagttagcaagttggACATTTCTGAATCTCCTATTTCCAACCCGCACGTGAACGTGGCATTAACTATTTAAGAGGGGCAACTAAATGTGCTCTTTTTGTTGCACATCATATGGTATTATGTGTGCACTCATAGAGGGGAAAATGACTATTTGAACCAAAATATGAAAAGAGCTGATCAGATGTCAATGAATTTTTGCATCTAAGTaatgtttctgtttttttatagATTTGTAGTGGTTTCTAATTTCACTCCATTTTAATTCACCTGTTGTTCAGACTGTTTTAGTCCAGCACCAACAAGTGTCACGTGTTCTCTACCACGGATGCAAGGATTgttttccttaaaaaaaaaaatagtttggaGGGTGAAGTACCACACATTTATGTACAGATCCAGTTTGTATATTATGATACCCATAAATAAAAagttattacattta

Function

symbol description
gtpbp2 Enables identical protein binding activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, no-go decay and rescue of stalled ribosome. Predicted to be located in extracellular region and platelet alpha granule lumen.

NR:

description
GTP-binding protein 2

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24888 GTPBP2; GTP-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611017.2 True 4104 mRNA 0.47 12 72330335 72355781

Neighbor

gene id symbol gene type direction distance location
LOC118965494 LOC106576993 coding downstream 49091 72276698 ~ 72281244 (-)
LOC110528758 NA coding downstream 60801 72260084 ~ 72269534 (-)
LOC110528794 LOC106576993 coding downstream 78419 72202814 ~ 72251918 (-)
LOC110528822 clm1 coding downstream 136562 72176415 ~ 72193773 (-)
smap1 LOC106576989 coding downstream 226308 72041913 ~ 72104027 (-)
LOC110532653 bfsp1 coding upstream 153177 72508958 ~ 72525721 (-)
LOC110532660 LOC107688027 coding upstream 250954 72606735 ~ 72607622 (-)
plek LOC106577000 coding upstream 256405 72612186 ~ 72618218 (-)
LOC110528940 LOC106577088 coding upstream 778872 73134648 ~ 73136850 (-)
LOC110528926 LOC106577002 coding upstream 784683 73140464 ~ 73290110 (-)
G80975 NA non-coding downstream 65555 72204507 ~ 72264780 (-)
G80934 LOC106576990 non-coding downstream 177442 72150787 ~ 72152893 (-)
G80915 NA non-coding downstream 205445 72124677 ~ 72124890 (-)
G80190 NA non-coding downstream 369017 71927506 ~ 71961318 (-)
G81095 NA non-coding upstream 72214 72427995 ~ 72428306 (-)
G81119 NA non-coding upstream 97627 72453408 ~ 72458642 (-)
G81127 NA non-coding upstream 113063 72468844 ~ 72516167 (-)
G81120 pcsk2 non-coding upstream 128013 72483794 ~ 72508066 (-)
G81145 NA non-coding upstream 136946 72492727 ~ 72532701 (-)
G80957 NA other downstream 119246 72207929 ~ 72211089 (-)
G79904 NA other downstream 586526 71743045 ~ 71743809 (-)
G79700 NA other downstream 859876 71469435 ~ 71470755 (-)
G79616 NA other downstream 943812 71321950 ~ 71386523 (-)
G83429 NA other upstream 2216666 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 2616431 74971772 ~ 74975108 (-)
G84713 NA other upstream 3172562 75528343 ~ 75528903 (-)
G85866 NA other upstream 3977687 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 4011512 76324531 ~ 76399997 (-)

Expression


Co-expression Network