LOC110528940 (LOC106577088)


Basic Information

Item Value
gene id LOC110528940
gene name LOC106577088
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73134648 ~ 73136850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611112.2
CATCGCAGAGCCATGCGTCaaaatactctactaacaacaACCTCTTGAGACTTTGTGGTAGGATACAAGACTTACGCGGACTTTTTAACAATACATTTGACGGATTTATTTATAAGACCGATCATTTACATAAAGAAGAAGTATGCCTCATCTGTCAGTGCTTCGTTTTATGGCCGTGTATCTCATGCTCTTTGGATACCTTGGGGATGCTTATGCCGGGGCGGTTTTAATGAACTCTAATGCCATCAAGAACTTGCCTGGTGGCAACGACACGGTTAGTCCGAGCCCACGCCCGTCTTCACCAGATAGCGACAGGCAGAAAGCAGTCGTGGACACTTTGCAGCTTATTTGCACATATGATGATGAGTGTGGGACCGATGAATTCTGCAATGATATCCGAGGCGCGTGCCTCCCATGCCGAAAGATCCGGAAGCGGTGCGCAAGGGATTCAGTGTGCTGCGCTGGGAACCGCTGCATCAACGGTGTTTGTCAGGCCAGTGATCAAGATGCTGAAGCTGTAGTCACTACCAGTGTTGGGAATAGGCAGAACAACACCATGGAACACCATGGCAAGAGACTGCCTCTGCCCCAAGGTCAACCACAACATTCTGTCAAAGgTCGGGAAAGTGACAACTGCCTGAGGTCCTCTGACTGCTCTGAGGGTCTGTGCTGTGCACGCCACTTCTGGTCTCGTATCTGTAAGCCGGTGCTGACGAAGGGCCAGGTGTGCACGCGTCACCGTAGGAAAGGTGGCCATGGCCTGGAGCTGTTCCAGCGCTGCGACTGTGGAGGTGGTCTCTCCtgcagaccagagagaggagagaaagacccTGGAGTCAGCAGAACCGCAGACCGGAACCTACACACCTGCCAGAgacgcggacacacacacaccctgaacaTACACACTGCCTAAGATGCTGACACACTGCCCATAACCTACACATTTGTCAGAGATGctggcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacctggaAAGGAAGAACAGATTCCAGAGAAAAGTGATACGCTCAGAGGGATGCGATGGTGTAAAATGGACCAATCTGATTCCCCTGGATGCTGGAGGATGCCGAATAAGGAAGTTGTCATTGGATGTGTCTTCGAAAGATCGATAGGTCATTAAAAATGGCAGAGTTGTTTTGTTTCTCTTTTTATGAAACTAACCTTGATTATTGCAGTAAATTACTGTATTGTAAATACTATACTGGAGGTGGTACTTAACTGAGCTATTGAATTCTGTCAACACCAGTATGATAAATAAGAACACGGTGCTGCGTGGTTCGTTTCCAATATTGTAAATGTGTACACAATATGATTtatattgttatttactgtttaatgtaaaatgtatatttgttttatttacttgtaaaaaaaaaaaaaagtacagatATTTGTTTTATTAAAACATTATAGTA
>TU90117
cacacacacacacacacacacaccacctggaAAGGAAGAACAGATTCCAGAGAAAAGTGATACGCTCAGAGGGATGCGATGGTGTAAAATGGACCAATCTGATTCCCCTGGATGCTGGAGGATGCCGAATAAGGAAGTTGTCATTGGATGTGTCTTCGAAAGATCGATAGGTCATTAAAAATGGCAGAGTTGTTTTGTTTCTCTTTTTATGAAACTAACCTTGATTATTGCAGTAAATTACTGTATTGTAAATACTATACTGGAGGTGGTACTTAACTGAGCTATTGAATTCTGTCAACACCAGTATGATAAATAAGAACACGGTGCTGCGTGGTTCGTTTCCAATATTGTAAATGTGTACACAATATGATTtatattgttatttactgtttaatgtaaaatgtatatttgttttatttacttgtaaaaaaaaaaaaaagtacagatATTTGTTTTATTAAAACATTATAGTAACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611112.2 False 1568 mRNA 0.46 4 73134653 73136850
TU90117 True 478 lncRNA 0.34 1 73134648 73135125

Neighbor

gene id symbol gene type direction distance location
plek LOC106577000 coding downstream 516435 72612186 ~ 72618218 (-)
LOC110532660 LOC107688027 coding downstream 527031 72606735 ~ 72607622 (-)
LOC110532653 bfsp1 coding downstream 608932 72508958 ~ 72525721 (-)
LOC110528856 gtpbp2 coding downstream 778872 72330335 ~ 72355781 (-)
LOC118965494 LOC106576993 coding downstream 853409 72276698 ~ 72281244 (-)
LOC110528926 LOC106577002 coding upstream 3614 73140464 ~ 73290110 (-)
LOC110528949 LOC106577006 coding upstream 186602 73323452 ~ 73373737 (-)
LOC110529015 LOC106577089 coding upstream 410248 73547098 ~ 73548953 (-)
sfr1 sfr1 coding upstream 500785 73637635 ~ 73639525 (-)
slka slk coding upstream 538808 73675658 ~ 73711294 (-)
G81567 NA non-coding downstream 14564 73119888 ~ 73120089 (-)
G81565 NA non-coding downstream 15550 73118849 ~ 73119103 (-)
G81530 NA non-coding downstream 39939 73094442 ~ 73094714 (-)
G81524 NA non-coding downstream 42914 73091533 ~ 73091739 (-)
G81275 NA non-coding downstream 374924 72716529 ~ 72759729 (-)
G81866 NA non-coding upstream 59826 73196676 ~ 73203813 (-)
G81867 NA non-coding upstream 60240 73197090 ~ 73204328 (-)
G81868 NA non-coding upstream 60697 73197547 ~ 73204796 (-)
G81949 NA non-coding upstream 142465 73279315 ~ 73279579 (-)
LOC110528794 LOC106576993 other downstream 882735 72202814 ~ 72251918 (-)
G80957 NA other downstream 923564 72207929 ~ 72211089 (-)
G79904 NA other downstream 1390844 71743045 ~ 71743809 (-)
G79700 NA other downstream 1664194 71469435 ~ 71470755 (-)
G79616 NA other downstream 1748130 71321950 ~ 71386523 (-)
G83429 NA other upstream 1435597 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 1835362 74971772 ~ 74975108 (-)
G84713 NA other upstream 2391493 75528343 ~ 75528903 (-)
G85866 NA other upstream 3196618 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 3230443 76324531 ~ 76399997 (-)

Expression


Co-expression Network