LOC110528949 (LOC106577006)


Basic Information

Item Value
gene id LOC110528949
gene name LOC106577006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73323452 ~ 73373737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611124.2
agaaggaaggaggaggagtctgagaaagagagagccttgttcagaggaactgCTGCAGagctgttctttctctctcagagCCACATGTGTTTTGTGATTAGAGCAGGTGAAGAATGAAGAGGAGGCACAGGGGAGATAGGGGAAAGAGGCATACGGGAACCCCATTGAAGTAATGAGGTGAAGAAGCACAAAGCAGGCTAAGTCTGAGACTGGGTCCTCCGGGTGTCCCCATCCAATGCTCCTGAAGCGCCATGAGCCACAGCTGGGGACGATTTACTACTCCATAGACTGCCATATCTCCTGCAgcctttccctctctgtcctcggGCCCCCCTTGGCCCCTTCCCCCCTTCCCCATTGGCCGAGATGAAGAAGGTGGGGCAGTGGTCGGCGGAGGAGGTGTCCCATTGGCTGAGCGAGGAGGGGATGCAGGAGTACGGCGACTCCCTCCTGCAGGCGGACGGCCCCGTCCTGCTGCGGCTCACCCCGGATGACTTCCTGACCCCGCCCCTCTCACTGGTCTCCTCAGACAATGGGCGGCAGCTCTTGGAACGGCTGGAGACCCTACGGATCGAGCATCACATTGAGGAGCACCAAAAAAATGGCCACGCCAATGGCCATGGGAGGCTGCCCAACGGCACTGCCAAGCCCCTGCGGAAAGGTTCGCTGGGGCTTAATGGCTTCCGGAAGGAGATGGTCCAAATCCCCATCCCCATGTTGGAGACTGAACGCTCTGGGTTCCCCCAGGAGTGGGGCAAGACAGGTGTAGCGTTCCTCTACGCAGTTTGCTGCTTTGTGACTACCACTGTGGTCATCTCGGTGGTCCATGAGAGGGTGCCGGCCAAGGAGCATACCCCACCGCTGCCCGATAAGTTCTTTGACATTTTTGACCGGGTGGAGTGGGCCTTCTCTATCTGTGAGATCAATGGCATGCTGCTGGTGAGTCTGTGGCTGCTGCAGTGGACCCTGCTCAAGTACAGATCAATAATCATCCGTCGGTTCTTCTTCATTGTGGGTACCCTCTACCTGTACAGATGTGTCACCATGTACAtaaccactctgcctgttccAGGGATGCACTTCCAATGCTCTCCAAAGCTATTTGGGAACTGGGAGGTTCAGATGAGGAGGATCATAAAGCTGATCGCCGGCGGAGGCCTGTCAATCACCGGCTCCCACACCATGTGTGGAGACTACCTGTACAGCGGCCACACAGTCATTCTAACACTATCATATCTCTTTATCAAAGAGTATTCCCCTAAGAGGTTTTGGTGGTACCATTGGTTCTGCTGGACTCTGAGTGCAGTAGGCATCTTCTGCATCCTGCTGGCCCATGACCACTATACTGTGGACGTGGTGGTGGCTTATTTCATCACAACACGTCTCTTCTGGTGGTACCACACCATGGCCAACCAGCAGGCGCTGAAAGAGACGTCCCAGAGTAACCCATTCTCCAGAGTCTGGTGGTTTCGACTGTTCCAGTACTTTGAGGGAAACGTCAAGGGCATTGTCCCTCGAAATTATCAGCTGCCGTGTTCATGGCGATCGTCTCCGTGGAGCCATGGGGTAAAGTACAGCAAAGTGGATACCCAGTGACCCAGGTCACGTGAGGGGTGGGAGCTGAGCGAGAGACCTCCTGAAGTTGTGATCGTCTGAAGGAGATGGTGTCGTGTTGCCAAGCCAGTACTGTTCCCTTGACTTGTTGGGCTCATTTTAGAAAAATCCCAGTTCTGGCTAGCACTGTGACCATAGTCTTACTTTAGcactacaaaaaaaaatattttgggaatTTTGGTTTTTGAAAACTTAGCACACTACTTTGATCATGTATTTTTGCTTGGGACACTTTGCAATGTTTCGTTGACTACAGCAGATCTGGTTAATATTTAAATATTATATTTagattatttttgtttttttgttttgaccATGGCTGTAACAAGTAGTTTAGACTCTTTTCCTCTGCAAATAGTTTGAGAAATTCTGGTCCGATAAGGTCTACCAAGTGCAAAACATGTCACTGAAATGTTTATTTGATAACCAAAATGCCATACATTGTCTGGGGGAGTTTTagatgcaaaacatttttttcttttttaacaaattacttTTCTGTCAACTACAACGTGGCAATGGTGCAAAAAAAGTTTTTTTCTAACAATTGCAACTTTATTTTTCAAAACAAATAAtgtccccaaaaatatttttagaTTTGTACCTTTTTCAAGATTGAATGCTGAAAGCAGAAGAATCTGTGGTATTTAGAATTGTTCCAGTGCCTTCCTTAGCTTGATTGTACTATGTGTCTGTGTTCCTCTGCCTCCgcgtgtctgtctgactgcccaCAAGGTCGGCATGAAGCGGTTCCAAATGATCGTTCAAGTCCTGTTCGCATGAATGTAAGAATAATGATGCCAGCCTTATATGGTAATTAGTCTTCCCAAAACCAAAAACATTGAGATGAGTGAAATATCCTGTCAATTTATTTATGTTTTCATATATAATATTTCTTTCCATAGCCGGTGATGTTATAGCAGTTAATGAAGGACCGTTAAGTTGTTTGGTTATGTCCTCATCATTTACTGACCCTTAGCCAGTCTTGAACGTGTTCTAAAAAGCTCATTGACTTGCTAATAATCTTGTATCAAAGGTTAGTTGCTAACTTTGAAAGAATGATGGAAACCCTCTGGACCTCAAGGACTGTACTGGAGTTGTGCAGCACACCTACAAGTCTTTGTACGAGATACTGAATCCCTATTTTGTCAAACAGTGTTCTCGAAACAGACCCAGAAAATACATCTTACTGGCTGTTGTCGACTTGGCCAATAGAGCAGTGTGTTCCTGAATGCAGCCTGCCAGAATGTCTTACTGATAAATAGGGCCGGAAGGACACCAGTATCACTATTTTTTCCGTTGCAAAAATGAAAACCCGAAGCAGgctaactctttggtccttttaaAAACCTACTGTATGTTAAATATTGTTTGCTatagctcccgagtggtgcagcagtctaaggcactgcatctcagtgctagaggtgtcactacatacaccctggttcgaatccaggctgtatcacaaccggacgtgattgagagtcccatagggcggcgcacaattggcccagcgtcgtctgtgtTTGGCtgttgtaggccgtcattgtaaataatcatttgttcataactgacttgcctagttaaataaaggtaaatttaaataaatagcttgggaaatatatacatttgactgtagatggcatcataatgatgtttgtttctgaCAGTTTTCCTGAAGAATTGAATCCCGCTTCGTGCTTTGTTTCCCTGCCACGATACTGACGAGTATATACTGGTATCGTCCTGGCCCTACTGATAAAGACAAGCTTCTTGTGATTATTTATCTGTCTTATTGACATACATGTTGATCTTAATGCAGTTCAGTGGTGATATGCCATCTTTGAACTTTGTCAAATGTATAGGGCTTTtcaatgttgacttgtttaaaaaCAGAAGTTTGAGGCAAAGTGTATTGGTACTGTCCTGAACTACATTGGCTGGCAAGTTTGCAATGCCAAAAATAGTTTAGTCACAATTACCTACTAAAGAAGCTGACAAATTGTACAAAGCCAATGGGGTTATCAAGTGGGCGAGGGGGCCAAATGCACAGTACTGGGGATCTAATGTACGGACAAATCCACACAACAGACAACGTACTGATTACCATGAATGTGAAAATGGTCTCTAATGATCCTCGATACACTTGTGCATTAAAATGATTTTGTGTTACCATTCCAACAGCACAACATGTTTTCTCCTGAAGTAGAGCTGGTTCGAGTAAGAAATTACCTCAGTTCAGCTGTCTGACTGGAGAGACTGAACTGATAATAACATGGCACTTTCTGTTATGAAAATGCAGCATGGCCCAGTTTAATAGAACTGAGTGGTGAGACAGGACAGGTTAATATAATGGACCTCAATTGTATTTATTCTTTAGAAAGAGCTCTAGCCTCTAATCATTGTTGTACATTTTTACGTCATGTTTTCTTTTGTGTGTCCTAAAGAGTAGCAGTACTAAATCGATAATGATGACATAATTTGAATGCTGAATTGATGTGCTATTTCTTGTAATGATGAATGTTTTGACAAATTGTAATTTGGCCTCTTAGCTTGAGGAGGAGGCAGCGGTGGTTGTCCTCTAAAGAAAAGGTTGGGATACCTTCGTTCAAGGGGTATAAGGTCGTATGTTTATGGCTATATTAAAAGTGCATAAACTGTAATGAGTTTAGCATGTACCCATGTGAGACGAAATACTGTTCTCATTGACAGCTGCGGCTATGTCAAAAATGTATGAATGTGAATGGCAGATCAGATGTCTCTATATAGGCGTATTGATGTAAACCTCTCTAAAGCCATCTACAGCTGTAACATGAGAGGAGTTTGGGGATATTCCCCTTGAGCCCCTTCAATCCAGACATTTCTCTCTTAAAAAGGAAGCCGGTAGTGGTGGAATGTTTGAACCATTTCTGAAATCCTTCGACGTTTGATGCACGCACATTAAGGCCATATTTTGACTTGAAGTGCACACGCCTAACTTAAACTGCCTAGTGAAAGTCGGAATATGTGTcttgataaatatatatatatacacagtaccagtaaaaagtttggacaccg
>XM_021611119.2
TAGCTAGCTTCACATAGGTCAAAACCACCTACCCACGAAAACAACCCCAAACCACCCCGACTAACGTTACGTTCAACGGTATTGCATTTATATCGTCTACCCATCGGAATATAAGGGAACCTAAAACGATTTATTTTGAAATTAAGAATATTTTTCATGTAATAATGTACGCCGGATAGCTACGCCACATTCCTCTGATAGCTACAAGTCGCCAATGTGATGTTATATGCGGAAAGAGGCATACGGGAACCCCATTGAAGTAATGAGGTGAAGAAGCACAAAGCAGGCTAAGTCTGAGACTGGGTCCTCCGGGTGTCCCCATCCAATGCTCCTGAAGCGCCATGAGCCACAGCTGGGGACGATTTACTACTCCATAGACTGCCATATCTCCTGCAgcctttccctctctgtcctcggGCCCCCCTTGGCCCCTTCCCCCCTTCCCCATTGGCCGAGATGAAGAAGGTGGGGCAGTGGTCGGCGGAGGAGGTGTCCCATTGGCTGAGCGAGGAGGGGATGCAGGAGTACGGCGACTCCCTCCTGCAGGCGGACGGCCCCGTCCTGCTGCGGCTCACCCCGGATGACTTCCTGACCCCGCCCCTCTCACTGGTCTCCTCAGACAATGGGCGGCAGCTCTTGGAACGGCTGGAGACCCTACGGATCGAGCATCACATTGAGGAGCACCAAAAAAATGGCCACGCCAATGGCCATGGGAGGCTGCCCAACGGCACTGCCAAGCCCCTGCGGAAAGGTTCGCTGGGGCTTAATGGCTTCCGGAAGGAGATGGTCCAAATCCCCATCCCCATGTTGGAGACTGAACGCTCTGGGTTCCCCCAGGAGTGGGGCAAGACAGGTGTAGCGTTCCTCTACGCAGTTTGCTGCTTTGTGACTACCACTGTGGTCATCTCGGTGGTCCATGAGAGGGTGCCGGCCAAGGAGCATACCCCACCGCTGCCCGATAAGTTCTTTGACATTTTTGACCGGGTGGAGTGGGCCTTCTCTATCTGTGAGATCAATGGCATGCTGCTGGTGAGTCTGTGGCTGCTGCAGTGGACCCTGCTCAAGTACAGATCAATAATCATCCGTCGGTTCTTCTTCATTGTGGGTACCCTCTACCTGTACAGATGTGTCACCATGTACAtaaccactctgcctgttccAGGGATGCACTTCCAATGCTCTCCAAAGCTATTTGGGAACTGGGAGGTTCAGATGAGGAGGATCATAAAGCTGATCGCCGGCGGAGGCCTGTCAATCACCGGCTCCCACACCATGTGTGGAGACTACCTGTACAGCGGCCACACAGTCATTCTAACACTATCATATCTCTTTATCAAAGAGTATTCCCCTAAGAGGTTTTGGTGGTACCATTGGTTCTGCTGGACTCTGAGTGCAGTAGGCATCTTCTGCATCCTGCTGGCCCATGACCACTATACTGTGGACGTGGTGGTGGCTTATTTCATCACAACACGTCTCTTCTGGTGGTACCACACCATGGCCAACCAGCAGGCGCTGAAAGAGACGTCCCAGAGTAACCCATTCTCCAGAGTCTGGTGGTTTCGACTGTTCCAGTACTTTGAGGGAAACGTCAAGGGCATTGTCCCTCGAAATTATCAGCTGCCGTGTTCATGGCGATCGTCTCCGTGGAGCCATGGGGTAAAGTACAGCAAAGTGGATACCCAGTGACCCAGGTCACGTGAGGGGTGGGAGCTGAGCGAGAGACCTCCTGAAGTTGTGATCGTCTGAAGGAGATGGTGTCGTGTTGCCAAGCCAGTACTGTTCCCTTGACTTGTTGGGCTCATTTTAGAAAAATCCCAGTTCTGGCTAGCACTGTGACCATAGTCTTACTTTAGcactacaaaaaaaaatattttgggaatTTTGGTTTTTGAAAACTTAGCACACTACTTTGATCATGTATTTTTGCTTGGGACACTTTGCAATGTTTCGTTGACTACAGCAGATCTGGTTAATATTTAAATATTATATTTagattatttttgtttttttgttttgaccATGGCTGTAACAAGTAGTTTAGACTCTTTTCCTCTGCAAATAGTTTGAGAAATTCTGGTCCGATAAGGTCTACCAAGTGCAAAACATGTCACTGAAATGTTTATTTGATAACCAAAATGCCATACATTGTCTGGGGGAGTTTTagatgcaaaacatttttttcttttttaacaaattacttTTCTGTCAACTACAACGTGGCAATGGTGCAAAAAAAGTTTTTTTCTAACAATTGCAACTTTATTTTTCAAAACAAATAAtgtccccaaaaatatttttagaTTTGTACCTTTTTCAAGATTGAATGCTGAAAGCAGAAGAATCTGTGGTATTTAGAATTGTTCCAGTGCCTTCCTTAGCTTGATTGTACTATGTGTCTGTGTTCCTCTGCCTCCgcgtgtctgtctgactgcccaCAAGGTCGGCATGAAGCGGTTCCAAATGATCGTTCAAGTCCTGTTCGCATGAATGTAAGAATAATGATGCCAGCCTTATATGGTAATTAGTCTTCCCAAAACCAAAAACATTGAGATGAGTGAAATATCCTGTCAATTTATTTATGTTTTCATATATAATATTTCTTTCCATAGCCGGTGATGTTATAGCAGTTAATGAAGGACCGTTAAGTTGTTTGGTTATGTCCTCATCATTTACTGACCCTTAGCCAGTCTTGAACGTGTTCTAAAAAGCTCATTGACTTGCTAATAATCTTGTATCAAAGGTTAGTTGCTAACTTTGAAAGAATGATGGAAACCCTCTGGACCTCAAGGACTGTACTGGAGTTGTGCAGCACACCTACAAGTCTTTGTACGAGATACTGAATCCCTATTTTGTCAAACAGTGTTCTCGAAACAGACCCAGAAAATACATCTTACTGGCTGTTGTCGACTTGGCCAATAGAGCAGTGTGTTCCTGAATGCAGCCTGCCAGAATGTCTTACTGATAAATAGGGCCGGAAGGACACCAGTATCACTATTTTTTCCGTTGCAAAAATGAAAACCCGAAGCAGgctaactctttggtccttttaaAAACCTACTGTATGTTAAATATTGTTTGCTatagctcccgagtggtgcagcagtctaaggcactgcatctcagtgctagaggtgtcactacatacaccctggttcgaatccaggctgtatcacaaccggacgtgattgagagtcccatagggcggcgcacaattggcccagcgtcgtctgtgtTTGGCtgttgtaggccgtcattgtaaataatcatttgttcataactgacttgcctagttaaataaaggtaaatttaaataaatagcttgggaaatatatacatttgactgtagatggcatcataatgatgtttgtttctgaCAGTTTTCCTGAAGAATTGAATCCCGCTTCGTGCTTTGTTTCCCTGCCACGATACTGACGAGTATATACTGGTATCGTCCTGGCCCTACTGATAAAGACAAGCTTCTTGTGATTATTTATCTGTCTTATTGACATACATGTTGATCTTAATGCAGTTCAGTGGTGATATGCCATCTTTGAACTTTGTCAAATGTATAGGGCTTTtcaatgttgacttgtttaaaaaCAGAAGTTTGAGGCAAAGTGTATTGGTACTGTCCTGAACTACATTGGCTGGCAAGTTTGCAATGCCAAAAATAGTTTAGTCACAATTACCTACTAAAGAAGCTGACAAATTGTACAAAGCCAATGGGGTTATCAAGTGGGCGAGGGGGCCAAATGCACAGTACTGGGGATCTAATGTACGGACAAATCCACACAACAGACAACGTACTGATTACCATGAATGTGAAAATGGTCTCTAATGATCCTCGATACACTTGTGCATTAAAATGATTTTGTGTTACCATTCCAACAGCACAACATGTTTTCTCCTGAAGTAGAGCTGGTTCGAGTAAGAAATTACCTCAGTTCAGCTGTCTGACTGGAGAGACTGAACTGATAATAACATGGCACTTTCTGTTATGAAAATGCAGCATGGCCCAGTTTAATAGAACTGAGTGGTGAGACAGGACAGGTTAATATAATGGACCTCAATTGTATTTATTCTTTAGAAAGAGCTCTAGCCTCTAATCATTGTTGTACATTTTTACGTCATGTTTTCTTTTGTGTGTCCTAAAGAGTAGCAGTACTAAATCGATAATGATGACATAATTTGAATGCTGAATTGATGTGCTATTTCTTGTAATGATGAATGTTTTGACAAATTGTAATTTGGCCTCTTAGCTTGAGGAGGAGGCAGCGGTGGTTGTCCTCTAAAGAAAAGGTTGGGATACCTTCGTTCAAGGGGTATAAGGTCGTATGTTTATGGCTATATTAAAAGTGCATAAACTGTAATGAGTTTAGCATGTACCCATGTGAGACGAAATACTGTTCTCATTGACAGCTGCGGCTATGTCAAAAATGTATGAATGTGAATGGCAGATCAGATGTCTCTATATAGGCGTATTGATGTAAACCTCTCTAAAGCCATCTACAGCTGTAACATGAGAGGAGTTTGGGGATATTCCCCTTGAGCCCCTTCAATCCAGACATTTCTCTCTTAAAAAGGAAGCCGGTAGTGGTGGAATGTTTGAACCATTTCTGAAATCCTTCGACGTTTGATGCACGCACATTAAGGCCATATTTTGACTTGAAGTGCACACGCCTAACTTAAACTGCCTAGTGAAAGTCGGAATATGTGTcttgataaatatatatatatacacagtaccagtaaaaagtttggacaccg

Function

NR:

description
phosphatidylcholine:ceramide cholinephosphotransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611124.2 False 4677 mRNA 0.44 6 73323452 73343583
XM_021611119.2 True 4767 mRNA 0.44 6 73323452 73373737

Neighbor

gene id symbol gene type direction distance location
LOC110528926 LOC106577002 coding downstream 33342 73140464 ~ 73290110 (-)
LOC110528940 LOC106577088 coding downstream 186602 73134648 ~ 73136850 (-)
plek LOC106577000 coding downstream 705234 72612186 ~ 72618218 (-)
LOC110532660 LOC107688027 coding downstream 715830 72606735 ~ 72607622 (-)
LOC110532653 bfsp1 coding downstream 797731 72508958 ~ 72525721 (-)
LOC110529015 LOC106577089 coding upstream 173361 73547098 ~ 73548953 (-)
sfr1 sfr1 coding upstream 263898 73637635 ~ 73639525 (-)
slka slk coding upstream 301921 73675658 ~ 73711294 (-)
LOC110529113 neurl1 coding upstream 452687 73826424 ~ 73886957 (-)
LOC110529136 LOC106608714 coding upstream 638254 74011991 ~ 74062308 (-)
G81949 NA non-coding downstream 43873 73279315 ~ 73279579 (-)
G81868 NA non-coding downstream 118656 73197547 ~ 73204796 (-)
G81867 NA non-coding downstream 119124 73197090 ~ 73204328 (-)
G81866 NA non-coding downstream 119639 73196676 ~ 73203813 (-)
G81993 NA non-coding upstream 7870 73381607 ~ 73381822 (-)
G81996 NA non-coding upstream 26409 73400146 ~ 73400520 (-)
G82018 NA non-coding upstream 55069 73428806 ~ 73429012 (-)
G82021 LOC106577009 non-coding upstream 75095 73448832 ~ 73450435 (-)
G82030 NA non-coding upstream 77989 73451726 ~ 73451941 (-)
LOC110528794 LOC106576993 other downstream 1071534 72202814 ~ 72251918 (-)
G80957 NA other downstream 1112363 72207929 ~ 72211089 (-)
G79904 NA other downstream 1579643 71743045 ~ 71743809 (-)
G79700 NA other downstream 1852993 71469435 ~ 71470755 (-)
G79616 NA other downstream 1936929 71321950 ~ 71386523 (-)
G83429 NA other upstream 1198710 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 1598475 74971772 ~ 74975108 (-)
G84713 NA other upstream 2154606 75528343 ~ 75528903 (-)
G85866 NA other upstream 2959731 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 2993556 76324531 ~ 76399997 (-)

Expression


Co-expression Network