LOC110529015 (LOC106577089)


Basic Information

Item Value
gene id LOC110529015
gene name LOC106577089
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73547098 ~ 73548953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611166.2
TGCAGACTGAAGACCATTCGATCAGTAAAGATGGAGCCCTCACTGgagtcctcctctcctttcctgctACAGACTTTATGGGACAAGATAAGAGCACAAGAAGACTTTCTCCGCTCTCCCTTGTTCCCTGTCCTGTTCTCCATGACACTCTATCTGAGCTGCTGCCTGCCTTACCTGTGCCTGGACACCCTGTCCTCCAGAGTAGCCCTGGTGCACCGCTACAAGATTCAGTCACAGAGCAGGGTGACCTGGGCAATGGCATGGAGCTGCCTGGCTACCTCCCTGCACACCCACGCTGTGTTCATTTTCCCCCTCAGTGTTCTGCACTGGTACTGGAGACCAGTGGTCCTCCCTGCCCAAGCCCCTGGGTCTCTTCGTGTGGCCTGGGATGTGTTAGCCTGTctccttctctttgacctgcaGTACTTTGTGTGGCACGTGCTGCACCACAAGGTGCCCTGGCTCTACCGGACTTTCCATAAGGTGCACCACCGCTACACAGCCACCTTCGCCCTGACCACAGAGCACTCTGGGATCTGGGAGACCCTGAGTCTGGGCTTGTTTGCTGCAGTGAACCCTAACCTGCTGGGCTGCCACCCGCTCACCAAGATGTTCTTCTTCACCCTGAACATCTGGCTGTCTGTGGAGGACCACTCAGGTTATGACCTGCCCTGGGCCCCTCACAGACTGGTACCCTTTGGGCTCTATGGCGGATCTCCACACCACGACCTCCACCATCTCAAGTTCATGGTCAACTACGCACCCTACTTCACACACTGGGACAGGCTGTTTGGCTCGCTGCTGCATACAGACAAACCAGACACGTTTGATGTAGATGTGTTGGATGCTTCAAAAAGATGTGATACAGCATCAAGTGGTGTGACTGATGTAAGCCATGCACCAGTGTATGAGACTACACAAAGCTGTGTGAAAGACTATGAGGTACAGTTCAGAGGAAAATGAGGACCTGTTCTCTGactgttatttggatttttatgaataatgactaaattatgtatacatttaacttAGAACGAAACTAAACAGAATAGTACTATGTCactgtatgaatgtatgaatcTTATCTCTGTTTTTAAAAATGGCAAAACTGTGAAGAAAAAAATTGAGAATCATGTGACCAATGGACTATTACTGTAGCTGCTTCAATACAATgaatttatgtatgtgtgtgtatatgagtgtataTATGGGTGATTCTGCAACTTTGGCCACTTTGGCCGTGCAAACTTTCAGAAAGTAAAACTTATTCAAACACCATTTTACCAGTATTGTACTTGCCTTTTATTTGTCTAGAAACTATATCTGATAATGCCTGCGATCGTACTATTCaggaatgtatatatttttgtcccttttcccagacagccatagacaaaTGTCATTTCCATCACGTCATTAAACATCCATTTTTGTTGAAAATCAAATATCATACAATTGATTTATGACGGAGTTCTTATACATTTGTACATGAACTTGTATTGAATATTATTTTAAGTGATTTTTAAGGTTTTCCTAATATGAATAATTCAACACGATGCCTGAATGTATAAACTTGCCTTGCTGACAgctgaaaacatttatttatcatGAAAAATAAGATATTTCCACCCAACCTTTTTGTGAGATTATGATAATAACCGTATGATTTCCATATCTAAAAcaaataaatgtatgtaaattataCAGAATATACTAATTTACCTCAAAAATATGGGTTGtgatggaaatgacaaggtgtggtggaaatgacttctatgtaaaaataaaacatgaaaacaAAGTGAACAGCCTGGATTTCACTGGTGTATTTacacaggtactgtagttctcTGCAA
>TU90664
ACCAGTATTGTACTTGCCTTTTATTTGTCTAGAAACTATATCTGATAATGCCTGCGATCGTACTATTCaggaatgtatatatttttgtcccttttcccagacagccatagacaaaTGTCATTTCCATCACGTCATTAAACATCCATTTTTGTTGAAAATCAAATATCATACAATTGATTTATGACGGAGTTCTTATACATTTGTACATGAACTTGTATTGAATATTATTTTAAGTGATTTTTAAGGTTTTCCTAATATGAATAATTCAACACGATGCCTGAATGTATAAACTTGCCTTGCTGACAgctgaaaacatttatttatcatGAAAAATAAGATATTTCCACCC

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611166.2 False 1856 mRNA 0.43 1 73547098 73548953
TU90664 True 349 lncRNA 0.31 1 73547323 73547671

Neighbor

gene id symbol gene type direction distance location
LOC110528949 LOC106577006 coding downstream 173361 73323452 ~ 73373737 (-)
LOC110528926 LOC106577002 coding downstream 256988 73140464 ~ 73290110 (-)
LOC110528940 LOC106577088 coding downstream 410248 73134648 ~ 73136850 (-)
plek LOC106577000 coding downstream 928880 72612186 ~ 72618218 (-)
LOC110532660 LOC107688027 coding downstream 939476 72606735 ~ 72607622 (-)
sfr1 sfr1 coding upstream 88682 73637635 ~ 73639525 (-)
slka slk coding upstream 126705 73675658 ~ 73711294 (-)
LOC110529113 neurl1 coding upstream 277471 73826424 ~ 73886957 (-)
LOC110529136 LOC106608714 coding upstream 463038 74011991 ~ 74062308 (-)
LOC110529148 NA coding upstream 533986 74081285 ~ 74085971 (-)
G82039 NA non-coding downstream 57995 73482607 ~ 73489103 (-)
G82038 NA non-coding downstream 60212 73459791 ~ 73486886 (-)
G82035 NA non-coding downstream 89017 73457768 ~ 73458081 (-)
G82033 NA non-coding downstream 90848 73456003 ~ 73456250 (-)
G82030 NA non-coding downstream 95157 73451726 ~ 73451941 (-)
G82165 LOC106577091 non-coding upstream 2845 73551798 ~ 73610100 (-)
G82176 NA non-coding upstream 15875 73564828 ~ 73606712 (-)
G82213 NA non-coding upstream 72385 73621338 ~ 73621803 (-)
G82217 cfap43 non-coding upstream 77405 73626358 ~ 73626719 (-)
G82234 NA non-coding upstream 96563 73645516 ~ 73645939 (-)
LOC110528794 LOC106576993 other downstream 1295180 72202814 ~ 72251918 (-)
G80957 NA other downstream 1336009 72207929 ~ 72211089 (-)
G79904 NA other downstream 1803289 71743045 ~ 71743809 (-)
G79700 NA other downstream 2076639 71469435 ~ 71470755 (-)
G79616 NA other downstream 2160575 71321950 ~ 71386523 (-)
G83429 NA other upstream 1023494 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 1423259 74971772 ~ 74975108 (-)
G84713 NA other upstream 1979390 75528343 ~ 75528903 (-)
G85866 NA other upstream 2784515 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 2818340 76324531 ~ 76399997 (-)

Expression


Co-expression Network