LOC110529026 (LOC106577090)


Basic Information

Item Value
gene id LOC110529026
gene name LOC106577090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73551618 ~ 73553748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611170.2
CACTCATTTGCTCTTGAAACTCAGAGACGACAAGATGGCTTTCTCTTGTCCAACTAAGAGAATGGCTCAGACCTCCTTGAAAATTAGGCTGCAGGGTTTGGAATGCCACTTCACCTGGAAGCTGGACGACAGCAGATCTAAACTGGAAAGTCTCAGACATACCCTGATAGATATCATCAGCAGCGAGGGGGTTCTCTGTTCCTGGACGGGTCATCTGTACAACCTCCTGGCTTACCTACACCACGCTTTGGGCTCCACAGAGGACGCTCTTCAATGCCTGAAGAAGGCTGAAGAGGCCATTCGCCTAAACAGCCCAGACGACGTGGAGCTAAGTCTAGTGGTCCACTATGGGAACTTGGCCTGGGTGCACTATCACCAAGGGGAGCTGACAGAGAGCCAGACCTATGTGGAGAAGGTGGGGAGACTACTGCGGGACAACCCCTCACCCTGCCCAGGTGTAGTGTGGGGAGAAAGGGCCTGGACTTTGAATAAGTTTGATGTAAGCAAGAGGAAGGCAGCGGTATATTGTTTCCGGATGGCCTTGAAAGGGGACCCTGAGAACAAGGTGCTGCGCTGTGGTTATGCCATAGCATTTAGTAAATCTTTTGAAAATAAAGACATTACCCCGAGGCTGCGATCTGAGATGTTGGAGCACCTACGGATTGCTAGAGAATTGGATCCAGAACATTTGACCATCACAGTGATGTACCTGCAGAGGCTTGCAGATAGCGGCCAGGTTGAGGAAGCACGTAAACTTGCAGAGGAAGTGATAGAGAAGCCTTTGGACAGCTTTGGTGGATTTGGACTCTTACTATCATTTTTCAGAGATTACGTCTCTCATGATTCAAGCATTGACCTGGCAAGAAAGACCCTGGAGAGACACCCTGATTCACGCCAACTGAAAAAGCGTCTTGCGCAGTGTTACAAATGGAAGATTTTCTCTCCGGAAGAGAAAAGGAACCCAATGAGGCATATTCTGATTGAAAATGCAGTCAGCCTTTATGAAGAGGTGGTCACACTCTACCCAAAATCCCTTGCTGTAAAACTGGAACTGTCTTCCATGTACAAAGAATCTGGCAGACTTGATAGAGCAGATAAGATATTCGAGGACCTGCTTCTTGAAATAGAAGCAATGGATCCACAGGATTTACAAAAATTCTACAACAGGTATGCCCAACATCTGTTTTATGCCAAACACGATGCTTCCAGGTCAATTGATTTCCACAAGAAGGCAGTAGAGATTATGCTACCCACTGGCCAACGTGACAGCAGTATTCGTGTTTTGTTGTCAAATGTCCATAACGGAGGAGACAGAGCTGAGGAAATTGTTGACTTTCTGGATGGACTTGATAGAGATGGTGCTGTCAGCCAGTTCTAGACCTTTTTTTTACAATAAAGGCTTGAATTAACCAGAACTGCTTGTCGAATCAGTCAAATTTGCATAACCTGTTTATGATTGATTCATGTGGAAAATATATTCACTATACCACTAGGACAAATCTAGGGCAATCTAGTACAAATTTTAATTTAGTTCTAACTGAATACCTTCGTATTCCAAATGTCTGTGCTCAATTTTACTACTGGGATTGCTGAGAGATGCATGATCATCAATACTAACACTGGAAAGGAAATTCAAGGCTGAGAGTAAAGTCATAAATATGTAGGCCTAACAGGACAATATCTGTCTGGAATCCACATTTTGAATTGAGTCTCTACAAGTTAACTGTGGACAATGTACTGCAGACAAACtaatatgttattttaaatgtttcATTATAGAGTAGAGAGGTCCAGTATAGCCTCACAGACAGACTATCCAGAACAATAtgatcatatttattttattttcttcacACTGGGCACAATAGATAGaaaatgaaaatgtatgtaatgtgtAATATTATACTGTCTAATATCTTGTAAGTTCTTGTGAAAATAAAGTTGTTCTGTTCTATTAAGAGATCATTAATTAAAGAAATACAATAACAGCAAA

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611170.2 True 1993 mRNA 0.42 2 73551618 73553748

Neighbor

gene id symbol gene type direction distance location
LOC110529004 LOC106577010 coding upstream 66470 73478288 ~ 73485148 (+)
LOC110528986 LOC106577009 coding upstream 101163 73433053 ~ 73450455 (+)
LOC110528975 LOC106577008 coding upstream 133176 73400847 ~ 73418442 (+)
LOC110528965 LOC106577007 coding upstream 152623 73386028 ~ 73398995 (+)
LOC110528891 LOC106577001 coding upstream 467782 72816192 ~ 73083836 (+)
LOC118936305 LOC106577091 coding downstream 17227 73570975 ~ 73573371 (+)
LOC110529036 itprip coding downstream 26423 73580171 ~ 73589533 (+)
cfap43 cfap43 coding downstream 46435 73600183 ~ 73637760 (+)
LOC110529046 LOC106577092 coding downstream 55261 73609009 ~ 73611011 (+)
col17a1b col17a1 coding downstream 94195 73647943 ~ 73674938 (+)
G82105 NA non-coding upstream 5343 73546001 ~ 73546275 (+)
G82064 NA non-coding upstream 51669 73499646 ~ 73499949 (+)
G81807 NA non-coding upstream 93130 73458175 ~ 73458488 (+)
G81805 NA non-coding upstream 94941 73456461 ~ 73456677 (+)
G81804 NA non-coding upstream 95238 73455926 ~ 73456380 (+)
G82241 NA non-coding downstream 121344 73675092 ~ 73675396 (+)
G82564 NA non-coding downstream 614190 74167938 ~ 74168176 (+)
G82568 spf30 non-coding downstream 631840 74185588 ~ 74189683 (+)
G82575 NA non-coding downstream 639670 74193418 ~ 74193623 (+)
ccdc85a ccdc85a other upstream 2475516 71036440 ~ 71076239 (+)
G78121 NA other upstream 2896657 70571665 ~ 70654961 (+)
G75747 NA other upstream 5176689 68374505 ~ 68374929 (+)
G74139 NA other upstream 6766649 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 6792634 66756207 ~ 66758984 (+)
G83836 NA other downstream 1355477 74909225 ~ 74909806 (+)
G83829 NA other downstream 1558912 75112660 ~ 75114190 (+)
G83979 NA other downstream 1591116 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2904376 76457821 ~ 76459823 (+)
G86019 NA other downstream 3077997 76631745 ~ 76635936 (+)

Expression


Co-expression Network