LOC118936305 (LOC106577091)


Basic Information

Item Value
gene id LOC118936305
gene name LOC106577091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73570975 ~ 73573371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611211.2
GAAACGAAACTATGACAATAACCACATAACCCTCCCATTGGAAGATAACAATTTGGTCCATACAGTATAAAATCAGGATAGTCAGTGAGGTATCTAATCAGACACTAATTTTCTTTGTCGTGAAACAGACACTCATTTTCTTTGTCGAGACCACAAGATGGCTTTCTCTTGCCCAACTACGAAAATGGCTCAGACCTCCTTGAAAATTAGGCTGCAGGGTTTGGAATGCCACTTCACCTGGAAGCTGGACGACAACAGATCTAAACTTCAAAGCCTCAGAGAATCCATGATTGACATCAGCAGCAGCGAGGGGGTTCTCTGTTCCTGGACGGGTCATCTGTACAACTTCCTGGCTTACCTACACCACGCTTTGGGCTCCACAGAGGACGCTCTTCAATGCCTGAAGAAGGCTGAAGAGGCCATTCACCTAAACAGCCCAGACGACGTGGAGCTAAGTCTGGTGGTCCACTATGGGAACTTGGCCTGGGTGCACTATCACCAAGGGGAGCTGACAGAGAGCCAGACCTATGTGGAGAAGGTGGGGAGACTACTGCGGGACAACCCCTCACCCTGCCCAGGTGTAGTGTGGGGAGAAAGGGCCTGGACTTTGAATAAGTTTGATGTAAGCAAGAAAGCAGAAGCACTAGATTGCTTCCGGAAGGCCTTAAAGGGGGACCCTCAGAACAAGGTGCTGCGCTGCGGCTACGCCATGGCGTTTAATAAATCTGttgaaaataaaaacattacCCCGAAGCTGCGATCTGAGATGTTGGAGCACCTACGGATTGCTAGAGAATTGGATCCAGAAGATTTGTACATCACAGTGATGTACCTGCAGAGGCTTGCAGAGAGCGGCCAGGTTGAGGAAGCACGTAAACTCTCAAAGGAAGTGATAGAGAAGCCTTTGGACAGCTTTGGTGGATTTGGAATCTTGCTATATTTTTTACGAGATTACGTCTCTCATGATTCAAGCATTGACCTGGCAAGAAGGACCCTGGAGAGACACCCCAATTCACGCCAGCTGAAGAGACATCTTGGGAAGTGTTACAAATGGAAGATTTTCTCTCAAGAAGAGAAAAGGAACCCAATGAGGCATATTCTGATTGAAAATGCAGTCAGCCTTTATGAAGAGGTGGTCGCACTCTACCCAAAATCCCTTGCAGCTAAACTGGAACTGTCTGCCATGTACAAAGAATCTGGCAGAGTTGATAGAGCAGATAAGATGTTCGAGGACCTGCTTCTTGATAGGGAAGGAATGGAACCACAGAATTTACAAAAAATCTACAACTGGTATGCCCAACATCTGTTTTATGCAAAACAAGATGCTTCCAGGTCAATTGATTTCCACAAGAAGGCAGTAGAGATTATGCTACCCACTGACCAACGTGATAGCAGTATTCATGTTCTGTTGTCCATTGTCCGTAATGGAGGTGACAGAGCGAAGGAAATTGTGAACTTTCTGGATGGCCTTGATGGAGAAGGTGCTGTCGGAAAATTCTAAACCTTTTTTCCAATAAAGGCTTGAATTAAGTAGAACTGTCTGCTGAATCAGTCAAATGTGCATCACCTTTTTAATATTGATTAATGTAGAAAATATATTTACTATACCAAACACCACTAGGAAAAATCTAGGGCAATCTAGGACACAGTTTGATTTAGAAGAAACTGAATACCTTAGTATTAAAAAGATCTGCACTCAATTGCATGACCATCAATACTAAAACTTGAAAGTAAATTCAATGCTGATAATAAAGTCTTATAAATATGTAGGCCAACATGACAAACATCTGTCTGGAATCCACATTTTGAATTGAGTCTGTAAAAATGTACTTTGGACTAATGTACTGTAGACAAACGAATATGTTATTTTACATGTTTCATTATAGAGTAGAGGCCCTGTATAGCCTCACAGACAGACTATCCAGAGCAATAGGATCGTATTGCTTTTATTTTCTTCACACTGGACACAATAGATTGTGTTCCTGGAAAAGGTATGTAATGTGTAATATTGTACTGTCAAATATATTGTAAGTTCTTGTGAAAATAAAGGTAGTATGTTAAGAGATCATTAATTAAAGAAATACAGTAACAGCAAACAATTCCAAGTTATTTTATAATACACCACTATCCCAGTAGTTTACTACAATTTCCTAATGCATAGCTGTGGATATCTAGTTGAAATTGTACAACAAAATACATTGACTATGACCAGCTATGGTCTGCGTTTGATTAAGGCTCTGAAGGTCATGCATACGGTATAAGGTC

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611211.2 True 2265 mRNA 0.42 2 73570975 73573371

Neighbor

gene id symbol gene type direction distance location
LOC110529026 LOC106577090 coding upstream 17227 73551618 ~ 73553748 (+)
LOC110529004 LOC106577010 coding upstream 85827 73478288 ~ 73485148 (+)
LOC110528986 LOC106577009 coding upstream 120520 73433053 ~ 73450455 (+)
LOC110528975 LOC106577008 coding upstream 152533 73400847 ~ 73418442 (+)
LOC110528965 LOC106577007 coding upstream 171980 73386028 ~ 73398995 (+)
LOC110529036 itprip coding downstream 6800 73580171 ~ 73589533 (+)
cfap43 cfap43 coding downstream 26812 73600183 ~ 73637760 (+)
LOC110529046 LOC106577092 coding downstream 35638 73609009 ~ 73611011 (+)
col17a1b col17a1 coding downstream 74572 73647943 ~ 73674938 (+)
LOC110529112 sh3pxd2a coding downstream 141850 73715221 ~ 73810555 (+)
G82105 NA non-coding upstream 24700 73546001 ~ 73546275 (+)
G82064 NA non-coding upstream 71026 73499646 ~ 73499949 (+)
G81807 NA non-coding upstream 112487 73458175 ~ 73458488 (+)
G81805 NA non-coding upstream 114298 73456461 ~ 73456677 (+)
G81804 NA non-coding upstream 114595 73455926 ~ 73456380 (+)
G82241 NA non-coding downstream 101721 73675092 ~ 73675396 (+)
G82564 NA non-coding downstream 594567 74167938 ~ 74168176 (+)
G82568 spf30 non-coding downstream 612217 74185588 ~ 74189683 (+)
G82575 NA non-coding downstream 620047 74193418 ~ 74193623 (+)
ccdc85a ccdc85a other upstream 2494873 71036440 ~ 71076239 (+)
G78121 NA other upstream 2916014 70571665 ~ 70654961 (+)
G75747 NA other upstream 5196046 68374505 ~ 68374929 (+)
G74139 NA other upstream 6786006 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 6811991 66756207 ~ 66758984 (+)
G83836 NA other downstream 1335854 74909225 ~ 74909806 (+)
G83829 NA other downstream 1539289 75112660 ~ 75114190 (+)
G83979 NA other downstream 1571493 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2884753 76457821 ~ 76459823 (+)
G86019 NA other downstream 3058374 76631745 ~ 76635936 (+)

Expression


Co-expression Network