LOC110529046 (LOC106577092)


Basic Information

Item Value
gene id LOC110529046
gene name LOC106577092
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73609009 ~ 73611011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611189.2
GGTATCTAATCAGACACTCATTTGCTCTGTGTTGAAACTCAGAGACCACAAGATGGCTTTCTCTTGTCCAACTATGAGAATGGCTCAGACCTCCTTGAAAATTAGGCTGCAGGGTTTGGAATGCCACTTCACCTGGAAGCTGGACTACAGCAGATCTAAACTAGAAAGCCTCAGAGAAACGATGATAGATATCAGCAACAGAGAGGGGGTTCAATATTCCTGGGAGGGTTATCTGTACAACTTCCTGGCTTACCTACACTATGCTCTGGGCTTCACAGAGGACGCTCTTCGTTGCCTGAAGAAGGCTGAAGAGGCCATTCGCCAAAGCAGCCAAGATGGCATGGAGCTAAGTCTGGTGGTCCACTATGGGAACCTGGCTTGGGTACACTATCACCAAGGGGAGCTAACAGAGAGCCAGACCTATGTGGAGAAGGTGGGGAGACTATTGCGGGACAACCCCTCGCCCTGCCCAGGTGTAGTATGGGGTGAAAGGGCCTGGACTTTGAATACGTTTGATGTAAGCAAGAGGAAGGCAGCGGTATATTGCTTCCGGATGGCCTTAAAAGAGGACCCTGAGAACAAGGTGCTGCGCTGTGGCTACGCCATGGCATTTAATAAATCTGTTGATAGGAAAGACATTACCCCGAAGCTGCGATCTGAGATGTTGGAGCGCCTACGGATTGCTAGAGAATTGGATCCAGAAGATTTGTACATCACAGTGATGTACCTGCAGAGGCTTGCAGAGAGTGGCCAGGTTGAGGAAGCATGTAAACTTGCAAAGGAAGTGACAGAGAAGGCTTTGGACTGCTTTGGTGGATTTGGAATCTTGCTAGATTTTTTAAAAGAATACATCTCTCATGATTCAAGCATTGACCTGGCAAGAAGGACCCTGGAGAGACACCCCAATTCACGCCAGCTGAAGAGACATCTTGGGAAGTGTTACAAATGGAAGATTTTCTCTCTGGAAGAGAAAAGGAACCCAATGAGGCATATTCTGATTGAAAATGCAGTCAGCCTTTATGAAGAGGTGGTCACACTCTACCCAAAATCCCTTGCAGCTAAACTGGAACTCTCTGCCATGTACAAAGAATCTGGCAGAGTTGATAGAGCAGATAAGATATTTGAGGACCTGCTTCTTGAAATAGAAGGAATGGAACCACAGGATTTACAAAAATTCTACAACTGGTATGCCCAGTATTTGTTTTATGCCAAACAAGATGATTCCAGGTCAATTGATATCCACAAGAAGGCAGTAGAGATTATGCTACCCACTGGCCAACGTGACAGTAGTGTTCGTGTTTTGTTGTCCATTGTCCATAATGGAGGAGACAGAGCTGAGGAAATTGTCGACTTTCTGGATGGACTTGATGGAGAAGGTGCTGTCAGCCAGTTCTAGACCTTTTTTTACAATAAAGGCTTGAATTAACCAGAACTGCCTGCCGAGTAAGTCAACTTTGCATCACCTGTTTATGATTGATTAATGTGGAAAATATATTCACTATACCACTAGGACAAATCTAGGACAAGATTTTATTCAGTAACCATTGAATACTTTAGTATTAAAAATGTCTGCGCTTAATTTGGCTACAGGGATTTATTTGCATGATCAACAATACTAAAACTAGAAAGTAAAAATTCAAGGCTGATTGTAAATCCTATAAATATGTAGGCCTAACATGACAAACATCTGTCTCAAATCCACAGTTTCAATTGTATCTGTAAAGGTTTGCTGCACACTAATGTAGTGTAGACAAACTCATATTTTGTTCTTCAATATTGCATTATA

Function

NR:

description
PREDICTED: interferon-induced protein with tetratricopeptide repeats 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611189.2 True 1786 mRNA 0.43 2 73609009 73611011

Neighbor

gene id symbol gene type direction distance location
LOC110529036 itprip coding upstream 19476 73580171 ~ 73589533 (+)
LOC118936305 LOC106577091 coding upstream 35638 73570975 ~ 73573371 (+)
LOC110529026 LOC106577090 coding upstream 55261 73551618 ~ 73553748 (+)
LOC110529004 LOC106577010 coding upstream 123861 73478288 ~ 73485148 (+)
LOC110528986 LOC106577009 coding upstream 158554 73433053 ~ 73450455 (+)
col17a1b col17a1 coding downstream 36932 73647943 ~ 73674938 (+)
LOC110529112 sh3pxd2a coding downstream 104210 73715221 ~ 73810555 (+)
LOC118964464 NA coding downstream 332007 73943018 ~ 73943574 (+)
LOC110529121 LOC106577020 coding downstream 341679 73952690 ~ 74008104 (+)
LOC110529161 add3 coding downstream 500101 74111112 ~ 74160271 (+)
G82105 NA non-coding upstream 62734 73546001 ~ 73546275 (+)
G82064 NA non-coding upstream 109060 73499646 ~ 73499949 (+)
G81807 NA non-coding upstream 150521 73458175 ~ 73458488 (+)
G81805 NA non-coding upstream 152332 73456461 ~ 73456677 (+)
G81804 NA non-coding upstream 152629 73455926 ~ 73456380 (+)
G82241 NA non-coding downstream 64081 73675092 ~ 73675396 (+)
G82564 NA non-coding downstream 556927 74167938 ~ 74168176 (+)
G82568 spf30 non-coding downstream 574577 74185588 ~ 74189683 (+)
G82575 NA non-coding downstream 582407 74193418 ~ 74193623 (+)
G82111 LOC106577091 other upstream 37272 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 2532907 71036440 ~ 71076239 (+)
G78121 NA other upstream 2954048 70571665 ~ 70654961 (+)
G75747 NA other upstream 5234080 68374505 ~ 68374929 (+)
G74139 NA other upstream 6824040 66784335 ~ 66784969 (+)
G83836 NA other downstream 1298214 74909225 ~ 74909806 (+)
G83829 NA other downstream 1501649 75112660 ~ 75114190 (+)
G83979 NA other downstream 1533853 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2847113 76457821 ~ 76459823 (+)
G86019 NA other downstream 3020734 76631745 ~ 76635936 (+)

Expression


Co-expression Network