sfr1 (sfr1)


Basic Information

Item Value
gene id sfr1
gene name sfr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73637635 ~ 73639525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611213.2
AACAAAATAGATTTTCCAGTTGAAATATTCATAAATACATTGGCCTGAAACGAATTAAATCTGTTTTAGGATTGATATACTACAACTCCCACAGTTATTTTCTGTAAACAGGAAATATGGAGTCTAACTTTCAACCAATCAAAAGGAGTCCcattagttaccacagccacaaagtcaaaatgggcCAAATCGTAAAAAAACATGGAAACAACAAGTGGCTTTTTGATGTTAATGTAAGGTTAGTGTTATGTATaaattagcagtgtggttaacgttagttttaaaatcagattttaagaaaataaattgtagaaataggcggggtttatgactttgtgactGTAATAATGACCAATAAAAGCTTGGAGGTTTGCATGAGCTTGTTGTTAGCAAGCTAACCCTGTGGAAAACTTTCGTGAGGCCAATTTGTAACCTACGCGTTGTGTTTATATGGATGTAGCTTGTTGTAATTAAAGAAATGGAGACCACACCGAAGACAACCAAATCAAAACCTGTGTACGGCACACCCTGTTATTTAAAATCAAGCCCATGTGAATCCAGTAGTGTGCAAAAGCCAAAACAGCAGATGAGTTATTCTCTGAAGGAACGACTGAAAAGATCAAAACGTTCCTTCACCTCTCCTGTTTCCGTGGCCAAACGTCTTAACATCGATGATGACCAACTACCCTCAACAGCAGACAAAGAGACCGAGCATGGTGCCAAAACAGACAGACTGAAGAATATTGACATGAACAGAAATGAGATCACGCCCAGTGAATGTCCAGAGACTAGAAGGGCTGGGGTCCCTGGCCCCATGTCTGAATCAGCTCAACCCACTCATATAGACTTACTACAACTACGAGACCAATTGAAGAGAGAGGTTAAAGAAAGGACCGAGAGACTACGGAGACTGAAGATGGCTAAAATGTACAGAAGCAAGAATGACCTGACACAGTTGAGAGTTTTGATTGACAAGTGGCGGAGTTGTAGTCAGGCTGCATTGTATGAGCTCCAGTCAGATCTCCCCATAGATGGCAGGAAAGCCAGCATCTCCCAGCTAATTGACCTCTTTGGTGTAGAGGACAGCATACTGCACTTTAACCGCACAGAAGAGGACTTCACCAATGCATAGACCCACATGCCTTCTGTTCATGTTGTCACAAATAATATTAATTGTTGATTTATCATGCAGATTTCCTGCCTTTGTTGAATAATCTAGATTCAATCTTATGTACTGGATGTTTTTCACCCTAAATTTACTATGATCCACAAGTAATTTGAGTGAAAAAAATAACATTAATTTGCCACTTCATCAGTTTAATTTCATACTGTTACCTACCATAGTAATTTATATTAGTTCTATATTTAAACATGAAAATCAGTTTGATGTTTTgtaaattttttaaaaataaagtgTTTCCTAAAT

Function

symbol description
sfr1 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in double-strand break repair via homologous recombination and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Swi5-Sfr1 complex. Orthologous to human SFR1 (SWI5 dependent homologous recombination repair protein 1).

NR:

description
swi5-dependent recombination DNA repair protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611213.2 True 1426 mRNA 0.38 3 73637635 73639525

Neighbor

gene id symbol gene type direction distance location
LOC110529015 LOC106577089 coding downstream 88682 73547098 ~ 73548953 (-)
LOC110528949 LOC106577006 coding downstream 263898 73323452 ~ 73373737 (-)
LOC110528926 LOC106577002 coding downstream 347525 73140464 ~ 73290110 (-)
LOC110528940 LOC106577088 coding downstream 500785 73134648 ~ 73136850 (-)
plek LOC106577000 coding downstream 1019417 72612186 ~ 72618218 (-)
slka slk coding upstream 36133 73675658 ~ 73711294 (-)
LOC110529113 neurl1 coding upstream 186899 73826424 ~ 73886957 (-)
LOC110529136 LOC106608714 coding upstream 372466 74011991 ~ 74062308 (-)
LOC110529148 NA coding upstream 443414 74081285 ~ 74085971 (-)
smndc1 spf30 coding upstream 544288 74183813 ~ 74189681 (-)
G82217 cfap43 non-coding downstream 10916 73626358 ~ 73626719 (-)
G82213 NA non-coding downstream 15832 73621338 ~ 73621803 (-)
G82165 LOC106577091 non-coding downstream 27535 73551798 ~ 73610100 (-)
G82176 NA non-coding downstream 30923 73564828 ~ 73606712 (-)
G82234 NA non-coding upstream 5991 73645516 ~ 73645939 (-)
G82605 NA non-coding upstream 32559 73672084 ~ 73674931 (-)
G82608 NA non-coding upstream 35562 73675087 ~ 73675418 (-)
G82654 NA non-coding upstream 100662 73740187 ~ 73772122 (-)
G82834 NA non-coding upstream 357912 73997437 ~ 73998413 (-)
LOC110528794 LOC106576993 other downstream 1385717 72202814 ~ 72251918 (-)
G80957 NA other downstream 1426546 72207929 ~ 72211089 (-)
G79904 NA other downstream 1893826 71743045 ~ 71743809 (-)
G79700 NA other downstream 2167176 71469435 ~ 71470755 (-)
G79616 NA other downstream 2251112 71321950 ~ 71386523 (-)
G83429 NA other upstream 932922 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 1332687 74971772 ~ 74975108 (-)
G84713 NA other upstream 1888818 75528343 ~ 75528903 (-)
G85866 NA other upstream 2693943 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 2727768 76324531 ~ 76399997 (-)

Expression


Co-expression Network