LOC110529148


Basic Information

Item Value
gene id LOC110529148
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74081285 ~ 74085971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474341.2
TGGCACTGAGCAGTGTTGATTGAGCTTCCGGGTTTAACTTGAAACTTCCTTTTCATCTAAATGCTGATGATGCAAGGGCAGCTGGAATTGTGACGTGTGAAAGACCAAAATAGGTTTGGACTGCCCTTTGCAGCACATATACACAATTTGATGATTCCCAAACGGAGGTGGAGGATGTCCTGCTGGACCTGATTGAGGCCAATCAAGACCTGTGCCTCACAATCAAAGATCTTGATGAAGATTCTGACAGCAAGACGTATTAGAAGAATACCAGACAACTAAAACATTGGACCACAGAACCAGGAGAGAGATTGCCATCTTAGTCAGCCGCATGAAAGAGATGCATGAGAGGCTTCCCACTCATCAACAGAGAGAACGTTATGCTCTTGGAATTCAGGAGGCCCAACCCATAGGAGGAAAACTGACCTGGACCACCAGCTTGTTGGTGATGCCTGCAAGGAGGCCATATCATTCCTTGTCCACACATCCAATGAAAAACACATCTATCAGAAGATGTAGGAGGTATTCCAGTATCGCCAGGAGCTAGTTTATAGTCCAGACAGAAGCACAGATGTCCTCAGTCTTTCCCAGGTTTCTGGGAATCATACGATTGGTGAATCAGGACTTTTTGCTGATGCTCGACGATGAAACGTCCTCTAAGCTCCTTGAAAAATGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGGCAAAATCCCTGACTACCACAGCTCCTGAAGTCTGCAGAAAAACTGCTGGAGAATGACAGCAAAACCAGTTACTGGATTCTCGTGGGTAGTGCAATATTTCAAATTCAGGATATTGTTTTATGTGATTTGGGGTTGTTTGCTTTTTCTTTCCCTCAGACTGGGACAATATGTCCTCCCTGCTGCTGCttcatctcctccctccaccagCAGGAGGGAAGAGGACCAAACTCAGTGCCAGTGAAGCTGTCGGCAGACTAGTGCACTTTCATAAGTCATGCTGCAGCATTGAAGACTATCTTGATGGGAGCCATGGTCGACAGCCATACCTCCTTGCCGTCGGAAGAAGACAGAGCAAGATTGACAACTACTACATTGTGGTGGACAAGAGGCTAGTTCCCTGCCAGGCAAATAGTGATCTGTGTGCGTTTGAACTATTCAAAGTCCACTTTGTCTTTAACCTGAcataaactcagtaaaaaaagaaacgtcaactgcatttattttcatcaaacttaacgtgtaaatatttgtatgaacataacaagattcaacaacagacataaactgaacaagttccagaga
>XR_005052844.1
TGGCACTGAGCAGTGTTGATTGAGCTTCCGGGTTTAACTTGAAACTTCCTTTTCATCTAAATGCTGATGATGCAAGGGCAGCTGGAATTGTGACGTGTGAAAGACCAAAATAGGTTTGGACTGCCCTTTGCAGCACATATACACAATTTGATGATTCCCAAACGGAGGTGGAGGATGTCCTGCTGGACCTGATTGAGGCCAATCAAGACCTGTGCCTCACAATCAAAGATCTTGATGAAGATTCTGACAGCAAGACGTATTAGAAGAATACCAGACAACTAAAACATTGGACCACAGAACCAGGAGAGAGATTGCCATCTTAGTCAGCCGCATGAAAGAGATGCATGAGAGGCTTCCCACTCATCAACAGAGAGAACGTTATGCTCTTGGAATTCAGGAGGCCCAACCCATAGGAGGAAAACTGACCTGGACCACCAGCTTGTTGGTGATGCCTGCAAGGAGGCCATATCATTCCTTGTCCACACATCCAATGAAAAACACATCTATCAGAAGATGTAGGAGGTATTCCAGTATCGCCAGGAGCTAGTTTATAGTCCAGACAGAAGCACAGATGTCCTCAGTCTTTCCCAGGTTTCTGGGAATCATACGATTGGTGAATCAGGACTTTTTGCTGATGCTCGACGATGAAACGTCCTCTAAGCTCCTTGAAAAATGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGGCAAAATCCCTGACTACCACAGCTCCTGAAGTCTGCAGAAAAACTGCTGGAGAATGACAGCAAAACCAACTGGGACAATATGTCCTCCCTGCTGCTGCttcatctcctccctccaccagCAGGAGGGAAGAGGACCAAACTCAGTGCCAGTGAAGCTGTCGGCAGACTAGTGCACTTTCATAAGTCATGCTGCAGCATTGAAGACTATCTTGATGGGAGCCATGGTCGACAGCCATACCTCCTTGCCGTCGGAAGAAGACAGAGCAAGATTGACAACTACTACATTGTGGTGGACAAGAGGCTAGTTCCCTGCCAGGCAAATAGTGATCTGTGTGCGTTTGAACTATTCAAAGTCCACTTTGTCTTTAACCTGAcataaactcagtaaaaaaagaaacgtcaactgcatttattttcatcaaacttaacgtgtaaatatttgtatgaacataacaagattcaacaacagacataaactgaacaagttccagaga
>XR_005052845.1
TGGCACTGAGCAGTGTTGATTGAGCTTCCGGGTTTAACTTGAAACTTCCTTTTCATCTAAATGCTGATGATGCAAGGGCAGCTGGAATTGTGACGTGTGAAAGACCAAAATAGGTTTGGACTGCCCTTTGCAGCACATATACACAATTTGATGATTCCCAAACGGAGGTGGAGGATGTCCTGCTGGACCTGATTGAGGCCAATCAAGACCTGTGCCTCACAATCAAAGATCTTGATGAAGATTCTGACAGCAAGACGTATTAGAAGAATACCAGACAACTAAAACATTGGACCACAGAACCAGGAGAGAGATTGCCATCTTAGTCAGCCGCATGAAAGAGATGCATGAGAGGCTTCCCACTCATCAACAGAGAGAACGTTATGCTCTTGGAATTCAGGAGGCCCAACCCATAGGAGGAAAACTGACCTGGACCACCAGCTTGTTGGTGATGCCTGCAAGGAGGCCATATCATTCCTTGTCCACACATCCAATGAAAAACACATCTATCAGAAGATGTAGGAGGTATTCCAGTATCGCCAGGAGCTAGTTTATAGTCCAGACAGAAGCACAGATGTCCTCAGTCTTTCCCAGGTTTCTGGGAATCATACGATTGGTGAATCAGGACTTTTTGCTGATGCTCGACGATGAAACGTCCTCTAAGCTCCTTGAAAAATGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGGCAAAATCCCTGACTACCACAGCTCCTGAAGTCTGCAGAAAAACTGCTGGAGAATGACAGCAAAACCAGTTACTGGATTCTCGTGGGTAGTGCAATATTTCAAATTCAGGATATTGTTTTATGTGATTTGGGGTTGTTTGCTTTTTCTTTCCCTCAGACTGGGACAATATGTCCTCCCTGCTGCTGCttcatctcctccctccaccagCAGGAGGGAAGAGGACCAAACTCAGTGCCAGTGAAGCTGTCGGCAGACTAGTGCACTTTCATAAGACCCTTTGTGTGTTGCAGTCATGCTGCAGCATTGAAGACTATCTTGATGGGAGCCATGGTCGACAGCCATACCTCCTTGCCGTCGGAAGAAGACAGAGCAAGATTGACAACTACTACATTGTGGTGGACAAGAGGCTAGTTCCCTGCCAGGCAAATAGTGATCTGTGTGCGTTTGAACTATTCAAAGTCCACTTTGTCTTTAACCTGAcataaactcagtaaaaaaagaaacgtcaactgcatttattttcatcaaacttaacgtgtaaatatttgtatgaacataacaagattcaacaacagacataaactgaacaagttccagaga
>TU91484
ATGATGCAAGGGCAGCTGGAATTGTGACGTGTGAAAGGAGGCCCAACCCATAGGAGGAAAACTGACCTGGACCACCAGCTTGTTGGTGATGCCTGCAAGGAGGCCATATCATTCCTTGTCCACACATCCAATGAAAAACACATCTATCAGAAGATGTAGGAGGTATTCCAGTATCGCCAGGAGCTAGTTTATAGTCCAGACAGAAGCACAGATGTCCTCAGTCTTTCCCAGGTTTCTGGGAATCATACGATTGGTGAATCAGGACTTTTTGCTGATGCTCGACGATGAAACGTCCTCTAAGCTCCTTGAAAAATGGGACACTGTATTGAAGCCTAAAGTCATCAAACTGGCAAAATCCCTGACTACCACAGCTCCTGAAGTCTGCAGAAAAACTGCTGGAGAATGACAGCAAAACCAACTGGGACAATATGTCCTCCCTGCTGCTGCttcatctcctccctccaccagCAGGAGGGAAGAGGACCAAACTCAGTGCCAGTGAAGCTGTCGGCAGACTAGTGCACTTTCATAAGTCATGCTGCAGCATTGAAGACTATCTTGATGGGAGCCATGGTCGACAGCCATACCTCCTTGCCGTCGGAAGAAGACAGAGCAAGATTGACAACTACTACATTGTGGTGGACAAGAGGCTAGTTCCCTGCCAGGCAAATAGTGATCTGTGTGCGTTTGAACTATTCAAAGTCCACTTTGTCTTTAACCTGAcataaactcagtaaaaaaagaaacgtcaactgcatttattttcatcaaacttaacgtgtaaatatttgtatgaacataacaagattcaacaacagacataaactgaacaagttccagagacgtgactaacagaaatggaataatgtgtctctgaacaaagggagggtcaaactcaaaagtaacagtcagtatctggtgtggtcaccagctgcattaagtactgcagtgcatctcctcctcatggactgcatcaaattagccagttcttgcatctgcaagttcccagacatttctggggagaatggccctcaccctccgatccaaaaggtcccagacgtgctcaatgggattgagatccgggctctttgctggccatggcagaacactgacattcctgtcttgcaggaaatcacacacagaacgagcagtatgactggtggcattgtcatgctggagggtcatgtcaggatgaacctgcaggaagggtaccacatgagggaggaggatgtcttcctgtaatgcacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctcgatccTTCTCCAGAGTACagtcctcggtgtaacgctcattccttcgacgataaacacgaatccgaccatcactcctagtgagacaaaaccgcgactcgtcagtgacgagcactttttgccagtcctgtctggtccagcgacggtgggtttgtgcccataggcgacattgtgccagtgatgtctggtgaggacctgccttacaacaggcctacaagccctcagcccAGCTTCTCTCAGCCTGACGAGGACAGtcttgagcactgatggaggggctgtgtgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgttcagatgcaccgatcctgtgcaggtgctgttacacgtggtctgccactgcgaggatgaccagctgtccgtcctgtctccctgtagcgctgtcttaggcgtctcacagtatgggtATTTCAATTTATTGCCCATGCCACTTCTGCAGTCCTCGTGCCTCCTTTcagcatgtctaaggcacgttcacgcatatgagcagggaccctgggcatctttcttttgctgtttttcagagttagtagaaaggcctctttcgtGTCCAACGTTTTCATAACtgatcttaattgcctaccgtctgtaagctgttagtgtcttaacgaccgttccgcaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccatttacaatgaagatctgtgaagttatttggatttttatgaattatctttgaaagaccaggtcctgaaaaggggacgtttctttttttgagtTAATGATGATTCTCGTCAACTTCTACATTGTGCAGACAATCCTTTGTTTGACATAATTGAGTAATAGTCAGATTATTGCCAACTTTGTCAAGAAAATTGCAGAATTAGTCTTAGGAGGGCATCCACTTGTGTTTAAATAGTAACTCTGCAAATACTTGTTCGCATATAATATATGTACTGATGTGTCTGTGATGCACTGATTTCATTCTGATGCATCCTCTCTTTTGTAGCCTAAATAAATTAAACTAAGCAGAGTCATTAATATTGTAACAAATCCTTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104923762

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474341.2 False 1292 mRNA 0.44 6 74082939 74085971
XR_005052844.1 False 1203 mRNA 0.45 7 74082939 74085971
XR_005052845.1 False 1310 mRNA 0.45 6 74082939 74085971
TU91484 True 2435 lncRNA 0.46 7 74081285 74085905

Neighbor

gene id symbol gene type direction distance location
LOC110529136 LOC106608714 coding downstream 20631 74011991 ~ 74062308 (-)
LOC110529113 neurl1 coding downstream 195982 73826424 ~ 73886957 (-)
slka slk coding downstream 371645 73675658 ~ 73711294 (-)
sfr1 sfr1 coding downstream 443414 73637635 ~ 73639525 (-)
LOC110529015 LOC106577089 coding downstream 533986 73547098 ~ 73548953 (-)
smndc1 spf30 coding upstream 97842 74183813 ~ 74189681 (-)
LOC110529206 ppp2r2d coding upstream 143277 74229248 ~ 74234117 (-)
mgmt mgmt coding upstream 262819 74348790 ~ 74378154 (-)
gnrh3 NA coding upstream 391200 74477119 ~ 74478278 (-)
LOC110529277 ptpre coding upstream 393967 74479938 ~ 74531625 (-)
G82834 NA non-coding downstream 84526 73997437 ~ 73998413 (-)
G82654 NA non-coding downstream 310817 73740187 ~ 73772122 (-)
G82608 NA non-coding downstream 407521 73675087 ~ 73675418 (-)
G82605 NA non-coding downstream 408008 73672084 ~ 73674931 (-)
G82234 NA non-coding downstream 437000 73645516 ~ 73645939 (-)
G82931 NA non-coding upstream 81314 74167285 ~ 74167528 (-)
G82951 NA non-coding upstream 111416 74197387 ~ 74197605 (-)
G82958 NA non-coding upstream 120336 74206307 ~ 74207126 (-)
G82963 NA non-coding upstream 127899 74213870 ~ 74214184 (-)
G82966 NA non-coding upstream 131408 74217379 ~ 74217650 (-)
LOC110528794 LOC106576993 other downstream 1831021 72202814 ~ 72251918 (-)
G80957 NA other downstream 1871850 72207929 ~ 72211089 (-)
G79904 NA other downstream 2339130 71743045 ~ 71743809 (-)
G79700 NA other downstream 2612480 71469435 ~ 71470755 (-)
G79616 NA other downstream 2696416 71321950 ~ 71386523 (-)
G83429 NA other upstream 486476 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 886241 74971772 ~ 74975108 (-)
G84713 NA other upstream 1442372 75528343 ~ 75528903 (-)
G85866 NA other upstream 2247497 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 2281322 76324531 ~ 76399997 (-)

Expression


Co-expression Network