bnip3 (bnip3)


Basic Information

Item Value
gene id bnip3
gene name bnip3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74218970 ~ 74226765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614653.2
GATAAGTTACTAGCCAATCACATTTCACTTGGCCCATGTCAACAAAAGATTTCGTTATAATTGTTTTCCTGCTGCCTGGTAGTGTTGCACAACAACTTCTAGTGCTTACTCGTGTGATCGATTAAAATAAGACCAAACGTTTTATAGTTCGTCGACAGAGCTCTATGCGTTGATTCGAACGCGTTTTAAATAAACATGTCGCTTCAGAAGGAAATTCCGTATGAGGAGAGCTTGCAGGGTTCCTGGGTGGAGTTGCACTATAACACTGGCAGTGGGAGTCAGGTGTGCCAGGAGCAGATCTCAACAACTGCTCTTGATGTAGACCTGGAGAAGTTACTACTAGACGCCCAACACGAGTCAAGCAGGAGTACCTCGAGAGGAAGCTCACAATGTGACAGgacagggatttgggcctgttcccgggagagcagtgtatccttctcgtcggactcgttaaaggaaagtttgtgTCCACTAAGGTCACAGACTCCTCTTCTTCTGTTTAGAGGCTCAGAGGGAAACAGTTCACAGTCTGAGGAAGATAACCAAGAAATAATCCAGGAAGTAGAGAATCTACTGAAGAAGAATGCTGACTGGATCTGGGACTGGTCCAGTCGTCCTGAGAACAACCCACCAAAGTGCATAGTACCTCGTAATTATATACAGGAGTTTCTGCTGAAACACCCCAGGCGCTCAGCCTCGCTCAGCATCAGGAAGACCAACGTCATGAAGAAAGGAGGCGTTCTCTCCCCTGACTTCCTCAAGCTTTTCCTTCCTTCATTATTCATTTCTCATATACTCGCAGTTGGCCTGGGGATATACATTGGGAGGCGCCTCAGCACATACAGCACCTACTGAAGCTGATGCTGCATTATGAGACCACTGACTCATACAGCTGGCATGCCTTCAAATGGGGGCAACTTCAGAATCCAAGGAGAAGTGGTTGATGTAGCATTCTCCATTTTAGCTGATTGCCTCATCTTATCTTCTGAATGCTGTGACTGCTTCTTTCTCCCAGAAATGCCTTGAATCAGGAACTGATTTGTGCTGCCATGTTCCTCTCGCTTTtttagaatgttgttttataTTGAACTGCTGCCAATTGGCATTGTTTCTCATTTTCTTACGCATATTGTGTTTGTGTTTTGCCTGTTTGTTACTCTTAAGGGAATGATTAATGTGAATGAATATTAATTGTGAAAtaatttcctgcactcattttcTTTGAAAAAAGCTGGGGTTAATACATTTCATGCAACATGTGAAAGGCAGGGTGTGAATTGCAACAAAAGTCCAACTTTTGGGGGGTCTCTAATTTAACCTATTTTCCTATTTGTTTAAAATTCTATTGTGTACTGTTACAGTGGTAAAGATGAAAATAAAAGCTTATTCCAAATTAAATGAA
>XM_021615451.2
GATAAGTTACTAGCCAATCACATTTCACTTGGCCCATGTCAACAAAAGATTTCGTTATAATTGTTTTCCTGCTGCCTGGTAGTGTTGCACAACAACTTCTAGTGCTTACTCGTGTGATCGATTAAAATAAGACCAAACGTTTTATAGTTCGTCGACAGAGCTCTATGCGTTGATTCGAACGCGTTTTAAATAAACATGTCGCTTCAGAAGGAAATTCCGTATGAGGAGAGCTTGCAGGGTTCCTGGGTGGAGTTGCACTATAACACTGGCAGTGGGAGTCAGGTGTGCCAGGAGCAGATCTCAACAACTGCTCTTGATGTAGACCTGGAGAAGTTACTACTAGACGCCCAACACGAGTCAAGCAGGAGTACCTCGAGAGGAAGCTCACAATGTGACAGgacagggatttgggcctgttcccgggagagcagtgtatccttctcgtcggactcgttaaaggaaagtttgtgTCCACTAAGGTCACAGACTCCTCTTCTTCTGTTTAGAGGCTCAGAGGGAAACAGTTCACAGTCTGAGGAAGATAACCAAGAAATAATCCAGGAAGTAGAGAATCTACTGAAGAAGAATGCTGACTGGATCTGGGACTGGTCCAGTCGTCCTGAGAACAACCCACCAAAGGAGTTTCTGCTGAAACACCCCAGGCGCTCAGCCTCGCTCAGCATCAGGAAGACCAACGTCATGAAGAAAGGAGGCGTTCTCTCCCCTGACTTCCTCAAGCTTTTCCTTCCTTCATTATTCATTTCTCATATACTCGCAGTTGGCCTGGGGATATACATTGGGAGGCGCCTCAGCACATACAGCACCTACTGAAGCTGATGCTGCATTATGAGACCACTGACTCATACAGCTGGCATGCCTTCAAATGGGGGCAACTTCAGAATCCAAGGAGAAGTGGTTGATGTAGCATTCTCCATTTTAGCTGATTGCCTCATCTTATCTTCTGAATGCTGTGACTGCTTCTTTCTCCCAGAAATGCCTTGAATCAGGAACTGATTTGTGCTGCCATGTTCCTCTCGCTTTtttagaatgttgttttataTTGAACTGCTGCCAATTGGCATTGTTTCTCATTTTCTTACGCATATTGTGTTTGTGTTTTGCCTGTTTGTTACTCTTAAGGGAATGATTAATGTGAATGAATATTAATTGTGAAAtaatttcctgcactcattttcTTTGAAAAAAGCTGGGGTTAATACATTTCATGCAACATGTGAAAGGCAGGGTGTGAATTGCAACAAAAGTCCAACTTTTGGGGGGTCTCTAATTTAACCTATTTTCCTATTTGTTTAAAATTCTATTGTGTACTGTTACAGTGGTAAAGATGAAAATAAAAGCTTATTCCAAATTAAATGAA
>XM_021616257.2
GATAAGTTACTAGCCAATCACATTTCACTTGGCCCATGTCAACAAAAGATTTCGTTATAATTGTTTTCCTGCTGCCTGGTAGTGTTGCACAACAACTTCTAGTGCTTACTCGTGTGATCGATTAAAATAAGACCAAACGTTTTATAGTTCGTCGACAGAGCTCTATGCGTTGATTCGAACGCGTTTTAAATAAACATGTCGCTTCAGAAGGAAATTCCGTATGAGGAGAGCTTGCAGGGTTCCTGGGTGGAGTTGCACTATAACACTGGCAGTGGGAGTCAGGTGTGCCAGGAGCAGATCTCAACAACTGCTCTTGATGTAGACCTGGAGAAGTTACTACTAGACGCCCAACACGAGTCAAGCAGGAGTACCTCGAGAGGAAGCTCACAATGTGACAGTCCACTAAGGTCACAGACTCCTCTTCTTCTGTTTAGAGGCTCAGAGGGAAACAGTTCACAGTCTGAGGAAGATAACCAAGAAATAATCCAGGAAGTAGAGAATCTACTGAAGAAGAATGCTGACTGGATCTGGGACTGGTCCAGTCGTCCTGAGAACAACCCACCAAAGTGCATAGTACCTCGTAATTATATACAGGAGTTTCTGCTGAAACACCCCAGGCGCTCAGCCTCGCTCAGCATCAGGAAGACCAACGTCATGAAGAAAGGAGGCGTTCTCTCCCCTGACTTCCTCAAGCTTTTCCTTCCTTCATTATTCATTTCTCATATACTCGCAGTTGGCCTGGGGATATACATTGGGAGGCGCCTCAGCACATACAGCACCTACTGAAGCTGATGCTGCATTATGAGACCACTGACTCATACAGCTGGCATGCCTTCAAATGGGGGCAACTTCAGAATCCAAGGAGAAGTGGTTGATGTAGCATTCTCCATTTTAGCTGATTGCCTCATCTTATCTTCTGAATGCTGTGACTGCTTCTTTCTCCCAGAAATGCCTTGAATCAGGAACTGATTTGTGCTGCCATGTTCCTCTCGCTTTtttagaatgttgttttataTTGAACTGCTGCCAATTGGCATTGTTTCTCATTTTCTTACGCATATTGTGTTTGTGTTTTGCCTGTTTGTTACTCTTAAGGGAATGATTAATGTGAATGAATATTAATTGTGAAAtaatttcctgcactcattttcTTTGAAAAAAGCTGGGGTTAATACATTTCATGCAACATGTGAAAGGCAGGGTGTGAATTGCAACAAAAGTCCAACTTTTGGGGGGTCTCTAATTTAACCTATTTTCCTATTTGTTTAAAATTCTATTGTGTACTGTTACAGTGGTAAAGATGAAAATAAAAGCTTATTCCAAATTAAATGAA
>NM_001160533.2
GCACAACAACTTCTAGTGCTTACTCGTGTGATCGATTAAAATAAGACCAAACGTTTTATAGTTCGTCGACAGAGCTCTATGCGTTGATTCGAACGCGTTTTAAATAAACATGTCGCTTCAGAAGGAAATTCCGTATGAGGAGAGCTTGCAGGGTTCCTGGGTGGAGTTGCACTATAACACTGGCAGTGGGAGTCAGGTGTGCCAGGAGCAGATCTCAACAACTGCTCTTGATGTAGACCTGGAGAAGTTACTACTAGACGCCCAACACGAGTCAAGCAGGAGTACCTCGAGAGGAAGCTCACAATGTGACAGTCCACTAAGGTCACAGACTCCTCTTCTTCTGTTTAGAGGCTCAGAGGGAAACAGTTCACAGTCTGAGGAAGATAACCAAGAAATAATCCAGGAAGTAGAGAATCTACTGAAGAAGAATGCTGACTGGATCTGGGACTGGTCCAGTCGTCCTGAGAACAACCCACCAAAGGAGTTTCTGCTGAAACACCCCAGGCGCTCAGCCTCGCTCAGCATCAGGAAGACCAACGTCATGAAGAAAGGAGGCGTTCTCTCCCCTGACTTCCTCAAGCTTTTCCTTCCTTCATTATTCATTTCTCATATACTCGCAGTTGGCCTGGGGATATACATTGGGAGGCGCCTCAGCACATACAGCACCTACTGAAGCTGATGCTGCATTATGAGACCACTGACTCATACAGCTGGCATGCCTTCAAATGGGGGCAACTTCAGAATCCAAGGAGAAGTGGTTGATGTAGCATTCTCCATTTTAGCTGATTGCCTCATCTTATCTTCTGAATGCTGTGACTGCTTCTTTCTCCCAGAAATGCCTTGAATCAGGAACTGATTTGTGCTGCCATGTTCCTCTCGCTTTtttagaatgttgttttataTTGAACTGCTGCCAATTGGCATTGTTTCTCATTTTCTTACGCATATTGTGTTTGTGTTTTGCCTGTTTGTTACTCTTAAGGGAATGATTAATGTGAATGAATATTAATTGTGAAAtaatttcctgcactcattttcTTTGAAAAAAGCTGGGGTTAATACATTTCATGCAACATGTGAAAGGCAGGGTGTGAATTGCAACAAAAGTCCAACTTTTGGGGGGTCTCTAATTTAACCTATTTTCCTATTTGTTTAAAATTCTATTGTGTACTGTTACAGTGGTAAAGATGAAAATAAAAGCTTATTCC

Function

symbol description
bnip3 Predicted to be involved in mitochondrial outer membrane permeabilization and positive regulation of programmed cell death. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in liver. Orthologous to human BNIP3 (BCL2 interacting protein 3).

NR:

description
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
K15464 BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614653.2 False 1405 mRNA 0.43 7 74218970 74226765
XM_021615451.2 False 1378 mRNA 0.43 7 74218970 74226765
XM_021616257.2 False 1333 mRNA 0.42 6 74218970 74226765
NM_001160533.2 True 1208 mRNA 0.43 6 74219056 74226753

Neighbor

gene id symbol gene type direction distance location
LOC110529196 LOC106577022 coding upstream 26550 74190060 ~ 74192420 (+)
LOC110529185 mxi1 coding upstream 35271 74171733 ~ 74183699 (+)
LOC110529161 add3 coding upstream 58699 74111112 ~ 74160271 (+)
LOC110529121 LOC106577020 coding upstream 210866 73952690 ~ 74008104 (+)
LOC118964464 NA coding upstream 275396 73943018 ~ 73943574 (+)
ebf3a LOC106577027 coding downstream 41915 74268680 ~ 74342595 (+)
LOC118966714 NA coding downstream 429791 74656556 ~ 74656864 (+)
insyn2a fam196a coding downstream 455269 74682034 ~ 74709286 (+)
c1h10orf90 cssa18h10orf90 coding downstream 565791 74792556 ~ 74812476 (+)
LOC110529328 adam12 coding downstream 590942 74817707 ~ 74965855 (+)
G82575 NA non-coding upstream 25347 74193418 ~ 74193623 (+)
G82568 spf30 non-coding upstream 29287 74185588 ~ 74189683 (+)
G82564 NA non-coding upstream 50794 74167938 ~ 74168176 (+)
G82241 NA non-coding upstream 543574 73675092 ~ 73675396 (+)
col17a1b col17a1 non-coding upstream 544032 73647943 ~ 73674938 (+)
G82535 NA non-coding downstream 1138 74227903 ~ 74229003 (+)
G82975 NA non-coding downstream 9472 74236237 ~ 74236439 (+)
G82981 NA non-coding downstream 12695 74239460 ~ 74239703 (+)
G83019 NA non-coding downstream 40447 74267212 ~ 74267418 (+)
G83069 NA non-coding downstream 124946 74351711 ~ 74351947 (+)
G82111 LOC106577091 other upstream 647233 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 3142868 71036440 ~ 71076239 (+)
G78121 NA other upstream 3564009 70571665 ~ 70654961 (+)
G75747 NA other upstream 5844041 68374505 ~ 68374929 (+)
G74139 NA other upstream 7434001 66784335 ~ 66784969 (+)
G83836 NA other downstream 682460 74909225 ~ 74909806 (+)
G83829 NA other downstream 885895 75112660 ~ 75114190 (+)
G83979 NA other downstream 918099 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2231359 76457821 ~ 76459823 (+)
G86019 NA other downstream 2404980 76631745 ~ 76635936 (+)

Expression


Co-expression Network