LOC110529425 (LOC106577041)


Basic Information

Item Value
gene id LOC110529425
gene name LOC106577041
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75155168 ~ 75182737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985380.1
ACGTTCCAGCGAGCACGGGGTTTCATGCAGTTTCTCAGTCCCACACTGCCATCGCCGCTGTGGAGGCAGTAGTGCGCATGAAGATCCACACACTTTTCTGGTCCTTTGTTGCGGAAATCGAAGATGACTTAACTTCGACAGACTCTCAGCTGGCCAGGGATTGGCTGAATAGCGAGAGACGCTCCCCTACCAACGAGGACACTCTGCGGATGAGAGGTGGTCGTCTGCCCGTCCAAACTGCCCAAAAGACCATCTCCCCATCCGTCCTCACCTAAGATGGCTTCCCACGGCCTTCTCCTGCACTGGAACGGACTGGAGCAGAGCTGTGCCCTACCATGGTGATCATCTTCTCAAAAACACTGGAAAAGAAGAAAGGTGGCGATCATGTAAGGGCTAAGGACACTGAATATTTGCTGCTGCGTGAGCGCCACACCATGAGCAGAGGGACTACCCTCTTCTCCTGTGGCACTGTGGAGGCAGACAGGTGGCTGGAGCTTGGCCGAGGCTGTGCCATCCAGCGAGGGACGCCCTGCGAGTCCGGCGCCAGTCTGGAGAGCCTGTGGGATGTTCTGCCCGAGGAGTGCCAGCGGAGGAGCCTGGTCTGGGGCCACGAGGTTGGCCCTGCCACCGCCATCACCAGCCTCATTCGAGACCTTAACCTTGGCGATGCCAAGCTGGCAGCCACCCAGTCCCTGGCCCTCGCCAACTCCCCTTCAGCCTCCACGGCACCCCCTAGCAAGCGCCAGTGCCGCTCACTCTCCTTCTCAGAAGAGTTTGGTGGCTGCCGGTCTTCATGGAGACCTCAGGTGTCGCGAGTGTGGACGGCGGTGGAGAAGAGGAGGTGCCACAGTGGGGGGAGTGTGCATCGCTGCTCTGGAGGAGGTGGTATAGGAGGTGGTGGAGGTTATTCAGGGGGTCATTTTCCTGCCATGCAGCGGAGCTCCAGTTTCAGCCTACCCTCACGGTCCAACAACCCCACAGACGGGGCTTTGGAGCTTCCCTGCTTCACCCAGCGCCTACCCCTTCACCCCCTGTTCACTGCCTCCCCTACgtccccctcccaccaccactaccaccactcccTCAGGCCCCTCTCCTTGTCCCATGAGCAGATCAGCCTGCCAGAGCACCACAGGGAGGGGGCCAGCTCCCCGGACTTCACCCAAGAGATGGGGAGACGTGCTGGACAGAGGGCAGGGGGGACTGGGGGCCTGTCCCGGAGCAAGTCCCAGCCCTGCGTCCTGAACGATAAAAAGATTGGCATGAAGCGCAGGAGACCAGAGGATGCACAGGAACCACGGCCCTCCctggacctggccaagatgaccCAGAAACTCCAGACGTTCCACAGCTTGAGCTGCCCTGGGTTCTCTGGTCCGGACAGCTGTCGCTCATACATGCCCCCGCCCTCCACCAGGAGCTTGAGCCAATCGGAATCTGACTTCGCCTGTGCGTCTGACCTATGTGCTGAGACTCAACAGGAAGtggacgaggaggaggatgacTCTTCTTATAAAGAGCTGGACAGTGACTCAGCGTGTAGCCTGGACTCCAGGCCCGGGTCCCCAtgcaggggagggggggagagaatggGGCAGGGACACACCCCCTGGAAGGGTGAGTATGGGACAGAGAAGGACATCTACCAGCTGGGGGGTGAGCTGGACATTGACCAGATCGAGAGGAACTGAATGCAACCTGAAGCCTTTGGATAAAGGATTGTCATAACCTTTTGTGAAGGCTGAGGAATGTTTCCGAAGGATTGCAGGAGAATTTGGAATTTCATGACCACGAGAAGGATGCCTTATGTATGATAGGTGGATATTGAGCAGGTTGAAATGACCTCAGAGAGAGGAACCTAGCGATTTTAGACAGTGGTTTTTGGAACATTATAAGGATGTTTGTAaatgcagtgggggggggggttgtattgtGTGTAATGTCAACGAAGGACAAAGCACGTGGAAGTGTCAATAGAAGGTGTTGCATGTTGAATTGGCAGATGGCTTCTTTGGTTGAACTTTGAGATCCTGCAGAACAAACAGTTGTTTTGAACTGTCTCGTTGTCTTTCTGAATCTAAAGGCAGTGGCTTTCGCTTGGCGACGTGCAGCCTAACTCAGGAGTGGGAAAGTGAGGGATAGTCTTTAATACCTCCAAAAAGCCCTCTCTCCTCTTAGCCTGAGTACCTCCCTATACACCTGGACTGAACTGCAGCAGGAATATGCTACAACTTCTGCTTTTCTCTACCAGAATGGGGGGGGGACATGATGGAccgggagagagggatgaaatagaagaggagagaaacagtATTTTTTTCTCATAGACATCACCTTGACACTTTTCTTCAACTATACCTGCAGGAAGGACACTCCCTGTTGAATTCCAAGTTAGCCCTTAGCCTCTATACCCTAGCCCCTATACTCTAGGCACTCCTGTAGATATGAAAGGAAGATGGTACCAGTATTATGGTCATTTCTTCACCTTCCCTTCTAACAGGCGGTGTGGAGTTTTCACCATATTGCTTACCTATCCAAGGGTTTCAGATTGCCTAGGGGATAGGGGTCAATTTGGAATTCCGAAGGTGTTCACACACCATCGCTGAATGTAAATAAGCTTTTAATGGGTTTGGAAATAACAGGCCATTTGGTCGGTCAGATACATGTGTTGTCTTTACACCTCAGAATACCCTACTCGAAACAAACCTTTTGTGACGTTTAATAGATTCTAATATGCAAAATGTATATTTGAATAAACACTGAGTTTTAAGTTTTCAGTTCTAATATCAATGTATatttttctaaatgtattttttttatgatCTGTTTGTGAAGGATCTGAATTAAGAGGCTTTTCTTTAACAGGATAGAcatgaaataaaaacacaaacTGCC
>XM_036985385.1
GAAAGATTCGAAGAGGAGGATTCAGTAAAGAGTGAGCCTGTGCTGTACTGTGTTTGTGGTGTCCCAGCCCAGTGGACTGACTGTATGTGTTTAGACTCGTCTCTCTAAGGGCCCTACTGCCTGCTATACAGACACACCCACAAGGACCaatcctcctttcctcctcgcCCTGCGCCTGGGGACACACTGGTGGTGTGATGGGATTGGCTGAATAGCGAGAGACGCTCCCCTACCAACGAGGACACTCTGCGGATGAGAGGTGGTCGTCTGCCCGTCCAAACTGCCCAAAAGACCATCTCCCCATCCGTCCTCACCTAAGATGGCTTCCCACGGCCTTCTCCTGCACTGGAACGGACTGGAGCAGAGCTGTGCCCTACCATGGTGATCATCTTCTCAAAAACACTGGAAAAGAAGAAAGGTGGCGATCATGTAAGGGCTAAGGACACTGAATATTTGCTGCTGCGTGAGCGCCACACCATGAGCAGAGGGACTACCCTCTTCTCCTGTGGCACTGTGGAGGCAGACAGGTGGCTGGAGCTTGGCCGAGGCTGTGCCATCCAGCGAGGGACGCCCTGCGAGTCCGGCGCCAGTCTGGAGAGCCTGTGGGATGTTCTGCCCGAGGAGTGCCAGCGGAGGAGCCTGGTCTGGGGCCACGAGGTTGGCCCTGCCACCGCCATCACCAGCCTCATTCGAGACCTTAACCTTGGCGATGCCAAGCTGGCAGCCACCCAGTCCCTGGCCCTCGCCAACTCCCCTTCAGCCTCCACGGCACCCCCTAGCAAGCGCCAGTGCCGCTCACTCTCCTTCTCAGAAGAGTTTGGTGGCTGCCGGTCTTCATGGAGACCTCAGGTGTCGCGAGTGTGGACGGCGGTGGAGAAGAGGAGGTGCCACAGTGGGGGGAGTGTGCATCGCTGCTCTGGAGGAGGTGGTATAGGAGGTGGTGGAGGTTATTCAGGGGGTCATTTTCCTGCCATGCAGCGGAGCTCCAGTTTCAGCCTACCCTCACGGTCCAACAACCCCACAGACGGGGCTTTGGAGCTTCCCTGCTTCACCCAGCGCCTACCCCTTCACCCCCTGTTCACTGCCTCCCCTACgtccccctcccaccaccactaccaccactcccTCAGGCCCCTCTCCTTGTCCCATGAGCAGATCAGCCTGCCAGAGCACCACAGGGAGGGGGCCAGCTCCCCGGACTTCACCCAAGAGATGGGGAGACGTGCTGGACAGAGGGCAGGGGGGACTGGGGGCCTGTCCCGGAGCAAGTCCCAGCCCTGCGTCCTGAACGATAAAAAGATTGGCATGAAGCGCAGGAGACCAGAGGATGCACAGGAACCACGGCCCTCCctggacctggccaagatgaccCAGAAACTCCAGACGTTCCACAGCTTGAGCTGCCCTGGGTTCTCTGGTCCGGACAGCTGTCGCTCATACATGCCCCCGCCCTCCACCAGGAGCTTGAGCCAATCGGAATCTGACTTCGCCTGTGCGTCTGACCTATGTGCTGAGACTCAACAGGAAGtggacgaggaggaggatgacTCTTCTTATAAAGAGCTGGACAGTGACTCAGCGTGTAGCCTGGACTCCAGGCCCGGGTCCCCAtgcaggggagggggggagagaatggGGCAGGGACACACCCCCTGGAAGGGTGAGTATGGGACAGAGAAGGACATCTACCAGCTGGGGGGTGAGCTGGACATTGACCAGATCGAGAGGAACTGAATGCAACCTGAAGCCTTTGGATAAAGGATTGTCATAACCTTTTGTGAAGGCTGAGGAATGTTTCCGAAGGATTGCAGGAGAATTTGGAATTTCATGACCACGAGAAGGATGCCTTATGTATGATAGGTGGATATTGAGCAGGTTGAAATGACCTCAGAGAGAGGAACCTAGCGATTTTAGACAGTGGTTTTTGGAACATTATAAGGATGTTTGTAaatgcagtgggggggggggttgtattgtGTGTAATGTCAACGAAGGACAAAGCACGTGGAAGTGTCAATAGAAGGTGTTGCATGTTGAATTGGCAGATGGCTTCTTTGGTTGAACTTTGAGATCCTGCAGAACAAACAGTTGTTTTGAACTGTCTCGTTGTCTTTCTGAATCTAAAGGCAGTGGCTTTCGCTTGGCGACGTGCAGCCTAACTCAGGAGTGGGAAAGTGAGGGATAGTCTTTAATACCTCCAAAAAGCCCTCTCTCCTCTTAGCCTGAGTACCTCCCTATACACCTGGACTGAACTGCAGCAGGAATATGCTACAACTTCTGCTTTTCTCTACCAGAATGGGGGGGGGACATGATGGAccgggagagagggatgaaatagaagaggagagaaacagtATTTTTTTCTCATAGACATCACCTTGACACTTTTCTTCAACTATACCTGCAGGAAGGACACTCCCTGTTGAATTCCAAGTTAGCCCTTAGCCTCTATACCCTAGCCCCTATACTCTAGGCACTCCTGTAGATATGAAAGGAAGATGGTACCAGTATTATGGTCATTTCTTCACCTTCCCTTCTAACAGGCGGTGTGGAGTTTTCACCATATTGCTTACCTATCCAAGGGTTTCAGATTGCCTAGGGGATAGGGGTCAATTTGGAATTCCGAAGGTGTTCACACACCATCGCTGAATGTAAATAAGCTTTTAATGGGTTTGGAAATAACAGGCCATTTGGTCGGTCAGATACATGTGTTGTCTTTACACCTCAGAATACCCTACTCGAAACAAACCTTTTGTGACGTTTAATAGATTCTAATATGCAAAATGTATATTTGAATAAACACTGAGTTTTAAGTTTTCAGTTCTAATATCAATGTATatttttctaaatgtattttttttatgatCTGTTTGTGAAGGATCTGAATTAAGAGGCTTTTCTTTAACAGGATAGAcatgaaataaaaacacaaacTGCC
>XM_036985376.1
CCATGAGCAGAGGGACTACCCTCTTCTCCTGTGGCACTGTGGCTTGATGCCTCGTTACAAGCTCCCCTATAACGGTTTctgcctgtcctcctcctgtctcaTCTCGCCCTCATGTCTGGTGTGCACCTGCCGTCACACAGAGCTGTGTACTGCACTCATGGGACTTAACTGTAACGGAGTGTTGTTTTGCCTTTGTCAATGGTTCCCTTTTGGTTCGGTGAACGTCATGCTCCTTATCCCCTCCGCCCGTGTTGAAAGACAAGCCACTGTAAATCAGAGTCTCATTGGACCCCGCCATGTCGTCTGTTCAATGTACCCGCGAGTGGTTAACGGGATGCACGTCCCACAActgctgtttctactgttacaACTGGCATCACAAGACGTGTTATATATACTATTGGCTTCAGAGGCAGACAGGTGGCTGGAGCTTGGCCGAGGCTGTGCCATCCAGCGAGGGACGCCCTGCGAGTCCGGCGCCAGTCTGGAGAGCCTGTGGGATGTTCTGCCCGAGGAGTGCCAGCGGAGGAGCCTGGTCTGGGGCCACGAGGTTGGCCCTGCCACCGCCATCACCAGCCTCATTCGAGACCTTAACCTTGGCGATGCCAAGCTGGCAGCCACCCAGTCCCTGGCCCTCGCCAACTCCCCTTCAGCCTCCACGGCACCCCCTAGCAAGCGCCAGTGCCGCTCACTCTCCTTCTCAGAAGAGTTTGGTGGCTGCCGGTCTTCATGGAGACCTCAGGTGTCGCGAGTGTGGACGGCGGTGGAGAAGAGGAGGTGCCACAGTGGGGGGAGTGTGCATCGCTGCTCTGGAGGAGGTGGTATAGGAGGTGGTGGAGGTTATTCAGGGGGTCATTTTCCTGCCATGCAGCGGAGCTCCAGTTTCAGCCTACCCTCACGGTCCAACAACCCCACAGACGGGGCTTTGGAGCTTCCCTGCTTCACCCAGCGCCTACCCCTTCACCCCCTGTTCACTGCCTCCCCTACgtccccctcccaccaccactaccaccactcccTCAGGCCCCTCTCCTTGTCCCATGAGCAGATCAGCCTGCCAGAGCACCACAGGGAGGGGGCCAGCTCCCCGGACTTCACCCAAGAGATGGGGAGACGTGCTGGACAGAGGGCAGGGGGGACTGGGGGCCTGTCCCGGAGCAAGTCCCAGCCCTGCGTCCTGAACGATAAAAAGATTGGCATGAAGCGCAGGAGACCAGAGGATGCACAGGAACCACGGCCCTCCctggacctggccaagatgaccCAGAAACTCCAGACGTTCCACAGCTTGAGCTGCCCTGGGTTCTCTGGTCCGGACAGCTGTCGCTCATACATGCCCCCGCCCTCCACCAGGAGCTTGAGCCAATCGGAATCTGACTTCGCCTGTGCGTCTGACCTATGTGCTGAGACTCAACAGGAAGtggacgaggaggaggatgacTCTTCTTATAAAGAGCTGGACAGTGACTCAGCGTGTAGCCTGGACTCCAGGCCCGGGTCCCCAtgcaggggagggggggagagaatggGGCAGGGACACACCCCCTGGAAGGGTGAGTATGGGACAGAGAAGGACATCTACCAGCTGGGGGGTGAGCTGGACATTGACCAGATCGAGAGGAACTGAATGCAACCTGAAGCCTTTGGATAAAGGATTGTCATAACCTTTTGTGAAGGCTGAGGAATGTTTCCGAAGGATTGCAGGAGAATTTGGAATTTCATGACCACGAGAAGGATGCCTTATGTATGATAGGTGGATATTGAGCAGGTTGAAATGACCTCAGAGAGAGGAACCTAGCGATTTTAGACAGTGGTTTTTGGAACATTATAAGGATGTTTGTAaatgcagtgggggggggggttgtattgtGTGTAATGTCAACGAAGGACAAAGCACGTGGAAGTGTCAATAGAAGGTGTTGCATGTTGAATTGGCAGATGGCTTCTTTGGTTGAACTTTGAGATCCTGCAGAACAAACAGTTGTTTTGAACTGTCTCGTTGTCTTTCTGAATCTAAAGGCAGTGGCTTTCGCTTGGCGACGTGCAGCCTAACTCAGGAGTGGGAAAGTGAGGGATAGTCTTTAATACCTCCAAAAAGCCCTCTCTCCTCTTAGCCTGAGTACCTCCCTATACACCTGGACTGAACTGCAGCAGGAATATGCTACAACTTCTGCTTTTCTCTACCAGAATGGGGGGGGGACATGATGGAccgggagagagggatgaaatagaagaggagagaaacagtATTTTTTTCTCATAGACATCACCTTGACACTTTTCTTCAACTATACCTGCAGGAAGGACACTCCCTGTTGAATTCCAAGTTAGCCCTTAGCCTCTATACCCTAGCCCCTATACTCTAGGCACTCCTGTAGATATGAAAGGAAGATGGTACCAGTATTATGGTCATTTCTTCACCTTCCCTTCTAACAGGCGGTGTGGAGTTTTCACCATATTGCTTACCTATCCAAGGGTTTCAGATTGCCTAGGGGATAGGGGTCAATTTGGAATTCCGAAGGTGTTCACACACCATCGCTGAATGTAAATAAGCTTTTAATGGGTTTGGAAATAACAGGCCATTTGGTCGGTCAGATACATGTGTTGTCTTTACACCTCAGAATACCCTACTCGAAACAAACCTTTTGTGACGTTTAATAGATTCTAATATGCAAAATGTATATTTGAATAAACACTGAGTTTTAAGTTTTCAGTTCTAATATCAATGTATatttttctaaatgtattttttttatgatCTGTTTGTGAAGGATCTGAATTAAGAGGCTTTTCTTTAACAGGATAGAcatgaaataaaaacacaaacTGCC

Function

NR:

description
protein FAM53B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985380.1 False 2895 mRNA 0.52 5 75155168 75182737
XM_036985385.1 False 2938 mRNA 0.52 5 75168562 75182737
XM_036985376.1 True 2831 mRNA 0.52 4 75169788 75182737

Neighbor

gene id symbol gene type direction distance location
LOC110529380 LOC106577038 coding upstream 42765 74996783 ~ 75112403 (+)
LOC110529343 LOC106577035 coding upstream 173636 74975235 ~ 74981532 (+)
LOC110529328 adam12 coding upstream 189313 74817707 ~ 74965855 (+)
c1h10orf90 cssa18h10orf90 coding upstream 342692 74792556 ~ 74812476 (+)
insyn2a fam196a coding upstream 445882 74682034 ~ 74709286 (+)
LOC110532673 LOC106577093 coding downstream 48001 75230738 ~ 75233988 (+)
LOC110529439 LOC106577042 coding downstream 93248 75275985 ~ 75311494 (+)
LOC110529485 LOC106577045 coding downstream 352265 75535002 ~ 75539343 (+)
LOC110529500 LOC106577048 coding downstream 432480 75615217 ~ 75648612 (+)
LOC110529506 LOC106577049 coding downstream 473850 75656587 ~ 75693011 (+)
G83982 NA non-coding upstream 7995 75146956 ~ 75147173 (+)
G83981 NA non-coding upstream 8508 75146207 ~ 75146660 (+)
G83980 NA non-coding upstream 9285 75145649 ~ 75145883 (+)
G83978 NA non-coding upstream 10913 75143916 ~ 75144255 (+)
G83977 NA non-coding upstream 12935 75140876 ~ 75142233 (+)
G84285 NA non-coding downstream 23232 75205969 ~ 75206222 (+)
G84291 NA non-coding downstream 30584 75213321 ~ 75213542 (+)
G84292 NA non-coding downstream 31546 75214283 ~ 75214633 (+)
G84507 NA non-coding downstream 201138 75383875 ~ 75384125 (+)
G84509 NA non-coding downstream 201534 75384271 ~ 75384504 (+)
G83979 NA other upstream 9656 75144864 ~ 75145512 (+)
G83829 NA other upstream 40978 75112660 ~ 75114190 (+)
G83836 NA other upstream 245362 74909225 ~ 74909806 (+)
G82111 LOC106577091 other upstream 1583431 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 4079066 71036440 ~ 71076239 (+)
LOC110529610 NA other downstream 1275387 76457821 ~ 76459823 (+)
G86019 NA other downstream 1449008 76631745 ~ 76635936 (+)
G86614 NA other downstream 1941198 77123935 ~ 77124427 (+)
G87159 NA other downstream 2387278 77570015 ~ 77570470 (+)
G89667 NA other downstream 4366280 79549017 ~ 79549651 (+)

Expression


Co-expression Network