LOC110532673 (LOC106577093)


Basic Information

Item Value
gene id LOC110532673
gene name LOC106577093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75230738 ~ 75233988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976165.1
AATCTGAGGGCAGGTGCAGTTTATGGGACAGACAGTTGACTAGTTTAACCAACGTTTAAAGAAGTGCAGAAAGTATGCCAAGTGACTACCCAGGTGCGTAATAGCGCGCGTGAGTTCTCGCCTCTTATCACTGATCAATTTGGAGGGATTTAAAAGGATGTTGGATTCCAATGAGTCTAATGTGAAAATGACATCTAGTCATAGGATTTCCTTTTCTATAATTGATATAATGGACCCAAATAAATTTAATAGCAAGAAGATACTCGAACTTTTCCCAACGAAGGATACGTATCCTTCGCAGAACTTACGAGTGGCACGTTTTGAAGAGGATGCTGGCGCAGATGGAGAGCCGCCACTTGTGCGCACGAAAGCAGCAGGTGAAGACACAGGGACTGACCACTCAAGTAGCGCAGATCTTAAGCAACAGGCAGCCGTCAACAACCCACTTTCAGTACACTCAACGACTGAGCCAGAGGAGCAAGAGGAGGGGGCCGGGGACAGCATCAGCAGCAGCGCCGGAACTTCAGCCACACATGACCCCTCGCCTCACAAACGGCGGCGCTCGGATCACGGTTGCGCCAAGCCGCGACGCGCCAGGACTGCCTTCACATACGAACAACTGGTGGCCCTGGAGAACAAATTCCGCTCTACGAAATACCTGTCAGTGTGTGACAGACTCAACCTGGCTCTGTCCCTTAGCCTCACCGAGACGCAGGTCAAGATCTGGTTCCAGAACAGAAGAACCAAGTGGAAGAAACAAAACCCGGGCGCTGACAACACGATGTCGCCTGGGGCGAACTCTTTGGTCAGCGTCAACCCATGTCCTGTGACTTGTGTCTCGAGTTCAGCCAGTTACCAAACTTTCCCGACCTTCAGCTCTGGGAATATGATCTTCCATACTGCCTCTGTTCCTTTGTCGTCCACAGGAGGGCTGTTACATCACTTCTTGCCCAATGGTTATCATTTCCAGCCGTCCTACTTTACCCCACATTTATGAGACCTGACCTACTTCGTCTATGGTGATTTGAGGATGGACACAACGAGATAGGATTATAACTAGGTATTGGACTCTCTCACAAAAGTGTAATTTTTAACACCGTCTGTTGAAGATGTCATGACAGACATTAGTCTGCACCCTCAAATGATAACCAGAAGAATAACTTCAGActcttcccactgggcaaaaactggttgaatcaatgttgtttccatgtcatttcaacccccCCCCAAATCAATGCGATGACGTTGAATTAACACGGAAAACTGAttagatttgcaaaaagtcatcaacataagggaatttCGTCCTTTTTTCACTCaaccttttaacctaaatccaatgaccacatttttggttgatttcaagttgaattcacattagttggcaactcaacaaaatgtaaatcaaaactagacgttgaactgacctctgtgcccagtgggttgttcgATGATGGAGAGAAATGTCGGGGCAGAGCCTTTTCTGGCACATGGGTGGTGAACAAGACTATTTGTCTTTACTGTATCTGATGATGTATACCAACAGTCCATGTGGAGATCTCGCTGTACAGCTGCTTATCGTGGAGGGCCAAATAAATATGCAAACCCGCTGTATGCAGATATCTACATAATTAAGATTCTTCAGTGTATGTAGGAACTGTAGAGATTGTTGGCCTGCCATAATGAACTTAACCAATATCCCGTTTTCTCTATCCCTGTATTTGACTCTATCTGGAGCAAAATGTGACATGATACAAACCATCTCTTCTTACTGTATGTTTGGGTCTGTCACTCACAAGATTTCACAGTTCATATCTGTCCATTTTAAAATGAACACATGTAAATTAAAACATATATGTAAAACACATATAGAGTCCTAATATTTgatgaattatgttttttttgttgttgctagtgTGAAGCAAGATGGAATTAATTGTTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K09309 NKX1; homeobox protein Nkx-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976165.1 True 1947 mRNA 0.44 2 75230738 75233988

Neighbor

gene id symbol gene type direction distance location
LOC110529425 LOC106577041 coding upstream 48001 75155168 ~ 75182737 (+)
LOC110529380 LOC106577038 coding upstream 118335 74996783 ~ 75112403 (+)
LOC110529343 LOC106577035 coding upstream 249206 74975235 ~ 74981532 (+)
LOC110529328 adam12 coding upstream 264883 74817707 ~ 74965855 (+)
c1h10orf90 cssa18h10orf90 coding upstream 418262 74792556 ~ 74812476 (+)
LOC110529439 LOC106577042 coding downstream 41997 75275985 ~ 75311494 (+)
LOC110529485 LOC106577045 coding downstream 301014 75535002 ~ 75539343 (+)
LOC110529500 LOC106577048 coding downstream 381229 75615217 ~ 75648612 (+)
LOC110529506 LOC106577049 coding downstream 422599 75656587 ~ 75693011 (+)
LOC110529516 LOC106577050 coding downstream 461444 75695432 ~ 75724153 (+)
G84292 NA non-coding upstream 16105 75214283 ~ 75214633 (+)
G84291 NA non-coding upstream 17196 75213321 ~ 75213542 (+)
G84285 NA non-coding upstream 24516 75205969 ~ 75206222 (+)
G83982 NA non-coding upstream 83565 75146956 ~ 75147173 (+)
G83981 NA non-coding upstream 84078 75146207 ~ 75146660 (+)
G84507 NA non-coding downstream 149887 75383875 ~ 75384125 (+)
G84509 NA non-coding downstream 150283 75384271 ~ 75384504 (+)
G84544 NA non-coding downstream 176085 75410073 ~ 75410272 (+)
G84547 NA non-coding downstream 179254 75413242 ~ 75413574 (+)
G84555 NA non-coding downstream 183110 75417098 ~ 75417406 (+)
G83979 NA other upstream 85226 75144864 ~ 75145512 (+)
G83829 NA other upstream 116548 75112660 ~ 75114190 (+)
G83836 NA other upstream 320932 74909225 ~ 74909806 (+)
G82111 LOC106577091 other upstream 1659001 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 4154636 71036440 ~ 71076239 (+)
LOC110529610 NA other downstream 1224136 76457821 ~ 76459823 (+)
G86019 NA other downstream 1397757 76631745 ~ 76635936 (+)
G86614 NA other downstream 1889947 77123935 ~ 77124427 (+)
G87159 NA other downstream 2336027 77570015 ~ 77570470 (+)
G89667 NA other downstream 4315029 79549017 ~ 79549651 (+)

Expression


Co-expression Network