LOC110529482 (LOC106577043)


Basic Information

Item Value
gene id LOC110529482
gene name LOC106577043
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75492016 ~ 75494664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611670.2
ACAATACTGTCTTTAGTCCAGAGCGCGTGGATGTAGACCAGGAATACATTCATGTTCCCTGAGCTCCAGGAAAAAACAACCCAAGCCCCTCAACTTCTAAAAACGGTTATCTAAAAAATACTATTTCCAAACTATTTTACGCAAGAGTTGTGAGTATTCACAGACCAACAATACGAGAAAAATAACACAAAAACTAAGATATAGCCTAATCTTACTGTTATGAATCGAGAATGAGTACCACAGAAGACAGCGGAAGCAAGTGCTCGTCGGCCCCAATTTCCAGTTTCACTATTCAGTCGATATTGGGCACGTCGTCGGAGAAGACACGGTCGGGGGCGAAGGAGAGTTCCAAGGGACTGCAGCTGGCGAGGAAGCGCTCGCTGTCGGTGTCTTCAGAAGAGGAGTGCAGCGGTGGGGAGGACTCTGCAGACTGTTTCTGTTCGGATCGTGGTCACAGCGAGCCATGCAACCGACATCAACCACTAAATTTTTCATGTTTAGGTTCAACAACGGGACTTATTTCTGTCCGTGACGGGATTGCACGGCGACCGCACCTGACACAGCCTCTGCTGCAGGATTACAAAGAGGAACAAGAGAGACCATGCAATCCAATGTCACCTATTTccgaggagagacagacagacggtgcGGACAAGCAGAGCAACTCGTCCAAGAAGAAGACTCGTACAGTCTTCTCGCGGAGTCAGGTGTACCAGCTCGAATCCACGTTTGATATGAAGAGGTATTTGAGCAGCTCCGAGCGAGCCTGTTTAGCATCTAGTCTACAGCTAACAGAAACTCAGGTGAAGACGTGGTTTCAGAACCGCAGGAACAAATGGAAGCGACAACTGTCGGCGGAACTGGAGGCCGCGAACATGGCACACGCCTCCGCACAGACACTGGTCGGAATGCCGCTTGTTTTTAGAGATAGCTCCCTGCTCCGGGTACCAGTTCCAAGATCTATCGCTTTTCCAACGCCACTATACTACCCTGGCAGCAGCCTACCAGGGTTACCATTGTACAATCTGTATAACAAGATTGAATATTGACTTAATGCCTGTGATGAGAGTCCACAAAAATAACACGTTAACACACTACAGTAGCCTACATTCGTATAAATGTCTGGCATAACTCATGTCTATTATATCACTTTATttgttgaaaatatatatttcttattATGCAGCAACTGTATGTTTAACAGGAAGCAACAAACGTATCTAAATGTATAAAATACACCATGTGTATAATCATTATTTTGTACCTTGATTTTGCGTTCTCCCTCGTTTAACACGTTAAATTGGTGAATTTCGCCACTGCAATACAGATGTAATCAAGTGGACTATGTTTCCCAAACGAATTCTGGatgcattaaaaaaaaacgttttcaatTGAATGTGAATATGAAATATTGAGGTCCAAGACGTCCAACTACCTTCATCTGTTAAGCTACTAGAATACATTGGGTTTATACATTTGGGGATAGGGAAGTGCAAACTCGTTGCTTACATTTGGGGATAATGTCATTGTTTTTATTGTAATCATAGGCCTACCAAGTAAACCACTCATTCAATAAATTTTCTATATCAATGAAA

Function

NR:

description
homeobox protein HMX2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611670.2 True 1595 mRNA 0.43 2 75492016 75494664

Neighbor

gene id symbol gene type direction distance location
LOC110522123 LOC106577094 coding downstream 143672 75345113 ~ 75348344 (-)
LOC110529412 LOC106577039 coding downstream 343226 75135010 ~ 75148790 (-)
LOC110529369 LOC100380861 coding downstream 358744 75112641 ~ 75133272 (-)
edrf1 LOC106577037 coding downstream 495248 74982256 ~ 74996768 (-)
fank1 fank1 coding downstream 516908 74971772 ~ 74975108 (-)
LOC110529484 LOC106577044 coding upstream 6046 75500710 ~ 75503281 (-)
LOC110529486 LOC106577095 coding upstream 61481 75556145 ~ 75574946 (-)
vkorc1 LOC106577046 coding upstream 114683 75609347 ~ 75612396 (-)
ccser2a ccser2 coding upstream 829867 76324531 ~ 76399997 (-)
LOC110529591 fam149b1 coding upstream 949744 76444408 ~ 76452168 (-)
G84551 NA non-coding downstream 77350 75414330 ~ 75414666 (-)
G84546 NA non-coding downstream 78966 75412837 ~ 75413050 (-)
G84518 NA non-coding downstream 97340 75394443 ~ 75394676 (-)
G84510 NA non-coding downstream 106497 75385307 ~ 75385519 (-)
G84407 NA non-coding downstream 235699 75256005 ~ 75256317 (-)
G84701 NA non-coding upstream 27631 75522295 ~ 75522527 (-)
G84704 NA non-coding upstream 29402 75524066 ~ 75524276 (-)
G84717 NA non-coding upstream 37604 75532268 ~ 75532479 (-)
G84721 NA non-coding upstream 40401 75535065 ~ 75535397 (-)
G84720 LOC106577045 non-coding upstream 42352 75537016 ~ 75537571 (-)
G83429 NA other downstream 919227 74572447 ~ 74572789 (-)
LOC110528794 LOC106576993 other downstream 3240098 72202814 ~ 72251918 (-)
G80957 NA other downstream 3280927 72207929 ~ 72211089 (-)
G79904 NA other downstream 3748207 71743045 ~ 71743809 (-)
G84713 NA other upstream 33679 75528343 ~ 75528903 (-)
G85866 NA other upstream 838804 76333468 ~ 76334136 (-)
G86063 NA other upstream 1026421 76516251 ~ 76523481 (-)
G86132 LOC106577062 other upstream 1112018 76606682 ~ 76608354 (-)

Expression


Co-expression Network