LOC110529484 (LOC106577044)


Basic Information

Item Value
gene id LOC110529484
gene name LOC106577044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 75500710 ~ 75503281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611685.2
AGCCTACAACCAAAGCGCAAAGTGAGGGTGGACTTCGTTGTTATCGTGTAGCCTacacccccactctctctctacctcgctctctctctctctgcccgtctctctccccctcgttctACTTCCCATCTCTTCCTTAATCCCATTTGCCATTGTACGTGCCCAATCGCCGTATACTTTCCGCATTTAACTTGGATGACATTTTTATTTCATCATTAGCATCCGGCGCCAGACTGACGCGGTGGACACAGTTGCATTTTGACAAAGGAACGCACAAGACTTGGATGCAATACTGATATTATTTTGTCCTCTCTGAAGACTATTTGCTTTTCTgatctgtatttattttttacgtTCTCGATCAACTACGTAATCAAGAAGATATTCCGCATTTCAAACATCGCAGAGAAGGACAGTTAGTCCTACCAGTTTATAATATCCCTCTTTCTAAGTGAGACTTTGTTAATTCCAGTCTTTTAACACTTACATTTGTGGTCTACGGCATTCGGACCACAACCTCCAAGCAGCAATGCCCGAGACGGCGCAAGAGACGTGCACTCCGGTGAAAGACTCTCCCTTCTTCATTAAGAACTTACTTAACTGTGATAGTAAACCATCCAAACCGAAGCCCATCTTCGCCTCGGCAAAGGCGGCGTTTGAAGGGGGCTTTTCCCTATCCCAGGTCGGGGACTTTAACTTCCCTCGCTTTGAGTTACCCACACAGAGGTTTGCCTTACCGGCGCACTATCTGGAGCGAGCCTCAGCATGGTGGTATCCCTACACGCTCAGCGCAGCCAGTCATCTACACAGAACGGAAGTTGCCGAGAAGGCAAGAGCAAGAGACTCTTCTCCAACCTCAGGCACGGACCGCGACTCGCCAGACCTGGTGCTCAAATCCGATCCAGACGGTAAAGAAGACGAGGACAACAAAAGTGGCGATGAAATAGTTCTAGACGAGAGTGATTCTGAGGACACAAAGAAAGACAGTGGGGTAGACGACAGGAAGAAAAACGAGGACAGTGACGAAAAGAAAGCATGTCGAAAAAAGAAAACACGCACCGTGTTCTCCCGGAGTCAGGTGTTTCAGCTTGAGTCCACCTTTGACATGAAACGCTACTTGAGCAGTACCGAGAGGGCCGGATTGGCTGCGTCATTGCACCTGACAGAGACACAGGTAAAGATTTGGTTCCAGAACAGAAGAAATAAATGGAAGAGGCAGCTTGCCGCTGAACTAGAGGCTGCCAATCTGAGCCACGCCGCTGCACAGAGGATAGTGCGAGTGCCCATCCTCTACCACGAGAACTCTGCCTCAGAGACTGGCAATGCAACCGGCAACGTTCCTGTGAGCCAGTCGCTCCTTACCTTCCCCCACCATCTCTATTACTCTCACCCAATCGTCACCTCTGTGCCACTACTCAGACCTGTTTGAAAAACAAGACGTTGTTATCTATATTCCTAACTCGTAGGCCTACAGAACATTACACAAGACAAACTAAAACAATATTTTTCTAaagaagaaaatacaaataaaaaaatagaccTATAATTTCTGTTAAAGAGGATATATTGTGCATTTTTATATTAGGGTGAAGTTTACATTTTGTCTGGCATAATTTCACGCCAATAGCATATTGTTCTTATTAAAAATTAATATTACGGAGTTAACACTGCCCCAAAATACATTTCAGGAACTCTGCCCCCCACTCCCCCCTTCAAATTAATGTAATGTCTTATGATAGCATTCTAGCGCATGGGGTCGTAGCATTTGACCCCAACTGGTGTTTTCATTGTGTTTTCTCTTTTCTCAGCCATTTAGGAATATCGAATATCGAACGGGCTCAACACTCTTTACTCAAAGCGCTTTAAAAGGGGACAATCAAGATACGCTGTTTAATGTACAATATAATTGTAGCTTATAGGCTTATTGTTTTGATGTACTGATTCTAATTTCTGCTTCCTCGACAATGTCCTTATAGCACAATTAAGAATTGAATGTCATTACTTTTTGTGTTTTTGAAACAATAACATGATGTACAAATGTATATGGATATATTTAATCGAGTCAATGAAATGAGCTACCTGTTGACACTATTCCTTTGTAcagaaaaaaaaacgttttgatATTGTATTGCTGAATTCTGTTGTGAAATAAATGGAGATTATTCCATTCTTAAATA

Function

NR:

description
homeobox protein HMX3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611685.2 True 2174 mRNA 0.43 2 75500710 75503281

Neighbor

gene id symbol gene type direction distance location
LOC110529482 LOC106577043 coding downstream 6046 75492016 ~ 75494664 (-)
LOC110522123 LOC106577094 coding downstream 152366 75345113 ~ 75348344 (-)
LOC110529412 LOC106577039 coding downstream 351920 75135010 ~ 75148790 (-)
LOC110529369 LOC100380861 coding downstream 367438 75112641 ~ 75133272 (-)
edrf1 LOC106577037 coding downstream 503942 74982256 ~ 74996768 (-)
LOC110529486 LOC106577095 coding upstream 52864 75556145 ~ 75574946 (-)
vkorc1 LOC106577046 coding upstream 106066 75609347 ~ 75612396 (-)
ccser2a ccser2 coding upstream 821250 76324531 ~ 76399997 (-)
LOC110529591 fam149b1 coding upstream 941127 76444408 ~ 76452168 (-)
LOC118964475 LOC106577059 coding upstream 962682 76465963 ~ 76467210 (-)
G84551 NA non-coding downstream 86044 75414330 ~ 75414666 (-)
G84546 NA non-coding downstream 87660 75412837 ~ 75413050 (-)
G84518 NA non-coding downstream 106034 75394443 ~ 75394676 (-)
G84510 NA non-coding downstream 115191 75385307 ~ 75385519 (-)
G84407 NA non-coding downstream 244393 75256005 ~ 75256317 (-)
G84701 NA non-coding upstream 19014 75522295 ~ 75522527 (-)
G84704 NA non-coding upstream 20785 75524066 ~ 75524276 (-)
G84717 NA non-coding upstream 28987 75532268 ~ 75532479 (-)
G84721 NA non-coding upstream 31784 75535065 ~ 75535397 (-)
G84720 LOC106577045 non-coding upstream 33735 75537016 ~ 75537571 (-)
fank1 fank1 other downstream 527389 74971772 ~ 74975108 (-)
G83429 NA other downstream 927921 74572447 ~ 74572789 (-)
LOC110528794 LOC106576993 other downstream 3248792 72202814 ~ 72251918 (-)
G80957 NA other downstream 3289621 72207929 ~ 72211089 (-)
G79904 NA other downstream 3756901 71743045 ~ 71743809 (-)
G84713 NA other upstream 25062 75528343 ~ 75528903 (-)
G85866 NA other upstream 830187 76333468 ~ 76334136 (-)
G86063 NA other upstream 1017804 76516251 ~ 76523481 (-)
G86132 LOC106577062 other upstream 1103401 76606682 ~ 76608354 (-)

Expression


Co-expression Network