XLOC_019809 (si:ch211-218m3.9)


Basic Information

Item Value
gene id XLOC_019809
gene name si:ch211-218m3.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40248120 ~ 40250500 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038980
AAGTTTGTATACAAGTAACTCTTCACACTAAGGCAACTGTGACTTTATTAGGCAACATATGAGTCAAAATTTGAAAGCAGTTAATCAACTACGTTTGCAATAAAATCGACAGCAATGGATAACCTGACATTCAGACACAGCGTTCTTCTAGTGGAGGGACTTCAAGTTACGCCTCAGTCTACCTATGTGGTTTTTGTTCTGCTACTTATTGTGTACATCTTTATTATGGTTGCCAACATTACACTTGTAATTCTAATCTCAACTGAGAAGAATCTACATCATCCTATGCATTTTCTGTTTTGTAACTTGCCGCTGAATGACATTTTAGGGACCACCGTCATTTTGCCACGCTTACTTCGGGATGTTTTAATAGAAACTTCAGATCGCTATATCACATTTAATGAATGTGTTACTCAAGCATATTTTGTGCACATTTTTGTAGCAGCATGTCATTATGTTCTTATTATAATGGCCTTCGACAGATATGTGGCCATTTGTAATCCACTGAGATACACAGCGATAATGACCAATAAGATGGTTATGAAACTATCAGCAATAGCATGGGGATTGTCAGTTCTTATGGTGTCTATTCTGTTAGGCCTCACAGTGCGACTGTCTCACTGCAGATCGAAAATTGAAAACCCTTTCTGTGATAATGCCTCACTGTTTAAGCTGTCCTGTGATGAAGGTGTCGCTGTGAATAATATCTATGGGATCATTTATACTGTGGTTTTGTTTACCTTCTCAATTTTGTCTATATTTATAACATATGGCAAGATTGCCGCTGTATGCATAACCAGCAAAAACAAAGCACTCAACAGCAAAGCCATAAAGACCTGCAGCACTcatttagctgtttatttaatCATGTTTGTTTCTGGTTCCACTTTCATTTTTCTCCATCGTTTCCCTCTCTACTCAGAAAGCAGGAAACTAGCTAGTATAATGTTTCATATTGTACCCCCAGGATTAAATCCATTAGTTTATGGTTTACAAACCAAAGAGATTAGACAAAAGTTTGTGAAAATCTGGCGCAGAGAAAAAGAATCATCTTAATTCATTACACCATTAAACAACATTATACACTGGTTTCAGCACTCAAAATGTTGAATCAGTGCTGTTTACAGACTATTTTTTTTTGGATCAATAAATATCAGTCATGTGTTAAAAATGCTAATATGATAATAAAGTCTTTAGTAACTGCTTTCCAACTTATTAGAACTAATAGTTATTTTGATGTTTCCTCAACAGACATTCTGCTGACAAAACGTTttcacatacatataaatatatcctattcatttaaatgtacagtAGAACATTAATGATTTATAATTGTTATTCATGCATTCAATTTATCCAGGCTAGATTACAGTAATGCTCTATATGCAGAATTAACCATTCAGTCTTCCATATCACATTTACAACTGGCACAGAATGCTGCTGCTCGGTTTCTGACAGGGACAAAAAAGAGGGAACATATTACCACTGGGTTAGCTATACTTTAACGGCTACCTACTTTTGAATATAATGCACAACATTGTCTTGGTCCAACTCACAATTAAGATCTTCAATTCTTTTCTTCTGGGAGAACCCTCCAATCATCCTTCCAGAAATGATTGATTATCCCAGCATTAGAGCAGAGCTTTTTCAGTTCTTTGTCCTATATAAATAGGTGCTATATGAATAGACTTGATCTTTACCTAATCTAGCGTTTATTAGTTCAATGAGAATTATCTGACATGTAGTAGCAAACTTTTTTCAACCAATAGAACATTTAAGGGAAACTATCAAATAAATTGAATAGAAACTCATTATTTGCTTAACCATTTAAACTCTGCTGCagttttgggatttccgcctggatttcgcctacccaaatttaaaagcttcccaaatccacatgcagagatgtaaatgcaaaaatgtggtatcattttaaagaaaaccctttgaatttttttataaaacactattgaaagtgtttaaaataactgtatatgttgtctgtgtaaTAATA
>TCONS_00039689
ATGGATAACCTGACATTCAGACACAGCGTTCTTCTAGTGGAGGGACTTCAAGTTACGCCTCAGTCTACCTATGTGGTTTTTGTTCTGCTACTTATTGTGTACATCTTTATTATGGTTGCCAACATTACACTTGTAATTCTAATCTCAACTGAGAAGAATCTACATCATCCTATGCATTTTCTGTTTTGTAACTTGCCGCTGAATGACATTTTAGGGACCACCGTCATTTTGCCACGCTTACTTCGGGATGTTTTAATAGAAACTTCAGATCGCTATATCACATTTAATGAATGTGTTACTCAAGCATATTTTGTGCACATTTTTGTAGCAGCATGTCATTATGTTCTTATTATAAGCCTCACAGTGCGACTGTCTCACTGCAGATCGAAAATTGAAAACCCTTTCTGTGATAATGCCTCACTGTTTAAGCTGTCCTGTGATGAAGGTGTCGCTGTGAATAATATCTATGGGATCATTTATACTGTGGTTTTGTTTACCTTCTCAATTTTGTCTATATTTATAACATATGGCAAGATTGCCGCTGTATGCATAACCAGCAAAAACAAAGCACTCAACAGCAAAGCCATAAAGACCTGCAGCACTcatttagctgtttatttaatCATGTTTGTTTCTGGTTCCACTTTCATTTTTCTCCATCGTTTCCCTCTCTACTCAGAAAGCAGGAAACTAGCTAGTATAATGTTTCATATTGTACCCCCAGGATTAAATCCATTAGTTTATGGTTTACAAACCAAAGAGATTAGACAAAAGTTTGTGAAAATC
>TCONS_00039261
ATGGATAACCTGACATTCAGACACAGCGTTCTTCTAGTGGAGGGACTTCAAGTTACGCCTCAGTCTACCTATGTGGTTTTTGTTCTGCTACTTATTGTGTACATCTTTATTATGGTTGCCAACATTACACTTGTAATTCTAATCTCAACTGAGAAGAATCTACATCATCCTATGCATTTTCTGTTTTGTAACTTGCCGCTGAATGACATTTTAGGGACCACCGTCATTTTGCCACGCTTACTTCGGGATGTTTTAATAGAAACTTCAGATCGCTATATCACATTTAATGAATGTGTTACTCAAGCATATTTTGTGCACATTTTTGTAGCAGCATTTCTTATGGTGTCTATTCTGTTAGGCCTCACAGTGCGACTGTCTCACTGCAGATCGAAAATTGAAAACCCTTTCTGTGATAATGCCTCACTGTTTAAGCTGTCCTGTGATGAAGGTGTCGCTGTGAATAATATCTATGGGATCATTTATACTGTGGTTTTGTTTACCTTCTCAATTTTGTCTATATTTATAACATATGGCAAGATTGCCGCTGTATGCATAACCAGCAAAAACAAAGCACTCAACAGCAAAGCCATAAAGACCTGCAGCACTcatttagctgtttatttaatCATGTTTGTTTCTGGTTCCACTTTCATTTTTCTCCATCGTTTCCCTCTCTACTCAGAAAGCAGGAAACTAGCTAGTATAATGTTTCATATTGTACCCCCAGGATTAAATCCATTAGTTTATGGTTTACAAACCAAAGAGATTAGACAAAAGTTTGTGAAAATC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-94 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000094505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038980 False 2020 mRNA 0.35 2 40248120 40250500
TCONS_00039689 False 786 lncRNA 0.37 2 40249111 40250025
TCONS_00039261 True 789 lncRNA 0.37 2 40249111 40250025

Neighbor

gene id symbol gene type direction distance location
XLOC_019808 slco2b1 coding downstream 73443 40139036 ~ 40174677 (-)
XLOC_019807 slc13a5a coding downstream 164553 40053666 ~ 40083567 (-)
XLOC_019806 med31 coding downstream 198478 40045224 ~ 40049642 (-)
XLOC_019805 BX248108.1 coding downstream 207942 40021263 ~ 40040178 (-)
XLOC_019804 slc47a2.1 coding downstream 232590 39992151 ~ 40015530 (-)
XLOC_019810 or101-1 coding upstream 63377 40313877 ~ 40317054 (-)
XLOC_019811 CR847523.3 coding upstream 87533 40338033 ~ 40348790 (-)
XLOC_019812 nup98 coding upstream 103043 40353543 ~ 40398932 (-)
XLOC_019813 nsrp1 coding upstream 152008 40402508 ~ 40413191 (-)
XLOC_019814 NA coding upstream 278287 40528787 ~ 40579807 (-)
XLOC_019802 NA non-coding downstream 323676 39923770 ~ 39924444 (-)
XLOC_019801 NA non-coding downstream 336013 39905903 ~ 39912107 (-)
XLOC_019794 NA non-coding downstream 885944 39359151 ~ 39362176 (-)
XLOC_019793 NA non-coding downstream 911024 39328103 ~ 39337096 (-)
XLOC_019791 CU442763.1 non-coding downstream 980814 39267225 ~ 39267306 (-)
XLOC_019825 CU570984.1 non-coding upstream 1000931 41251431 ~ 41251548 (-)
XLOC_019828 CABZ01034722.1 non-coding upstream 1101045 41351545 ~ 41351665 (-)
XLOC_019831 NA non-coding upstream 1340370 41590870 ~ 41593163 (-)
XLOC_019838 NA non-coding upstream 1793474 42043974 ~ 42048805 (-)

Expression


Co-expression Network