LOC110529637 (LOC106577060)


Basic Information

Item Value
gene id LOC110529637
gene name LOC106577060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76479199 ~ 76496251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612021.2
ACCACCAGATGGCGAGCCGAGGACCGATGACACGCCGAGGCGAGGATAAGAGCGACTGGAGGTTGGGGCTGTCATAAACGGTACCAAAGCAACGAGCAGGGACACCTTTCGAGAGCTTGCGAGCGGCTGCCGGGAATATATTTTGGCCACCGGAGTGTTTTTGTGCCACCGTTCCAAGACAAGTCTCTCTTATCATTTCGtaTGTCCAGGATGGAGCGACAGTGTTGGTGGTATTTACTGGTGTTGAGCTGCCTGTTCCAGACTCTTTCAGCCCACAGTGACTTTTACACATCCATCGGTCACATGACAGATCTGTTGTACACAGAGAAAGACTTAGTCACTTCACTGAAGAATTATATCACGGCAGAGGAGAACAAGCTGAAGCAGGTTAAACAGTGGGCAGAGAAGCTGGATGTGTTATCAGCCATAGCCATGCAGGACCCCGAGGGCTTCCTGGGAAACCCAGTCAACGCCTTCAAACTGATGAAGAGGCTGAACACAGAATGGGGAGACCTGGAGAGCCTGGTGCTGAAGGACACCAAGGAAGgaTTCATCTCTAACCTGACCCTCCAGAGGCAACACTTCCCTACCGACGAGGACCAGACAGGTGCAGCCAAGGCACTGCTCAGACTGCAGGACACCTACAGACTGGACACCAACACCATCTCTACAGGAGACCTGCCAGGAGTGACGCACAAGAGCCCTATGACGGTGGAGGACTGCTTTGAGCTGGGGAAGATTGCCTACAGCGAGGTGGACTACTACCACACAGAGCTGTGGATGGAGCAGGCCCTGAAGCAGCTGGACGAAGGAGAGGAGTCCACCGTGGACAAGGTCACCGTGCTGGACTACCTCAGCTATGCTATTTACCAGCAGGGAGATCTAGGCAGGGCCCTGGAGCTCACCAAGAGGCTACTCATGCTGGACCCGGAACACCAGCGTGCCAACGGCAACCTGAAGTACTTTGAGTTTCAACTGATaaatcagaggaaggcccaggcCCAGGAGGCCCAGAAGGCCCGGGAGGAGGGCAAGGAGCGAAGGAAGAGACTGACGAGTGATGCCTCCAAGAAGAAGCGCTTCAGGGAGCCTGTCCCAGAGAGGAAGATGTATGAGATGCTGTGTCGAGGGGAGGGCATCAAGCTGACCCCCCGCAGACAGAGACGGCTTTTCTGCCGTTACTTTGACAACCACGGTCACCCCAAGTACCTCCTGAGCCCGGTGAAGCAGGAGGATGAGTGGGACCGGCCCTACATAGTCCGCTACCATGACATCATCTCTCACGGCGAGATCGAGAAGGTCAAAGAGCTGGCCAAGCCCAGACTCCGCCGGGCCACCATCTCCAACCCCATCACTGGTGTGCTCGAGACTGCCCCCTACAGGATCAGCAAGAGTGCATGGCTGACAGCGTATGAACACCCAATGATTGACCAGATAAACCAGCGGATTGAGGACCTCACAGGTCTGGAGATGGACACTGCGGAAGAGTTGcagGTTGCAAACTATGGTGTGGGTGGGCAGTATGAGCCCCACTTTGACTTTGGACGGAAAGATGAGCCTGATGCCTTCAAAGAGCTGGGCACTGGAAACCGCATAGCCACCTGGCTTTTCTATATGAGTGACGTGGCAGCAGGAGGTGCTACAGTATTCCCAGATGTGGGTGCTGCAGTATGGCCCAAAAAGGGGACTGCAGTGTTCTGGTACAACCTGTTTCCCAGTGGGGAGGGAGACTACAGTACAAGGCACGCAGCCTGCCCAGTATTGGTGGGCAACAAGTGGGTATCTAACAAATGGATCCATGAAAGAGGGCAGGAGTTCCGGCGACCCTGTGGCCTGAATGAGACTGCATGATGGGGGAAGGCTTTCCCTTCCAcgcccctcttcctctaccccgctcctcctctatccctctcctcctgtacCCCTTGCTTTCTCTTCAACCCCAGGGCCTGAGAGCACTGCTGTGGATGACAGGCCGTGAAAAGGGGGCCATTGgcatccctccttctcctcctcttcctccctccttcacgTCATCCATTCCTTACCCCAGCTCTGTACCTCTCTGAGCCCAGGATGTTTTGGGGCTTTCAGCTTGGACAGTATTAGTGGTGTTCTGACTGACATGGTGCTCTCATGGCTCTTTGATATGTCTCAAGTGAACACGTTGTGTGTTCACCCTTATGTCTTTGTTTGCACTCTTTACGGGCTCTGTACACAGCAAAAATGGTCATTTCAGAGCACAGGTTCTGCGTCTTGCTCTGTTCTAATGTAAATAATATGTCCTCTCTAAGTGCATGTCCATAGTATGCCATGGACTGTTTTCTCAATTCAGGTCAAGTGTTCACTCCATCTCTTACTTCAATACTGATGTCGCTCCAGTTTATACTAACATATCTCTCtcaaaaacacacaccacacacactccaacactcccacATACAGCACAGACAATCTTAGGTGACGTTTACCTGTTTATAGCTGAGGTATCATTTGTGTATTGTTTTTTAAGATCTGGTTTGGTATTTAACTGACTTTGGATTTGAATACTCACTCACATTTTTAACAGAACATTTGATTCTTTGGCCATACAGATGAGTTGCACTTCCCCATTTGTGTGatggaaaagagggagggagaaacattGGACATGCTGTCTTTAAAATCTTGGAAAATTCAATAAGATTCATGCAACCTTAAAGTGTATCAATGTGGGCCCATCCAAAAAAAGTTGTGGTGTTTTTTAGAAGGCAAGACAAATTATTTCTGGTGTTTTCCCCACTGAAAAGTATTGTAAGGCTTGTTTCTTTATGTAATACTATCTGGGGGCCTCAAGGAGAAACATGATATTTATATCTGACAAGATTCACCCATTGTGTGGTTTGTACGTCCTTTCAAATATGCAGGAATATTTTTGGAAGTGTGAAATTAATGTTTTCTATAGAAATAAAGTCTAAATGTCATTGCTA

Function

NR:

description
prolyl 4-hydroxylase subunit alpha-1-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612021.2 True 2969 mRNA 0.50 15 76479199 76496251
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966715 LOC106577078 coding upstream 1665 76475324 ~ 76477534 (+)
LOC110529610 NA coding upstream 19873 76457821 ~ 76459823 (+)
LOC110529603 NA coding upstream 21424 76452265 ~ 76457775 (+)
LOC110529567 LOC106577057 coding upstream 39127 76434261 ~ 76440072 (+)
LOC110529556 LOC106577056 coding upstream 45761 76420427 ~ 76433438 (+)
LOC110529651 LOC106577061 coding downstream 8120 76504371 ~ 76525418 (+)
LOC110529657 LOC106577062 coding downstream 35624 76531875 ~ 76624063 (+)
LOC110529681 LOC106577063 coding downstream 201067 76697318 ~ 76804833 (+)
LOC118966716 NA coding downstream 310034 76806285 ~ 76809565 (+)
LOC110532693 LOC106577081 coding downstream 316029 76812280 ~ 76864222 (+)
G85526 NA non-coding upstream 11839 76467077 ~ 76467360 (+)
G85525 LOC106577059 non-coding upstream 12533 76466203 ~ 76466666 (+)
G85522 NA non-coding upstream 27045 76451671 ~ 76452154 (+)
G85521 NA non-coding upstream 28263 76450726 ~ 76450936 (+)
G85519 NA non-coding upstream 29638 76449050 ~ 76449561 (+)
G85980 NA non-coding downstream 10223 76506474 ~ 76575201 (+)
G86199 NA non-coding downstream 212725 76708976 ~ 76709285 (+)
G86208 NA non-coding downstream 223248 76719499 ~ 76720099 (+)
G86226 NA non-coding downstream 242017 76738268 ~ 76769395 (+)
G86331 NA non-coding downstream 411342 76907593 ~ 76908823 (+)
G83979 NA other upstream 1333687 75144864 ~ 75145512 (+)
G83829 NA other upstream 1365009 75112660 ~ 75114190 (+)
G83836 NA other upstream 1569393 74909225 ~ 74909806 (+)
G82111 LOC106577091 other upstream 2907462 73551616 ~ 73571737 (+)
G86019 NA other downstream 135494 76631745 ~ 76635936 (+)
G86614 NA other downstream 627684 77123935 ~ 77124427 (+)
G87159 NA other downstream 1073764 77570015 ~ 77570470 (+)
G89667 NA other downstream 3052766 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 3255522 79720751 ~ 79765359 (+)

Expression

LOC110529637(LOC106577060) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110529637(LOC106577060) Expression in each Bioproject

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LOC110529637(LOC106577060) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network