Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529711 |
| gene name | LOC106607701 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 76935475 ~ 76938864 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: ubiquitin-conjugating enzyme E2 D4-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0031398 | positive regulation of protein ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| id | description |
|---|---|
| K06689 | UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612173.2 | True | 1180 | mRNA | 0.40 | 7 | 76935475 | 76938864 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532693 | LOC106577081 | coding | upstream | 71253 | 76812280 ~ 76864222 (+) |
| LOC118966716 | NA | coding | upstream | 125910 | 76806285 ~ 76809565 (+) |
| LOC110529681 | LOC106577063 | coding | upstream | 130642 | 76697318 ~ 76804833 (+) |
| LOC110529657 | LOC106577062 | coding | upstream | 311412 | 76531875 ~ 76624063 (+) |
| LOC110529651 | LOC106577061 | coding | upstream | 410057 | 76504371 ~ 76525418 (+) |
| LOC110529720 | NA | coding | downstream | 4686 | 76943550 ~ 77015372 (+) |
| LOC110529780 | LOC106577069 | coding | downstream | 88596 | 77027460 ~ 77048352 (+) |
| LOC118965545 | NA | coding | downstream | 348125 | 77286989 ~ 77287694 (+) |
| LOC100136692 | cdc2 | coding | downstream | 400790 | 77339654 ~ 77345543 (+) |
| LOC110529906 | LOC106577140 | coding | downstream | 442994 | 77381858 ~ 77451342 (+) |
| G86348 | NA | non-coding | upstream | 5044 | 76929156 ~ 76930431 (+) |
| G86347 | NA | non-coding | upstream | 7065 | 76927002 ~ 76928410 (+) |
| G86334 | NA | non-coding | upstream | 24045 | 76910745 ~ 76911430 (+) |
| G86331 | NA | non-coding | upstream | 26652 | 76907593 ~ 76908823 (+) |
| G86226 | NA | non-coding | upstream | 166080 | 76738268 ~ 76769395 (+) |
| G86491 | NA | non-coding | downstream | 403 | 76939267 ~ 76939744 (+) |
| G86494 | NA | non-coding | downstream | 2695 | 76941559 ~ 76941790 (+) |
| G86565 | LOC100136012 | non-coding | downstream | 95515 | 77034379 ~ 77035658 (+) |
| G86575 | NA | non-coding | downstream | 129318 | 77068182 ~ 77068404 (+) |
| G86579 | NA | non-coding | downstream | 132260 | 77071124 ~ 77071338 (+) |
| G86019 | NA | other | upstream | 299539 | 76631745 ~ 76635936 (+) |
| LOC110529610 | NA | other | upstream | 475652 | 76457821 ~ 76459823 (+) |
| G83979 | NA | other | upstream | 1789963 | 75144864 ~ 75145512 (+) |
| G83829 | NA | other | upstream | 1821285 | 75112660 ~ 75114190 (+) |
| G83836 | NA | other | upstream | 2025669 | 74909225 ~ 74909806 (+) |
| G86614 | NA | other | downstream | 185071 | 77123935 ~ 77124427 (+) |
| G87159 | NA | other | downstream | 631151 | 77570015 ~ 77570470 (+) |
| G89667 | NA | other | downstream | 2610153 | 79549017 ~ 79549651 (+) |
| acoxl | acoxl | other | downstream | 2812909 | 79720751 ~ 79765359 (+) |
| G91064 | NA | other | downstream | 3826250 | 80765114 ~ 80766155 (+) |
