LOC110529788 (LOC106577150)


Basic Information

Item Value
gene id LOC110529788
gene name LOC106577150
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77084874 ~ 77103340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612324.2
GAATGCACCCTATGCGGAATCTCCATAGTTACAATATTTGTCACATGACACAAACATGTAAACAGAGAATACTAGCCAAGGCCTACAGTAAAATATTTCTTATTTATTTTGCTGTCAGTGTAAAGCTAGGTATAGTTCTTCATATCTGTAAATATACACACGTGTGTGGGcgatggatttttttttatttgcctCAAATATCAAACTTTCCCGATAGATGTCGGGAGGAAGAACATTACAATTAATAAAATCGACTTGAGATGGGAGCAAGCGCCTCGATATCTCTCTGTAGCGACTCATCTGCTGTGAGAATTCGGAAGCACAATGCGAAGATCAGCCCTGAGCCGACTGTTCCAGGCCCTGACACCAGTCCTGTCTTTGGGGTAACCCTTGAGAGGCTGAGGGAAGATGGACAGCTTGTTTGTGGATTGCCCCACATGCTGCGACACATGGTGGATTGCCTGGACAGAAATGGTGTGCAGCAGAGGGGTCTGTTCCGTCTGTCTGGCTCTGTGGTAAGGACCAGGCAGCTGAGGCTGAtgtgggacaggggagagagaatggatcTGGTGGAGGAGGATGTCTCAAATGTGGCCTCCCTGCTCAAGCTCTTCTTCAGGGAGCTGCCCAGTCCCATCATACCAGAGCCTCAGCGCAAGGACCTGGTTCTCAGCCTCACAGAATGTAAGAATGAGGCAGAGTTGAACGCGGCTCTGAAAGAGAAACTCAGCAGCCTACCTGTCGACAACCACAGCATCCTGTCTTACCTCCTCCACTTCCTGTCAAGGGTGGCCTCTCACAGCCAATCAAATCACATGCCCGTGGAGAACCTGGCCACAGTCTTTGGACCCTGTATATTCCATGTTCCATCAGGGCCTGGGATGCTGGAAGAGCAGAGTGTGTGTAATGCCCTGTTACTCCACCTCCTGAGACATCAATCTGTTGTCTTTATCTGTCCCCCGGACCTTCCACACCCACCTCCTAGCCAGGACACCCCAtcaccacccccacccctcgcAGCCCTGTCCCATTTTGAGGTGAGACATGATAATGAATTTGTACTGTACATCTCTCCTTGGCGTCTGAGGATAGGCTTACAGAGGTTCATAATGTTTTCACTAAATTAACAATAGCCCTGACTCTGACCTTAAACCTTCAAATGCTGTTATCTTTAAGAAATTACAGGATATCCTGCTTCCCCTGACCCCTGTGAAGACAGGTGATGGGTTTCATTATGCATCATCCCACACCAGTGAACTCTGTTTACTTTGCAACAATAGATAATATCATACAGTATTATGGCATATTTCCACCTGAAACTTACCCCATTGTTTTACCATAAAGGCTCAACCTTTTGTGTTTCCACCTCCACGGCCCAGCTCCAGTGTCTCACAGGGTCATGGCCTCAGTGGACCTGCTCTGACTTAGGGCCAAGGCCAGGCCACTGGTACTTTTCAGCTggcatttacataacaatggctaaGAAACTCAcaaaggggtggcaggtagcccagtggttagagtgttggactagtaaccgaaaggttacaagattgaatccctgagctgataaggtaaaaat

Function

NR:

description
protein FAM13A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612324.2 True 1582 mRNA 0.48 5 77084874 77103340
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529688 LOC106577065 coding downstream 154428 76872092 ~ 76930446 (-)
LOC110529704 LOC106577064 coding downstream 213005 76863479 ~ 76871869 (-)
LOC118964475 LOC106577059 coding downstream 617664 76465963 ~ 76467210 (-)
LOC110529591 fam149b1 coding downstream 632706 76444408 ~ 76452168 (-)
ccser2a ccser2 coding downstream 684877 76324531 ~ 76399997 (-)
LOC110529797 LOC106577148 coding upstream 1026 77104366 ~ 77118912 (-)
LOC110529822 LOC106577147 coding upstream 25570 77128910 ~ 77142504 (-)
LOC110529831 LOC106577144 coding upstream 45031 77148371 ~ 77313800 (-)
tmem26a LOC106577143 coding upstream 248667 77352007 ~ 77356781 (-)
rtkn2a rtkn2 coding upstream 350370 77453710 ~ 77460660 (-)
G86802 NA non-coding downstream 12425 77072246 ~ 77072449 (-)
G86798 NA non-coding downstream 17924 77066398 ~ 77066950 (-)
LOC110529759 LOC106577068 non-coding downstream 36523 77045476 ~ 77084980 (-)
G86783 NA non-coding downstream 62249 77022352 ~ 77022625 (-)
G86492 NA non-coding downstream 146117 76936641 ~ 76938757 (-)
G86834 NA non-coding upstream 18467 77121807 ~ 77122039 (-)
G86836 NA non-coding upstream 20706 77124046 ~ 77124563 (-)
G86848 NA non-coding upstream 41895 77145235 ~ 77145437 (-)
G86859 NA non-coding upstream 89588 77192928 ~ 77234133 (-)
G86927 NA non-coding upstream 228359 77331699 ~ 77332026 (-)
G86448 NA other downstream 217276 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 476520 76606682 ~ 76608354 (-)
G86063 NA other downstream 561393 76516251 ~ 76523481 (-)
G85866 NA other downstream 750738 76333468 ~ 76334136 (-)
G87090 NA other upstream 375263 77478603 ~ 77479939 (-)
G89418 NA other upstream 1946471 79049811 ~ 79050491 (-)
G90081 NA other upstream 2431418 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2780197 79862081 ~ 79917875 (-)
G90190 NA other upstream 2783335 79886675 ~ 79888180 (-)

Expression

LOC110529788(LOC106577150) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110529788(LOC106577150) Expression in each Bioproject

Bar chart with 17 bars.
LOC110529788(LOC106577150) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network