LOC110529822 (LOC106577147)


Basic Information

Item Value
gene id LOC110529822
gene name LOC106577147
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77128910 ~ 77142504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612382.2
TTTGTTCGATGAGAAAATCAGCAGCCACTCAGTCCAGTTCCATCTCGCTCACTGCCGGCTACTGGGCTTCATCTCCTCGCCATATTTGGTGGGGAGTGGAAATACCATACGGATGCTTCAGATTTATACATCCGGTAAAACATCTTGCTCCATGTTCAGTCTTTGGTCACACCACACCGAATGTTCGTAGGCTGATGCACTACAAACACTGCAGCTCCCGTCTCCTCCACACTGTCGCACACAGCCATGGCGGACAGTGCAAGCGAGAGCGACACCGACGGAGCAGGGAGTAGCTCGGTTACCCTGATGTCATCCTCAGCCTCAAATTCTAGCAAGCCGGGAGTAGTCATTTCACAGTTTCGATTAGAGGAGTTAACGAACAGACTAGCTTCACTACAACAAGAGAACAAAGTTCTTAAAATTGAGCTAGAGACGTTCAAACTCAAGTGCAAGGCGCTACAGGAGGAGAATAGGGACCTGCGTAAAGCCAGCGTCACCATTCAAGCCAGGGCTGAGCAGGAGGAGGAGTTCATCAGCAACACCCTGTTCAAGAAGATCCAGGCCCTGCAGAAGGAGAAGGAGACCCTCGCTGTCAACtatgagaaagaggaggaatttCTCACAAATGAACTGTCAAGAAAACTCATGCAATTACAACATGAGAAGGCTGAGTTGGAACAGCACTTGGAGCAGGAGCAGGAGTTCCAGGTCAACAAACTGATGAAGAAGATAAAAAAAATGGAGAATGACACTATATCAAAGCAGCTCACCTTGGAGCAGCTAAGGCGTGAGAAGATTGACCTCGAAAACACATTAGAGCAAGAACAAGAGGCTCTTGTCAATAGACTGTGGAAGCGCATGGACAAATTGGAGGCAGAGAAAAGAATCCTCCAGGAGAAGTTGGACCAGCCTGTGtctgctcctccctcccccaGGGATGTTTCCATGGAGATTGACTCTCCGGAGAACATGATGCGGCATATCCGCTTCCTGAAGGACGAAGTGGAGAGGCTGAAGAAGAACCTCCGTACCACCGAGCTGCAACACACAGAGAAGCGGGCCCAGTACATTGAGGAGGAGCGGCACATGCGTGAGGAGAACATCCGTCTGCAGAGGAAgctgcagagagagatggagcgccGCGAAGCCCTGTGTAGACAGCTGTCTGAGAGCGAGTCCAGTCTGGAGATGGACGACGAGAGGTACTTCAATGAGATGTCAGCACAAGGCCTGCGAGCACGGACAGTGTCCAGTCCCATCCCATACACTCCTTCCCCCAGCTCCAGCCGACCTATATCACCTGGTCTGTCGTACGGCAGTCACACAGTTGGGTTCACTCCCCCGGCCaccctgtccagagctgccattGCTCACTTCAACGCCCCCGCCCTGCACGTCCATGGAAGTGCCTCCCACGCCGTAGCGAGGCCCTCCCCGAGAAGAAGCAACAGCCCCGACAAGTTCAAACGTCCGACACCACCGCCCTCACCTAATACACACTCAGGGGCGCAGCCTCTGCACCCACTCCCCCCGCCGGCCCAGCCGATGGTCCAGTCCATGTCCTCTCCGGCAGCTATGTCGCAGCATGCAGCGCATCCCCCCTCCCAGCCTTAAAATGTGTGCTATTTCATGCTACGCTACTTCGACAACCTGGGAGTTGAAACCCCACAGAGCAAGTTTCTATGAGCTGGCAGAAGACCTGAAGCAACACAGGACGTTCTATGAGGAATTGATTGACTTTAACAGCGCTTCTGGGATTTGTAGGCCCATATCTATTCACCTTGTCTTGTACATTTGTTTTTTGCTTAGAACTGTCCCCGATTGGAATTGTTATTGTGGCGCTGACAACCAACACGTATGGTAACAACGTCTGTAGTGGTGTTTGTGGGCAGGGTGTGTTGGATCCCTTCCATGTCTACAATACCGCAACATTTCAACTGCAttaatgtgccccccccccccttgtttaaAAGCAACTTGAGCAGTTGCATCCCAGTAAGAATCGCTTAAGTCAGATGTATTGTATCCCAGATGATCAGCGGGAGCTAgcgcaaatgttttttttgtttttttttcccctGAAAGAATTTTAATGCCACACTGCTCGTCAAAAAAAAGAACTACAACAAGGAAGATGGACACTGGTACATAAACCACAGATAAATGTTGCCTATTTGAGGTGTTAAAATGTAGTCTGAGGTGTTACAATGTATGTAGTCATGTACtcgtttctgtctctctcgctctcatgtAGTTCTAGAAGCTTCTATCATCTCTGTGGATATTCCTCGTCAGAAAACAACATAATGCTCTTTACACTAAGTATACTGCTATAACATTCTAAATGAATGGTACTGTTGAACTACATTTCTATGTATGATTAAAAGCTCTTGAAGATTTA

Function

NR:

description
coiled-coil domain-containing protein 6-like

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612382.2 True 2401 mRNA 0.49 9 77128910 77142504

Neighbor

gene id symbol gene type direction distance location
LOC110529797 LOC106577148 coding downstream 9998 77104366 ~ 77118912 (-)
LOC110529788 LOC106577150 coding downstream 25570 77084874 ~ 77103340 (-)
LOC110529759 LOC106577068 coding downstream 43930 77045476 ~ 77084980 (-)
LOC110529688 LOC106577065 coding downstream 198464 76872092 ~ 76930446 (-)
LOC110529704 LOC106577064 coding downstream 257041 76863479 ~ 76871869 (-)
LOC110529831 LOC106577144 coding upstream 5867 77148371 ~ 77313800 (-)
tmem26a LOC106577143 coding upstream 209503 77352007 ~ 77356781 (-)
rtkn2a rtkn2 coding upstream 311206 77453710 ~ 77460660 (-)
LOC110529928 LOC106577138 coding upstream 342115 77484619 ~ 77487187 (-)
LOC110529949 LOC106577136 coding upstream 383927 77526431 ~ 77535457 (-)
G86836 NA non-coding downstream 4347 77124046 ~ 77124563 (-)
G86834 NA non-coding downstream 6871 77121807 ~ 77122039 (-)
G86820 NA non-coding downstream 34741 77093856 ~ 77094169 (-)
G86816 NA non-coding downstream 38295 77090284 ~ 77090615 (-)
G86802 NA non-coding downstream 56461 77072246 ~ 77072449 (-)
G86848 NA non-coding upstream 2731 77145235 ~ 77145437 (-)
G86859 NA non-coding upstream 50424 77192928 ~ 77234133 (-)
G86927 NA non-coding upstream 189195 77331699 ~ 77332026 (-)
G87015 NA non-coding upstream 206220 77348724 ~ 77349001 (-)
G87016 NA non-coding upstream 208012 77350516 ~ 77351764 (-)
G86448 NA other downstream 261312 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 520556 76606682 ~ 76608354 (-)
G86063 NA other downstream 605429 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 728954 76324531 ~ 76399997 (-)
G85866 NA other downstream 794774 76333468 ~ 76334136 (-)
G87090 NA other upstream 336099 77478603 ~ 77479939 (-)
G89418 NA other upstream 1907307 79049811 ~ 79050491 (-)
G90081 NA other upstream 2392254 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2741033 79862081 ~ 79917875 (-)
G90190 NA other upstream 2744171 79886675 ~ 79888180 (-)

Expression


Co-expression Network