LOC100136692 (cdc2)


Basic Information

Item Value
gene id LOC100136692
gene name cdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77339654 ~ 77345543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606416.2
AAAGACAGCGAGCGACGTGATTGCTTGGTTTTGAAAGCTTGAAGCGCCGCGGCCAATTCGAAAAGAATGCACCCACTCAGTACTGTAACGTAGCTGACTGCAAGAGAGCCACACTCATTTTCCACCCAGCTAGTTAATTTAGCTACAGTCAAGCTACACAACGATATTGGAAGGTAGCTATATATGGAACAATGGACGATTACGTGAAAATAGAGAAAATCGGAGAGGGTACCTATGGGGTTGTGTATAAAGGCAGACACAAGACGACAGGCCAGGTGGTGGCAATGAAGAAGATCCGTCtggagagcgaggaggagggagTGCCAAGCACGGCTGTTAGAGAGATCTCTCTTCTCAAAGAGCTAGCGCACCCTAATGTTGTACAGCTTCTAGATGTGCTGATGCAGGAGTCCAGACTGTACCTCATCTTTGAGTTCCTGTCCATGGACCTGAAGAAATACCTAGACTCTATCCCCTCGGGCCAGTACATGGACCCCATGCTTGTGAAGAGCTATCTGTACCAGATCTTGGAAGGCATCCTGTTCTGCCACTGTAGAAGGGTCCTCCACAGAGACCTGAAACCTCAGAACCTGCTGATTGACAACAAGGGAGTGATCAAGCTGGCAGACTTTGGGTTGGCCAGGGCTTTCGGGGTGCCAGTCCGGGTATATACCCACGAGGTTGTGACACTGTGGTACAGGGCTCCTGAGGTGCTGCTGGGGGCCCCACGGTACTCCACCCCTGTGGATGTCTGGAGTATCGGGACCATCTTTGCAGAGTtggctacaaagaaaccactttTCCACGGAGACTCAGAGATAGACCAGCTTTTCAGGATCTTCAGGACCCTTGGTACTCCCAACAATGACATCTGGCCAGAGGTTGAGTCTCTGCCTGACTACAAGAACACGTTCCCCAAGTGGAAGTCTGGGAACCTGTCTTCCATGGTGAAGAACCTGGACAAGAAAGGCATTGATCTGCTCGCTAAAACACTAATCTATGACCCACCCAAGAGGATCTCTGCCAGACAGGCAATGAGCCATCCATACTTTGACGACCTGGACAAAACCACTCTACCTGCCAGCACGGTCAAGATGTAAACGCCACACAGCTCAACTCAAAGGACCTGAAAAATAGTACAATTATGGAAGCATATTGATCGTCTGGTTTTGTTTGtatgttttttctttgtttgtCCTTTTTCTGTCTACCGGTAATATTAATCATTATTCTGTAAATAGCGTTTAAAAAAACCAAAACCGGTTTGGATCTAAAGTGACATGTACTAAAGGTTACATTCAAAAGTAGTATTTTTTCAATAAAGTGCACTTTTCTAGATCTGTTACTTTTAA
>XM_021607235.2
AAAGACAGCGAGCGACGTGATTGCTTGGTTTTGAAAGCTTGAAGCGCCGCGGCCAATTCGAAAAGAATGCACCCACTCAGTACTGTAACGTAGCTGACTGCAAGAGAGCCACACTCATTTTCCACCCAGCTAGTTAATTTAGCTACAGTCAAGCTACACAACGATATTGGAAGCAAACCTAGCCTGTTTTTTTCCCAGGGAACAATGGACGATTACGTGAAAATAGAGAAAATCGGAGAGGGTACCTATGGGGTTGTGTATAAAGGCAGACACAAGACGACAGGCCAGGTGGTGGCAATGAAGAAGATCCGTCtggagagcgaggaggagggagTGCCAAGCACGGCTGTTAGAGAGATCTCTCTTCTCAAAGAGCTAGCGCACCCTAATGTTGTACAGCTTCTAGATGTGCTGATGCAGGAGTCCAGACTGTACCTCATCTTTGAGTTCCTGTCCATGGACCTGAAGAAATACCTAGACTCTATCCCCTCGGGCCAGTACATGGACCCCATGCTTGTGAAGAGCTATCTGTACCAGATCTTGGAAGGCATCCTGTTCTGCCACTGTAGAAGGGTCCTCCACAGAGACCTGAAACCTCAGAACCTGCTGATTGACAACAAGGGAGTGATCAAGCTGGCAGACTTTGGGTTGGCCAGGGCTTTCGGGGTGCCAGTCCGGGTATATACCCACGAGGTTGTGACACTGTGGTACAGGGCTCCTGAGGTGCTGCTGGGGGCCCCACGGTACTCCACCCCTGTGGATGTCTGGAGTATCGGGACCATCTTTGCAGAGTtggctacaaagaaaccactttTCCACGGAGACTCAGAGATAGACCAGCTTTTCAGGATCTTCAGGACCCTTGGTACTCCCAACAATGACATCTGGCCAGAGGTTGAGTCTCTGCCTGACTACAAGAACACGTTCCCCAAGTGGAAGTCTGGGAACCTGTCTTCCATGGTGAAGAACCTGGACAAGAAAGGCATTGATCTGCTCGCTAAAACACTAATCTATGACCCACCCAAGAGGATCTCTGCCAGACAGGCAATGAGCCATCCATACTTTGACGACCTGGACAAAACCACTCTACCTGCCAGCACGGTCAAGATGTAAACGCCACACAGCTCAACTCAAAGGACCTGAAAAATAGTACAATTATGGAAGCATATTGATCGTCTGGTTTTGTTTGtatgttttttctttgtttgtCCTTTTTCTGTCTACCGGTAATATTAATCATTATTCTGTAAATAGCGTTTAAAAAAACCAAAACCGGTTTGGATCTAAAGTGACATGTACTAAAGGTTACATTCAAAAGTAGTATTTTTTCAATAAAGTGCACTTTTCTAGATCTGTTACTTTTAA
>NM_001124660.1
AGCGAGCGACGTGATTGCTTGGTTTTGAAAGCTTGAAGCGCCGCGGCCAATTCGAAAAGAATGCACCCACTCAGTACTGTAACGTAGCTGACTGCAAGAGAGCCACACTCATTTTCCACCCAGCTAGTTAATTTAGCTACAGTCAAGCTACACAACGATATTGGAAGGGAACAATGGACGATTACGTGAAAATAGAGAAAATCGGAGAGGGTACCTATGGGGTTGTGTATAAAGGCAGACACAAGACGACAGGCCAGGTGGTGGCAATGAAGAAGATCCGTCtggagagcgaggaggagggagTGCCAAGCACGGCTGTTAGAGAGATCTCTCTTCTCAAAGAGCTAGCGCACCCTAATGTTGTACAGCTTCTAGATGTGCTGATGCAGGAGTCCAGACTGTACCTCATCTTTGAGTTCCTGTCCATGGACCTGAAGAAATACCTAGACTCTATCCCCTCGGGCCAGTACATGGACCCCATGCTTGTGAAGAGCTATCTGTACCAGATCTTGGAAGGCATCCTGTTCTGCCACTGTAGAAGGGTCCTCCACAGAGACCTGAAACCTCAGAACCTGCTGATTGACAACAAGGGAGTGATCAAGCTGGCAGACTTTGGGTTGGCCAGGGCTTTCGGGGTGCCAGTCCGGGTATATACCCACGAGGTTGTGACACTGTGGTACAGGGCTCCTGAGGTGCTGCTGGGGGCCCCACGGTACTCCACCCCTGTGGATGTCTGGAGTATCGGGACCATCTTTGCAGAGTtggctacaaagaaaccactttTCCACGGAGACTCAGAGATAGACCAGCTTTTCAGGATCTTCAGGACCCTTGGTACTCCCAACAATGACATCTGGCCAGAGGTTGAGTCTCTGCCTGACTACAAGAACACGTTCCCCAAGTGGAAGTCTGGGAACCTGTCTTCCATGGTGAAGAACCTGGACAAGAAAGGCATTGATCTGCTCGCTAAAACACTAATCTATGACCCACCCAAGAGGATCTCTGCCAGACAGGCAATGAGCCATCCATACTTTGACGACCTGGACAAAACCACTCTACCTGCCAGCACGGTCAAGATGTAAACGCCACACAGCTCAACTCAAAGGACCTGAAAAATAGTACAATTATGGAAGCATATTGATCGTCTGGTTTTGTTTGtatgttttttctttgtttgtCCTTTTTCTGTCTACCGGTAATATTAATCATTATTCTGTAAATAGCGTTTAAAAAAACCAAAACCGGTTTGGATCTAAAGTGACATGTACTAAAGGTTACATTCAAAAGTAGTATTTTTTCAATAAAGTGCACTTTTCTAGATCTGTT

Function

symbol description
cdc2 cyclin-dependent kinase; cyclin-dependent kinase 1

NR:

description
cyclin-dependent kinase 1-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02087 CDK1, CDC2; cyclin-dependent kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606416.2 False 1352 mRNA 0.47 8 77339654 77345543
XM_021607235.2 False 1365 mRNA 0.47 8 77339654 77345543
NM_001124660.1 True 1326 mRNA 0.47 8 77339660 77345535

Neighbor

gene id symbol gene type direction distance location
LOC118965545 NA coding upstream 51960 77286989 ~ 77287694 (+)
LOC110529780 LOC106577069 coding upstream 291302 77027460 ~ 77048352 (+)
LOC110529720 NA coding upstream 324282 76943550 ~ 77015372 (+)
LOC110529711 LOC106607701 coding upstream 400790 76935475 ~ 76938864 (+)
LOC110532693 LOC106577081 coding upstream 475432 76812280 ~ 76864222 (+)
LOC110529906 LOC106577140 coding downstream 36315 77381858 ~ 77451342 (+)
LOC110529921 LOC106577139 coding downstream 115337 77460880 ~ 77468921 (+)
LOC110529936 aedo coding downstream 136941 77482484 ~ 77484050 (+)
LOC110529943 LOC106577137 coding downstream 148502 77494045 ~ 77502290 (+)
LOC110532710 NA coding downstream 164015 77509558 ~ 77512353 (+)
G86559 NA non-coding upstream 185928 77150988 ~ 77153726 (+)
G86619 NA non-coding upstream 195689 77143733 ~ 77143965 (+)
G86593 NA non-coding upstream 240420 77098858 ~ 77099234 (+)
G86588 NA non-coding upstream 249416 77090020 ~ 77090238 (+)
G86579 NA non-coding upstream 268316 77071124 ~ 77071338 (+)
G86937 LOC106577143 non-coding downstream 8941 77354484 ~ 77354871 (+)
G86938 NA non-coding downstream 10924 77356467 ~ 77356784 (+)
G86939 NA non-coding downstream 11707 77357250 ~ 77357637 (+)
G86949 NA non-coding downstream 25938 77371481 ~ 77371685 (+)
G86950 NA non-coding downstream 31028 77376571 ~ 77436269 (+)
G86614 NA other upstream 215227 77123935 ~ 77124427 (+)
G86019 NA other upstream 703718 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 879831 76457821 ~ 76459823 (+)
G83979 NA other upstream 2194142 75144864 ~ 75145512 (+)
G83829 NA other upstream 2225464 75112660 ~ 75114190 (+)
G87159 NA other downstream 224472 77570015 ~ 77570470 (+)
G89667 NA other downstream 2203474 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 2406230 79720751 ~ 79765359 (+)
G91064 NA other downstream 3419571 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 4192788 81538331 ~ 81541400 (+)

Expression


Co-expression Network